View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5104_high_5 (Length: 445)
Name: NF5104_high_5
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5104_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Complemental strand, 21097424 - 21097013
Alignment:
| Q |
12 |
catcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21097424 |
catcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggag |
21097325 |
T |
|
| Q |
112 |
agtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatcatttttgagatgcaactctaatggt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21097324 |
agtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatcatttttgagatgcaattctaatggt |
21097225 |
T |
|
| Q |
212 |
ttcaatgatgcagtgtttgaagaccaaacattgtttaatgaaacatcaagcaatgcaatgtttcctgtgtttaaaagggaaagtttggttcgttttccgt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21097224 |
ttcaatgatgcagtgtttgaagaccaaacattgtttaatgaaacatcaagcaatacaatgtttcctgtgtttaaaagggaaagtttggttcgttttccgt |
21097125 |
T |
|
| Q |
312 |
taaccggttggtcgcgattcgccatccaaatgatggtcttgttgaggtcaagggaagttggttctgtgaaccatatggcaaaggaatatgagttttcacc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21097124 |
taaccggttggtcgcgattcgccatccaaatgatggtcttgttgaggtcaagggaagttggttctgtgaaccatatggcaaaggaatatgaattttcacc |
21097025 |
T |
|
| Q |
412 |
aatggaagtaaa |
423 |
Q |
| |
|
|||||||||||| |
|
|
| T |
21097024 |
aatggaagtaaa |
21097013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 423
Target Start/End: Complemental strand, 21107043 - 21106632
Alignment:
| Q |
12 |
catcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggag |
111 |
Q |
| |
|
||||||||||| ||||| | |||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21107043 |
catcatcaaagtagaacttgtagaagccagtagaatgattactctcacttcttgaagctacaagctttgtatatcttgtaagaggttgacctggaaggag |
21106944 |
T |
|
| Q |
112 |
agtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatcatttttgagatgcaactctaatggt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
21106943 |
agtatctgttggagagtcaaaactctgccacaaaattgtgattccttgaagctcacgcaacacaagatttccatcatctttgagatgcaactctagtggt |
21106844 |
T |
|
| Q |
212 |
ttcaatgatgcagtgtttgaagaccaaacattgtttaatgaaacatcaagcaatgcaatgtttcctgtgtttaaaagggaaagtttggttcgttttccgt |
311 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||| |||||||||| |||| |||| ||||| ||||||||||||| |||||||| ||||||||| | |
|
|
| T |
21106843 |
ttcaatgatgctgtgtttgaagacctaacattgtttaaagaaacatcaaacaatacaatatttccagtgtttaaaagggtaagtttggatcgttttccat |
21106744 |
T |
|
| Q |
312 |
taaccggttggtcgcgattcgccatccaaatgatggtcttgttgaggtcaagggaagttggttctgtgaaccatatggcaaaggaatatgagttttcacc |
411 |
Q |
| |
|
| || |||||||||||||| ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
21106743 |
tcacgggttggtcgcgatttgccatccaaataatggttttgttgaggttgagggaagttggttctgtgaaccatatggcaaaggaatatgcattctcacc |
21106644 |
T |
|
| Q |
412 |
aatggaagtaaa |
423 |
Q |
| |
|
||| | |||||| |
|
|
| T |
21106643 |
aatagcagtaaa |
21106632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 21131789 - 21131983
Alignment:
| Q |
13 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga |
112 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||| ||| ||||||| ||||| ||||| ||||| || || |||||| ||||||||| |
|
|
| T |
21131789 |
atcatcaaagaaacacttatagaagccagaagaatgattactctggcttcttgaagaaacaagttttgtgtatctagtgagtggttgattaggaaggaga |
21131888 |
T |
|
| Q |
113 |
gtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatcatttttgagatgcaactctaa |
207 |
Q |
| |
|
|||| ||||| | ||| | || |||||||||||| | |||||||||||||||| ||||||||||| ||||| | |||||||| ||||||||| |
|
|
| T |
21131889 |
gtattggttgggaaatcatagctttgccacaaaatggtacttccttgaagctcacgtaacacaagattaccatcttctttgagatacaactctaa |
21131983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 18659951 - 18660147
Alignment:
| Q |
13 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga |
112 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||| | ||| ||||||| ||||| ||| | ||||| || ||||||||| ||||||||| |
|
|
| T |
18659951 |
atcatcaaagaaaaacttatagaagccagaagaatgattactttggctttttgaagaaacaagttttatgtatctagtgagaggttgattaggaaggaga |
18660050 |
T |
|
| Q |
113 |
gtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatcatttttgagatgcaactctaatg |
209 |
Q |
| |
|
|||| |||||| | ||| | || |||||||| ||| | |||||||||||||||| || |||||||| ||||| | |||||||| ||||||||||| |
|
|
| T |
18660051 |
gtatttgttgggaaatcatagctttgccacaagatggtagttccttgaagctcacgtaatacaagattaccatcttctttgagatacaactctaatg |
18660147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 21112829 - 21113026
Alignment:
| Q |
13 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga |
112 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||||||| | ||| ||||||| ||||| ||||||||||| || ||||||||| ||||||||| |
|
|
| T |
21112829 |
atcatcaaagaacaacttataaaagccagaagaatgattactatggcttcttgaagaaacaaggtttgtatatctagtgagaggttgattaggaaggaga |
21112928 |
T |
|
| Q |
113 |
gtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatcatttttgagatgcaactctaatgg |
210 |
Q |
| |
|
|||| ||| || | ||| | || |||||||| ||| | ||||||||||||||| ||||||||||| ||||| | | | |||| |||||||||||| |
|
|
| T |
21112929 |
gtatttgtcgggaaatcatagctttgccacaagatggtaggtccttgaagctcacgtaacacaagattcccatcttctctaagatacaactctaatgg |
21113026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 21124223 - 21124423
Alignment:
| Q |
13 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatat---cttgtaagaggttgacctggaagg |
109 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||| ||| ||||||| | ||| ||||| ||| || || ||||||||| |||||| |
|
|
| T |
21124223 |
atcatcaaagaaacacttatagaagccagaagaatgattactctggcttcttgaagaaataagttttgtgtattatctagtgagaggttgattaggaagg |
21124322 |
T |
|
| Q |
110 |
agagtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatcatttttgagatgcaactctaatg |
209 |
Q |
| |
|
|||| || |||||| | ||| | || | || ||||||| | ||| |||||||||||| ||||||||||| ||||| | |||||||| ||||||||||| |
|
|
| T |
21124323 |
agagaatttgttgggaaatcatagctttcccccaaaatggtagttctttgaagctcacgtaacacaagattaccatcttctttgagatacaactctaatg |
21124422 |
T |
|
| Q |
210 |
g |
210 |
Q |
| |
|
| |
|
|
| T |
21124423 |
g |
21124423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 39130947 - 39130721
Alignment:
| Q |
13 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga |
112 |
Q |
| |
|
||||||||| || ||| ||||||||||||||||||||||||||| |||| |||| || |||| ||||| ||||| || ||||||||| ||||||||| |
|
|
| T |
39130947 |
atcatcaaaaaacaacttatagaagccagaagaatgattactctgacttcttgaggaaccaagttttgtgtatctagtgagaggttgattaggaaggaga |
39130848 |
T |
|
| Q |
113 |
gtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatcatttttgagatgcaactctaatggtt |
212 |
Q |
| |
|
|||| ||||||| | ||| | || |||||||| || | | |||||||||||||| ||||||||||| ||||| | ||| |||| |||||||| ||| |
|
|
| T |
39130847 |
gtatttgttggaaaatcatagctttgccacaagatcgtagtaccttgaagctcacgtaacacaagattgccatcttcttttagatacaactctagtggag |
39130748 |
T |
|
| Q |
213 |
tcaatgatgcagtgtttgaagaccaaa |
239 |
Q |
| |
|
| |||| | |||||||||||||||| |
|
|
| T |
39130747 |
tgtttgattctgtgtttgaagaccaaa |
39130721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 26745558 - 26745598
Alignment:
| Q |
104 |
ggaaggagagtatctgttggagagtcaaaactctgccacaa |
144 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
26745558 |
ggaaggagagtatctgttggggaatcaaaactctgccacaa |
26745598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 26738526 - 26738570
Alignment:
| Q |
104 |
ggaaggagagtatctgttggagagtcaaaactctgccacaaaatg |
148 |
Q |
| |
|
|||||||| |||||||||||| | |||||||| |||||||||||| |
|
|
| T |
26738526 |
ggaaggagggtatctgttggaaaatcaaaactttgccacaaaatg |
26738570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University