View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5104_high_8 (Length: 426)
Name: NF5104_high_8
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5104_high_8 |
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| [»] scaffold0040 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 417
Target Start/End: Original strand, 18015414 - 18015827
Alignment:
| Q |
6 |
attttcatctgtatgtatcgatctagggtgccttttaggctggactca--gatgtatggaccaagatttctgaccattaacttgaataaatttatagatt |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||| |||||| |||||||||||| |
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| T |
18015414 |
attttcatctgtatgtatcgatctagggtgccttttagcatgaactcatagatgtatggaccaaaatttctgaccattagcttgaacaaatttatagatc |
18015513 |
T |
|
| Q |
104 |
ctatcttgtatttgctgtattatatctctccacccatcannnnnnnattctttctctttattctcttcctatctccaatagagaagtgtcgaaaaccgtt |
203 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18015514 |
ctattttgtatttgctgtattatatctctccacccatcatttttttattctttctctttattctcttcctctctccaatagagaagtgtcgaaaaccgtt |
18015613 |
T |
|
| Q |
204 |
tcctcctcctagctctctctctttaacttaactgcataaacgcataaatatgagttcactaaatttacagatttgagctcatgtgttcctaattaataat |
303 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18015614 |
tcctcctcctaactctctctccttaacttaactgcataaacgcataaacatgagttcactaaatttgcagatttgagctcatgtgttcctaattaataat |
18015713 |
T |
|
| Q |
304 |
tgatgtgttctttaagtttatatcatcatcagattaaaatatatgcttcatattctttctaattaattttatccaaatttatctttcttgcgttcttccc |
403 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18015714 |
tgatgtgttctttaagtttatatcatcatctgattaaaataaatgtttcatattctttctaattaattttatccaaatttatctttcttgcgttcttccc |
18015813 |
T |
|
| Q |
404 |
aatttcattcatct |
417 |
Q |
| |
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|||| ||||||||| |
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| T |
18015814 |
aattacattcatct |
18015827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 60 - 417
Target Start/End: Original strand, 43038753 - 43039110
Alignment:
| Q |
60 |
tggaccaagatttctgaccattaacttgaataaatttatagattctatcttgtatttgctgtattatatctctccacccatcannnnnnnattctttctc |
159 |
Q |
| |
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|||| |||||||||||||||||| |||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43038753 |
tggatcaagatttctgaccattagcttgaacaaacttatagatcatatcttgtatttgctgtattatatctctccacccatcatttttttattctttctc |
43038852 |
T |
|
| Q |
160 |
tttattctcttcctatctccaatagagaagtgtcgaaaaccgtttcctcctcctagctctctctctttaacttaactgcataaacgcataaatatgagtt |
259 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| |
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| T |
43038853 |
tttattctcttcctctctccaatagagaagtgtcgaaaaccgtttcctcctcctagctctctctccttaacttaactgcataaacgtataaacatgagtt |
43038952 |
T |
|
| Q |
260 |
cactaaatttacagatttgagctcatgtgttcctaattaataattgatgtgttctttaagtttatatcatcatcagattaaaatatatgcttcatattct |
359 |
Q |
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|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43038953 |
cactaaatttgcagatttgagctcatgtgttcctaattaataattgatgtgttctttaagtttatatcatcatcagattaaaataaatgcttcatattct |
43039052 |
T |
|
| Q |
360 |
ttctaattaattttatccaaatttatctttcttgcgttcttcccaatttcattcatct |
417 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
43039053 |
ttctaattaattttatccaaatttatctttcgtgcgttcttcccaatttcattcatct |
43039110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 60 - 276
Target Start/End: Original strand, 51194688 - 51194904
Alignment:
| Q |
60 |
tggaccaagatttctgaccattaacttgaataaatttatagattctatcttgtatttgctgtattatatctctccacccatcannnnnnnattctttctc |
159 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
51194688 |
tggaccaagatttcttaccattagcttgaacaaatttatagatcctatcttgtatttgctatattatatctctccacccatcatttttttattctttctc |
51194787 |
T |
|
| Q |
160 |
tttattctcttcctatctccaatagagaagtgtcgaaaaccgtttcctcctcctagctctctctctttaacttaactgcataaacgcataaatatgagtt |
259 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
51194788 |
tttattctcttcctctctccaatagagaagtgtcgaaaaccttttcctcttcctagctctctctccttaacttaactgcataaacgcataaacatgagtt |
51194887 |
T |
|
| Q |
260 |
cactaaatttacagatt |
276 |
Q |
| |
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|||||||||| |||||| |
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| T |
51194888 |
cactaaatttgcagatt |
51194904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 333 - 417
Target Start/End: Original strand, 51194899 - 51194983
Alignment:
| Q |
333 |
cagattaaaatatatgcttcatattctttctaattaattttatccaaatttatctttcttgcgttcttcccaatttcattcatct |
417 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| |
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| T |
51194899 |
cagattaaaataaatgcttcatattctttctaattaattttatccaaattgatctttcgtgcgttcttctcaatttcattcatct |
51194983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 60 - 417
Target Start/End: Complemental strand, 52694773 - 52694416
Alignment:
| Q |
60 |
tggaccaagatttctgaccattaacttgaataaatttatagattctatcttgtatttgctgtattatatctctccacccatcannnnnnnattctttctc |
159 |
Q |
| |
|
|||| |||||||||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52694773 |
tggatcaagatttctgaccattagcttgaacaaacttatagatcctatcttgtatttgctgtattatatctctccacccatcatttttttattctttctc |
52694674 |
T |
|
| Q |
160 |
tttattctcttcctatctccaatagagaagtgtcgaaaaccgtttcctcctcctagctctctctctttaacttaactgcataaacgcataaatatgagtt |
259 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||| |
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|
| T |
52694673 |
tttattctcttcctctctccaatagagaagtgtcgaaaaccgtttcctcctcctagctctctctccttaacttaattgcataaacgtataaacatgagtt |
52694574 |
T |
|
| Q |
260 |
cactaaatttacagatttgagctcatgtgttcctaattaataattgatgtgttctttaagtttatatcatcatcagattaaaatatatgcttcatattct |
359 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
52694573 |
cactaaatttgcagattttagctcatgtgttcctaattaataattgatgtgttctttaagtttatatcatcatcagattaaaataaatgcttcatattct |
52694474 |
T |
|
| Q |
360 |
ttctaattaattttatccaaatttatctttcttgcgttcttcccaatttcattcatct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
52694473 |
ttctaattaattttatccaaatttatcttttgtgcgttcttcccaatttcattcatct |
52694416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 60 - 301
Target Start/End: Original strand, 22629242 - 22629482
Alignment:
| Q |
60 |
tggaccaagatttctgaccattaacttgaataaatttatagattctatcttgtatttgctgtattatatctctccacccatcannnnnnnattctttctc |
159 |
Q |
| |
|
|||| |||||||| |||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| |
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|
| T |
22629242 |
tggatcaagatttttgaccattaacttgaacaaacttatagatcctatcttgtatttgttgtattatatctctccacccatcatttttttattctttctc |
22629341 |
T |
|
| Q |
160 |
tttattctcttcctatctccaatagagaagtgtcgaaaaccgtttcctcctcctagctctctctctttaacttaactgcataaacgcataaatatgagtt |
259 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || || |||||||||||||||||||| ||||||| |
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|
| T |
22629342 |
tttattctcttcctctctccaatagagaagtgtcgaaaactgtttcctcctcctagctctctctcctt-acctaactgcataaacgcataaacatgagtt |
22629440 |
T |
|
| Q |
260 |
cactaaatttacagatttgagctcatgtgttcctaattaata |
301 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
22629441 |
aactaaacttgcagatttgagctcatgtgttcctaattaata |
22629482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 291 - 417
Target Start/End: Original strand, 22630552 - 22630678
Alignment:
| Q |
291 |
cctaattaataattgatgtgttctttaagtttatatcatcatcagattaaaatatatgcttcatattctttctaattaattttatccaaatttatctttc |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22630552 |
cctaattaataattgatgtgttctttaagtttatatcatcatcagattaaaataaatgcttcatattctttctaattaattttatccaaatttatctttc |
22630651 |
T |
|
| Q |
391 |
ttgcgttcttcccaatttcattcatct |
417 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
22630652 |
gtgcgtttttcccaatttcattcatct |
22630678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 1013952 - 1013903
Alignment:
| Q |
339 |
aaaatatatgcttcatattctttctaattaattttatccaaatttatctt |
388 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
1013952 |
aaaatatatacttcatattcttcctaattaattttatccaaatttatctt |
1013903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 69079 - 69024
Alignment:
| Q |
349 |
cttcatattctttctaattaattttatccaaatttatctttcttgcgttcttcccaa |
405 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||| |
|
|
| T |
69079 |
cttcatattcttcctaattaattttatccaaatttatc-ttcatgtgttcttcccaa |
69024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 405
Target Start/End: Original strand, 7252371 - 7252432
Alignment:
| Q |
343 |
tatatgcttcatattctttctaattaattttatccaaatttatctttcttgcgttcttcccaa |
405 |
Q |
| |
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||||| |||||||||||| ||||||| ||||||||||||||||| ||| || ||||||||||| |
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|
| T |
7252371 |
tatatacttcatattcttcctaattacttttatccaaatttatc-ttcatgtgttcttcccaa |
7252432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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