View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5104_high_9 (Length: 365)

Name: NF5104_high_9
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5104_high_9
NF5104_high_9
[»] chr1 (25 HSPs)
chr1 (13-296)||(23664391-23664674)
chr1 (202-296)||(25094886-25094980)
chr1 (111-171)||(5049096-5049156)
chr1 (109-171)||(42721893-42721954)
chr1 (110-171)||(22070144-22070205)
chr1 (111-171)||(21906021-21906081)
chr1 (321-365)||(23664315-23664359)
chr1 (111-171)||(26221341-26221400)
chr1 (111-171)||(36296358-36296417)
chr1 (111-171)||(28946201-28946260)
chr1 (111-234)||(48999050-48999175)
chr1 (110-158)||(1347121-1347168)
chr1 (321-361)||(25095012-25095052)
chr1 (111-171)||(27431192-27431252)
chr1 (192-246)||(27431114-27431168)
chr1 (190-252)||(44310182-44310244)
chr1 (194-252)||(48596663-48596721)
chr1 (114-171)||(34307849-34307905)
chr1 (324-365)||(48596558-48596599)
chr1 (111-171)||(48596746-48596806)
chr1 (120-171)||(9022867-9022918)
chr1 (194-252)||(9022943-9023000)
chr1 (112-158)||(9956586-9956631)
chr1 (111-156)||(32179194-32179238)
chr1 (194-246)||(5049182-5049233)
[»] chr5 (19 HSPs)
chr5 (109-252)||(5578923-5579068)
chr5 (111-252)||(42879239-42879381)
chr5 (111-252)||(9409870-9410013)
chr5 (111-252)||(13490034-13490175)
chr5 (111-246)||(2676608-2676745)
chr5 (111-252)||(39537705-39537845)
chr5 (110-174)||(7849976-7850039)
chr5 (114-171)||(18888714-18888771)
chr5 (111-171)||(38490702-38490761)
chr5 (111-174)||(14652120-14652182)
chr5 (111-171)||(13383003-13383062)
chr5 (111-158)||(6950353-6950399)
chr5 (111-158)||(41869418-41869464)
chr5 (194-252)||(23962580-23962637)
chr5 (326-365)||(16040399-16040438)
chr5 (324-365)||(9409765-9409806)
chr5 (324-365)||(39537602-39537642)
chr5 (194-234)||(13382937-13382977)
chr5 (111-171)||(43324108-43324167)
[»] chr7 (30 HSPs)
chr7 (114-252)||(20395105-20395243)
chr7 (109-252)||(8389617-8389762)
chr7 (108-171)||(18667009-18667072)
chr7 (111-171)||(13753759-13753819)
chr7 (110-252)||(35478295-35478437)
chr7 (111-171)||(43823964-43824024)
chr7 (111-171)||(4539512-4539572)
chr7 (111-171)||(8069234-8069293)
chr7 (111-171)||(48238116-48238175)
chr7 (111-171)||(48636360-48636419)
chr7 (105-171)||(31072929-31072994)
chr7 (111-158)||(15680122-15680168)
chr7 (126-171)||(6189785-6189830)
chr7 (324-365)||(18667218-18667259)
chr7 (110-171)||(19312329-19312389)
chr7 (195-252)||(43824055-43824112)
chr7 (111-160)||(44733170-44733219)
chr7 (333-365)||(20394998-20395030)
chr7 (111-171)||(37549175-37549234)
chr7 (194-250)||(43179744-43179800)
chr7 (111-158)||(12379303-12379349)
chr7 (194-252)||(13753843-13753901)
chr7 (194-252)||(18667096-18667154)
chr7 (110-171)||(135356-135416)
chr7 (324-365)||(35478190-35478231)
chr7 (199-252)||(44733259-44733311)
chr7 (111-156)||(45446446-45446491)
chr7 (110-174)||(10016127-10016190)
chr7 (333-365)||(13753974-13754006)
chr7 (194-222)||(31072874-31072902)
[»] chr8 (18 HSPs)
chr8 (111-252)||(7973299-7973442)
chr8 (111-250)||(16729378-16729516)
chr8 (110-171)||(3762338-3762399)
chr8 (111-171)||(1981234-1981294)
chr8 (111-171)||(7264031-7264091)
chr8 (111-171)||(45117137-45117197)
chr8 (112-252)||(39905874-39906014)
chr8 (110-171)||(40971088-40971149)
chr8 (111-171)||(6927924-6927983)
chr8 (111-252)||(4432389-4432531)
chr8 (111-171)||(11995100-11995159)
chr8 (321-365)||(16729578-16729622)
chr8 (111-171)||(31597165-31597224)
chr8 (324-365)||(7263845-7263886)
chr8 (111-171)||(3509847-3509906)
chr8 (194-248)||(18327042-18327096)
chr8 (133-171)||(28508937-28508975)
chr8 (194-252)||(40971173-40971231)
[»] chr6 (20 HSPs)
chr6 (111-225)||(1131416-1131531)
chr6 (111-252)||(20990100-20990240)
chr6 (111-246)||(1603013-1603150)
chr6 (112-252)||(18674997-18675139)
chr6 (111-171)||(22012515-22012575)
chr6 (109-169)||(34040410-34040470)
chr6 (111-252)||(34043181-34043324)
chr6 (111-252)||(21442393-21442537)
chr6 (111-171)||(14677386-14677445)
chr6 (111-171)||(15059811-15059871)
chr6 (111-171)||(33516981-33517040)
chr6 (321-365)||(1131620-1131664)
chr6 (110-158)||(31475173-31475220)
chr6 (185-252)||(1422674-1422741)
chr6 (111-157)||(9534331-9534376)
chr6 (194-252)||(26817090-26817147)
chr6 (324-365)||(1422805-1422846)
chr6 (324-365)||(21442601-21442642)
chr6 (195-252)||(26213181-26213238)
chr6 (194-250)||(1213000-1213056)
[»] chr2 (27 HSPs)
chr2 (110-252)||(2553701-2553843)
chr2 (110-252)||(41826281-41826423)
chr2 (111-234)||(19685439-19685564)
chr2 (111-245)||(33015518-33015654)
chr2 (111-171)||(44314442-44314502)
chr2 (111-171)||(44322621-44322681)
chr2 (110-171)||(22576382-22576443)
chr2 (110-171)||(45277868-45277928)
chr2 (111-171)||(90716-90775)
chr2 (111-171)||(18781564-18781623)
chr2 (110-171)||(7880715-7880775)
chr2 (111-171)||(2565275-2565334)
chr2 (194-250)||(11199603-11199658)
chr2 (122-174)||(40709899-40709951)
chr2 (110-171)||(19674456-19674516)
chr2 (111-158)||(18582958-18583004)
chr2 (115-252)||(6221032-6221171)
chr2 (195-252)||(27862122-27862179)
chr2 (324-365)||(33015406-33015447)
chr2 (184-252)||(7443879-7443947)
chr2 (115-171)||(14903684-14903740)
chr2 (194-250)||(22576302-22576358)
chr2 (111-158)||(38696798-38696844)
chr2 (324-365)||(2553906-2553947)
chr2 (113-158)||(10022563-10022607)
chr2 (324-365)||(41826177-41826218)
chr2 (110-170)||(33054398-33054457)
[»] scaffold0016 (5 HSPs)
scaffold0016 (110-252)||(89377-89518)
scaffold0016 (110-252)||(87950-88092)
scaffold0016 (110-252)||(88426-88568)
scaffold0016 (110-252)||(88902-89044)
scaffold0016 (110-252)||(87477-87618)
[»] chr4 (19 HSPs)
chr4 (111-252)||(39480571-39480714)
chr4 (111-171)||(10095425-10095485)
chr4 (110-171)||(28143837-28143897)
chr4 (111-171)||(51337307-51337366)
chr4 (111-251)||(6261938-6262079)
chr4 (111-171)||(7414128-7414188)
chr4 (111-171)||(7460209-7460269)
chr4 (111-171)||(14192705-14192764)
chr4 (194-252)||(3665779-3665837)
chr4 (109-171)||(49242561-49242622)
chr4 (111-158)||(14033729-14033775)
chr4 (111-158)||(36213396-36213443)
chr4 (111-171)||(29283372-29283431)
chr4 (184-252)||(36213454-36213521)
chr4 (111-155)||(38052595-38052638)
chr4 (113-171)||(17647962-17648019)
chr4 (192-252)||(10095342-10095402)
chr4 (194-234)||(41509528-41509568)
chr4 (194-250)||(55520346-55520402)
[»] chr3 (19 HSPs)
chr3 (111-252)||(19156736-19156879)
chr3 (111-171)||(53077370-53077430)
chr3 (109-171)||(27941916-27941978)
chr3 (111-252)||(52447788-52447928)
chr3 (110-171)||(23045263-23045323)
chr3 (110-171)||(31885336-31885396)
chr3 (110-174)||(10994518-10994582)
chr3 (111-171)||(25071278-25071338)
chr3 (118-252)||(15760509-15760645)
chr3 (111-171)||(6025147-6025206)
chr3 (324-365)||(24928063-24928104)
chr3 (110-158)||(36640722-36640769)
chr3 (110-158)||(30376916-30376963)
chr3 (111-158)||(1420207-1420253)
chr3 (111-158)||(22917793-22917839)
chr3 (194-245)||(24928166-24928217)
chr3 (324-365)||(19156943-19156984)
chr3 (111-171)||(1424344-1424403)
chr3 (194-246)||(53077291-53077343)
[»] scaffold0601 (1 HSPs)
scaffold0601 (111-171)||(6428-6488)
[»] scaffold0308 (1 HSPs)
scaffold0308 (111-171)||(12490-12550)
[»] scaffold0093 (2 HSPs)
scaffold0093 (111-171)||(50565-50625)
scaffold0093 (194-245)||(50656-50707)
[»] scaffold0743 (1 HSPs)
scaffold0743 (112-158)||(3696-3741)
[»] scaffold0295 (1 HSPs)
scaffold0295 (126-171)||(4627-4672)
[»] scaffold0229 (1 HSPs)
scaffold0229 (194-250)||(14163-14219)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 23664674 - 23664391
Alignment:
Q  13 aatatctgatacaagatttgaagtaataatcaatcgttgtccttagtgaaaaatcatttccatctacatggatatcataaaaaatcttgacgtacattca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23664674 aatatctgatacaagatttgaagtaataatcaatcgttgtccttagtgaaaaatcatttccatctacatggatatcataaaaaatcttgacctacattca 23664575  T
Q  113 gggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggcccnnnnnnnnnttaagctggagggtgtatatagaaatatt 212  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  23664574 gggccggccctagggcatacgccacgagtgcgacggcctagggcccttgtcggtaggggcccaaaaaaaaattaagctggagggtgtatatagaaatatt 23664475  T
Q  213 tggattttgggggatatgtataacaaaattctctgaaaagtttaggaatttagggtttaggattttgacatgatatactaatgg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23664474 tggattttgggggatatgtataacaaaattctctgaaaagtttaggaatttagggtttaggattttgacatgatatagtaatgg 23664391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 25094886 - 25094980
Alignment:
Q  202 atagaaatatttggattttgggggatatgtataacaaaattctctgaaaagtttaggaatttagggtttaggattttgacatgatatactaatgg 296  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  25094886 atagaaatatttggattttgggggatatgtatagcaaaattctctgaaaagtttaggagtttagggtttaggattttgacatgatatagtaatgg 25094980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 5049096 - 5049156
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||    
T  5049096 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggg 5049156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 42721893 - 42721954
Alignment:
Q  109 ttcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  42721893 ttcagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 42721954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 22070144 - 22070205
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||| || |||||||||    
T  22070144 tcagggccggccctagggcataggccgtgagtgcgacggcctagggcccatgccggtagggg 22070205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 21906021 - 21906081
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| || || |||||||||    
T  21906021 cagggccggccctagggcataggccgcgagtgcgacggcctagggtccatgccggtagggg 21906081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 321 - 365
Target Start/End: Complemental strand, 23664359 - 23664315
Alignment:
Q  321 agagagatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23664359 agagagatttgttatatatatcccatgcagcacaaatatttctat 23664315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 26221341 - 26221400
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||    
T  26221341 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgtcggtagggg 26221400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 36296358 - 36296417
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  36296358 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 36296417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 28946260 - 28946201
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||||||    
T  28946260 cagggccggccctagg-cataggccacgagtgcgacggcctaaggcccatgccggtagggg 28946201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 48999050 - 48999175
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagg-ggcccnnnnnnnnnttaagct-ggagggtgtatatagaaa 208  Q
    ||||| ||||| ||||||||||||| |||||||||||||||||||||| ||  |||||| |||||         ||||| |  | |||||||||||||||    
T  48999050 cagggtcggccatagggcataggccgcgagtgcgacggcctagggcccatgctggtaggaggcccaaattttttttaaggtaagggggtgtatatagaaa 48999149  T
Q  209 tatttggattttgggggatatgtata 234  Q
    ||||||||||||||||| ||| ||||    
T  48999150 tatttggattttggggggtatatata 48999175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 1347168 - 1347121
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  1347168 tcagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 1347121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 321 - 361
Target Start/End: Original strand, 25095012 - 25095052
Alignment:
Q  321 agagagatttgttatatatatcccatgcagcacaaatattt 361  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  25095012 agagagatttgctatatatatcccatgcagcacaaatattt 25095052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 27431252 - 27431192
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||| |||||||||||||||||| |||||| ||||||||||| ||| || |||||||||    
T  27431252 cagggctggccctagggcataggccgcgagtgtgacggcctaggacccatgccggtagggg 27431192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 27431168 - 27431114
Alignment:
Q  192 gagggtgtatatagaaatatttggattttgggggatatgtataacaaaattctct 246  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||  ||||||||||    
T  27431168 gagggtgtatatagaaatatttggatttcgggagatatatatagaaaaattctct 27431114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 44310182 - 44310244
Alignment:
Q  190 tggagggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||| ||||||||||||||||  |||||||||  || |||| |||||||||||||||||    
T  44310182 tggagggtatatatagaaatatttgatttttggggggaatatatagcaaaattctctgaaaag 44310244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 48596721 - 48596663
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||||||||||||||||||||||||  |||||||| ||||  ||||||||||| ||||    
T  48596721 gggtgtatatagaaatatttggatttcaggggatatatatagaaaaattctctgcaaag 48596663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 34307905 - 34307849
Alignment:
Q  114 ggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||| |||||||| |||||||||||||||||||||| || || ||||||    
T  34307905 ggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccgttagggg 34307849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 48596599 - 48596558
Alignment:
Q  324 gagatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  48596599 gagatttgttatatatatcccatgtaacacaaatatttctat 48596558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 48596806 - 48596746
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||| |||||||| | ||||||||||||||||| |||| || | |||||||    
T  48596806 cagggccggccctaaggcataggtcgcgagtgcgacggcctagagcccatgccagtagggg 48596746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 9022867 - 9022918
Alignment:
Q  120 ccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||  |||||||| |||||||||||| || |||||||||    
T  9022867 ccctagggcataggccgggagtgcgatggcctagggcccatgccggtagggg 9022918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 9022943 - 9023000
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||||||||||||||| |||||| || ||| |||| | |||||||||||||||    
T  9022943 gggtgtatatagaaatatttggtttttggagg-tatatatagcgaaattctctgaaaag 9023000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 9956586 - 9956631
Alignment:
Q  112 agggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||||    
T  9956586 agggccggccctagg-cacaggccgcgagtgcgacggcctagggccc 9956631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 32179238 - 32179194
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggc 156  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||||    
T  32179238 cagggccggccttagg-cataggccgcgagtgcgacggcctagggc 32179194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 5049182 - 5049233
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctct 246  Q
    |||||||||||||||||||||||||| ||||| ||| ||||  ||||||||||    
T  5049182 gggtgtatatagaaatatttggatttcggggg-tatatatagaaaaattctct 5049233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 109 - 252
Target Start/End: Complemental strand, 5579068 - 5578923
Alignment:
Q  109 ttcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggta-ggggcccnnnnnnnnnttaagctggagggtgtatatagaa 207  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||         ||||||||||||| ||||||||||    
T  5579068 ttcagggccggccctagggcataggccacgagtgcgacgggctagggcccttgccggtagggggcccaaaaaaaaattaagctggagggcgtatatagaa 5578969  T
Q  208 atatttggattttgg-gggatatgtataacaaaattctctgaaaag 252  Q
    |||||| |||||||| ||| |||||||| ||||||||| |||||||    
T  5578968 atatttagattttggaggggtatgtatatcaaaattctttgaaaag 5578923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 42879239 - 42879381
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggccc-nnnnnnnnnttaagctggagggtgtatatagaaat 209  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||          ||||| || |||||||||||||||||    
T  42879239 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggcccaaaagtttttttaaggtgtagggtgtatatagaaat 42879338  T
Q  210 atttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||||||||| |||| ||| |||| ||||||| |||||||||    
T  42879339 atttggattttagggggtatatatagcaaaattatctgaaaag 42879381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 111 - 252
Target Start/End: Complemental strand, 9410013 - 9409870
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg--cccnnnnnnnnnttaagctggagggtgtatatagaaa 208  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||  ||          ||||| || |||| |||||||||||    
T  9410013 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgtcggtagggggtccaaaagtttttttaaggtgtagggggtatatagaaa 9409914  T
Q  209 tatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||||||||||||||| ||| |||| ||||||| |||||||||    
T  9409913 tatttggattttggggggtatatatagcaaaattatctgaaaag 9409870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 13490034 - 13490175
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggta-ggggcccnnnnnnnnnttaagctggagggtgtatatagaaat 209  Q
    |||||||||||||| | |||||||| ||||||||||||||||||||||||| ||||| |||||||         ||||| ||| ||||||||||| ||||    
T  13490034 cagggccggccctaagccataggccgcgagtgcgacggcctagggcccttgccggtagggggcccaatttttttttaagatgg-gggtgtatataaaaat 13490132  T
Q  210 atttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||||||||||||||  || |||| |||||||| ||||||||    
T  13490133 atttggattttggggggaatatatagcaaaattcactgaaaag 13490175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 246
Target Start/End: Original strand, 2676608 - 2676745
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggta-ggggcccnnnnnnnnnttaagct-ggagggtgtatatagaaa 208  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| |||||||         ||||| |  | |||||||||||||||    
T  2676608 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaaaaaatctttaaggtaagggggtgtatatagaaa 2676707  T
Q  209 tatttggattttgggggatatgtataacaaaattctct 246  Q
    ||||||||||| ||||||||| ||||  ||||||||||    
T  2676708 tatttggatttcgggggatatatatagaaaaattctct 2676745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 111 - 252
Target Start/End: Complemental strand, 39537845 - 39537705
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggta-ggggcccnnnnnnnnnttaagctggagggtgtatatagaaat 209  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||| |||||||         |||||  || |||||||| || ||||    
T  39537845 cagggccggccctagggcataggccgcaagtgcgacggcctagggcctttgccggtagggggcccaaattttttttaaggagg-gggtgtatgtaaaaat 39537747  T
Q  210 atttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||||||||| ||| |||| |||||||||||||||||    
T  39537746 atttggattttggggg-tatatatagcaaaattctctgaaaag 39537705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 7849976 - 7850039
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggccc 174  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||    
T  7849976 tcagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtaggggccc 7850039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 18888714 - 18888771
Alignment:
Q  114 ggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||||||||| |||||||||||||||||||||| || |||||||||    
T  18888714 ggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggg 18888771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 38490702 - 38490761
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  38490702 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 38490761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 14652182 - 14652120
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggccc 174  Q
    ||||||||| |||||| |||||||||||||||||| |||||||||||| || ||||||||||||    
T  14652182 cagggccggtcctagg-cataggccacgagtgcgatggcctagggcccatgccggtaggggccc 14652120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 13383062 - 13383003
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || ||||||    
T  13383062 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccgttagggg 13383003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 6950353 - 6950399
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  6950353 cagggccggtcctagg-cataggccacgagtgcgacggcctagggccc 6950399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 41869418 - 41869464
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  41869418 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 41869464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 23962580 - 23962637
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||| ||||    
T  23962580 gggtgtatatagaaatatttggatttcggggggtatatataa-aaaattctctgcaaag 23962637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 326 - 365
Target Start/End: Complemental strand, 16040438 - 16040399
Alignment:
Q  326 gatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  16040438 gatttgctatatatatcccatgtagcacaaatatttctat 16040399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 9409806 - 9409765
Alignment:
Q  324 gagatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    ||||||| ||||||||||||||||  ||||||||||||||||    
T  9409806 gagatttattatatatatcccatgtggcacaaatatttctat 9409765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 39537642 - 39537602
Alignment:
Q  324 gagatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    |||||||| |||||||||||||||||||||||| ||||||||    
T  39537642 gagatttgctatatatatcccatgcagcacaaa-atttctat 39537602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 13382977 - 13382937
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtata 234  Q
    ||||| |||||||||||||||||||||| ||||||| ||||    
T  13382977 gggtgcatatagaaatatttggattttgagggatatatata 13382937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 43324167 - 43324108
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| ||||||||  | ||||||||||||||||||| || | |||||||    
T  43324167 cagggccggccctagg-cataggccgggggtgcgacggcctagggcccatgcccgtagggg 43324108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 114 - 252
Target Start/End: Complemental strand, 20395243 - 20395105
Alignment:
Q  114 ggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggc-ccnnnnnnnnnttaagctggagggtgtatatagaaatatt 212  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||  ||         |||||||||||||||||||||||||||||    
T  20395243 ggccagccctagggcataggccacgagtgcgacggcctaggtcccttgccggtagggggtccaaaaaaaatttaagctggagggtgtatatagaaatatt 20395144  T
Q  213 tggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||||||||||| |||||||| ||| |||||||||||||    
T  20395143 tggattttggggg-tatgtatagcaacattctctgaaaag 20395105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 109 - 252
Target Start/End: Complemental strand, 8389762 - 8389617
Alignment:
Q  109 ttcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggta-ggggcccnnnnnnnnnttaagct-ggagggtgtatataga 206  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| |||||||         ||||| |  | |||||||||||||    
T  8389762 ttcagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaaaaaatctttaaggtaagggggtgtatataga 8389663  T
Q  207 aatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||||||||||| ||||||||||||||  ||||||||||| ||||    
T  8389662 aatatttggatttcgggggatatgtatagaaaaattctctgtaaag 8389617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 18667009 - 18667072
Alignment:
Q  108 attcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18667009 attcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgccggtagggg 18667072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 13753759 - 13753819
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  13753759 cagggccggccctagggcataggccgcgagtgcgacagcctagggcccttgccggtagggg 13753819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 110 - 252
Target Start/End: Complemental strand, 35478437 - 35478295
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggta-ggggcccnnnnnnnnnttaagctggagggtgtatatagaaa 208  Q
    |||||||| ||||||||||||||||| |||||||||||| ||||| ||||||  |||| |||||||         ||||||| |||||||| ||||||||    
T  35478437 tcagggccagccctagggcataggccgcgagtgcgacggactaggacccttgctggtagggggcccaaaaaaaatttaagct-gagggtgtttatagaaa 35478339  T
Q  209 tatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||||| |||| ||| ||||  |||||||||| |||||    
T  35478338 tatttggattttagggggtatatatagtaaaattctctaaaaag 35478295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 43823964 - 43824024
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||    
T  43823964 cagggccggtcctagggcataggccacgagtgcgacggcctagggcccatgccggtagggg 43824024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 4539512 - 4539572
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || ||| |||||    
T  4539512 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccgggagggg 4539572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 8069234 - 8069293
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  8069234 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 8069293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 48238116 - 48238175
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  48238116 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 48238175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 48636360 - 48636419
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  48636360 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 48636419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 31072994 - 31072929
Alignment:
Q  105 tacattcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |  |||||||||    
T  31072994 tacaatcagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatcccggtagggg 31072929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 15680168 - 15680122
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  15680168 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 15680122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 6189830 - 6189785
Alignment:
Q  126 ggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||||||||||||| || | |||||||    
T  6189830 ggcataggccacgagtgcgacggcctagggcccatgccagtagggg 6189785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 18667218 - 18667259
Alignment:
Q  324 gagatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    |||||||| |||||||||||||||||||||||| ||||||||    
T  18667218 gagatttgctatatatatcccatgcagcacaaaaatttctat 18667259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 19312389 - 19312329
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||| ||||||||  |||||||||||||||||| || || |||||||||    
T  19312389 tcagggccggccctagg-cataggccgtgagtgcgacggcctagggtccatgccggtagggg 19312329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 43824055 - 43824112
Alignment:
Q  195 ggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||||||||||||||||||||||||||||| ||| ||||  |  |||||||||||||    
T  43824055 ggtgtatatagaaatatttggattttggggggtatatatagaagtattctctgaaaag 43824112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 44733170 - 44733219
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggccctt 160  Q
    ||||||||||||||||||||||| |  ||||||||||||||| |||||||    
T  44733170 cagggccggccctagggcataggtcgggagtgcgacggcctaaggccctt 44733219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 20395030 - 20394998
Alignment:
Q  333 tatatatatcccatgcagcacaaatatttctat 365  Q
    |||||||||||||||||||||||||||||||||    
T  20395030 tatatatatcccatgcagcacaaatatttctat 20394998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 37549234 - 37549175
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||||| || | |||||||    
T  37549234 cagggccggccctagg-cataggccaggggtgcgacggcctagggcccatgcccgtagggg 37549175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 43179800 - 43179744
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaa 250  Q
    ||||| |||||||||||||||||||||||| | | ||||||||||| ||| ||||||    
T  43179800 gggtgcatatagaaatatttggattttgggaggtgtgtataacaaagttcactgaaa 43179744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 12379303 - 12379349
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    |||||||||||| ||| |||||||| ||||||||||||||||||||||    
T  12379303 cagggccggcccaagg-cataggccgcgagtgcgacggcctagggccc 12379349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 13753843 - 13753901
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||| ||||||| |||||||||||| |||| ||| ||||  ||||||||||||||||    
T  13753843 gggtgtttatagaagtatttggatttttgggggtatatatagtaaaattctctgaaaag 13753901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 18667096 - 18667154
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||| |||||||||||||||||||| |||| ||| ||||  || |||||||||||||    
T  18667096 gggtgtttatagaaatatttggattttagggggtatatatagtaacattctctgaaaag 18667154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 135356 - 135416
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||| |||||| |  ||||||||||||||||||||| || | |||||||    
T  135356 tcagggccggccctagg-cataggtcgggagtgcgacggcctagggcccatgcctgtagggg 135416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 35478231 - 35478190
Alignment:
Q  324 gagatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    |||||| | |||||||||||||||||||||||| ||||||||    
T  35478231 gagattcgctatatatatcccatgcagcacaaaaatttctat 35478190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 44733259 - 44733311
Alignment:
Q  199 tatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||| |||||||||| |||||||| |||| || |||||||||||||||||||    
T  44733259 tatataaaaatatttggtttttgggg-atatatagaacaaaattctctgaaaag 44733311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 45446491 - 45446446
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggc 156  Q
    |||||||||||||||| |||||||| |||||| |||| ||||||||    
T  45446491 cagggccggccctaggccataggccgcgagtgtgacgacctagggc 45446446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 10016190 - 10016127
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggccc 174  Q
    ||||||||||||||||| ||||||||    ||||||||||||||||||| || | ||||||||||    
T  10016190 tcagggccggccctagg-cataggccggaggtgcgacggcctagggcccatgcccgtaggggccc 10016127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 365
Target Start/End: Original strand, 13753974 - 13754006
Alignment:
Q  333 tatatatatcccatgcagcacaaatatttctat 365  Q
    |||||||||||||||||||||||| ||||||||    
T  13753974 tatatatatcccatgcagcacaaaaatttctat 13754006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 31072902 - 31072874
Alignment:
Q  194 gggtgtatatagaaatatttggattttgg 222  Q
    |||||||||||||||||||||||||||||    
T  31072902 gggtgtatatagaaatatttggattttgg 31072874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 111 - 252
Target Start/End: Complemental strand, 7973442 - 7973299
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg--cccnnnnnnnnnttaagctggagggtgtatatagaaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||  ||          ||||| || |||| |||||||||||    
T  7973442 cagggccggccctagggcataggccacgagtgcgacggcctagggcccatgccggtagggggcccaaaagtttttttaaggtgtagggggtatatagaaa 7973343  T
Q  209 tatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||    
T  7973342 tatttggattttggggggtatatatagcaaaattctctgaaaag 7973299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 111 - 250
Target Start/End: Original strand, 16729378 - 16729516
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggcccnnnnnnnnnttaagctggagggtgtatatagaaata 210  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||         |||||||||| ||||||||||||||||    
T  16729378 cagggccggccctagggcataggtcacgagtgcgacggcctagggcccttgccggtaggggcccaaaacaaatttaagctgga-ggtgtatatagaaata 16729476  T
Q  211 tttggattttgggggatatgtataacaaaattctctgaaa 250  Q
    ||||||||| | | | |||||||| ||||| | |||||||    
T  16729477 tttggatttggagcggtatgtatagcaaaactatctgaaa 16729516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 3762338 - 3762399
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||    
T  3762338 tcagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggg 3762399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 1981234 - 1981294
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||    
T  1981234 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggg 1981294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 7264091 - 7264031
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  7264091 cagggccggccctagggcataggccacgagtgcgacggtctagggcccttgctggtagggg 7264031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 45117137 - 45117197
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||    
T  45117137 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggg 45117197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 112 - 252
Target Start/End: Original strand, 39905874 - 39906014
Alignment:
Q  112 agggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg-cccnnnnnnnnnttaagctggagggtgtatatagaaata 210  Q
    ||||| ||||||| |||||||||| ||||| |||||||||| |||||||  ||||||||| |||         ||||| ||| |||||||| ||||||||    
T  39905874 agggctggccctacggcataggccgcgagttcgacggcctacggcccttaccggtagggggcccaatttttttttaaggtgg-gggtgtatgtagaaata 39905972  T
Q  211 tttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||||||||||||| ||| |||| ||| |||||||||||||    
T  39905973 tttggattttggggggtatatatagcaacattctctgaaaag 39906014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 40971088 - 40971149
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||||||    
T  40971088 tcagggccggccctagggcataggccgcgagtgcgatggcctagggcccttgctggtagggg 40971149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 6927983 - 6927924
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  6927983 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 6927924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 252
Target Start/End: Complemental strand, 4432531 - 4432389
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg-cccnnnnnnnnnttaagctggagggtgtatatagaaat 209  Q
    |||||||||||| |||||||||||| | | ||||||||||||||| ||||| |||| |||| |||         ||||| ||| ||||||||||| ||||    
T  4432531 cagggccggcccaagggcataggccgcaattgcgacggcctagggtccttgccggtggggggcccaaaaaacttttaagatggggggtgtatataaaaat 4432432  T
Q  210 atttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||||||||| ||| |||| |||| |||  |||||||    
T  4432431 atttggattttggggggtatatatagcaaagttcattgaaaag 4432389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 11995159 - 11995100
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| || |||||||||    
T  11995159 cagggccggccctagg-cataggccacgagtgcgatggcctagggcccatgccggtagggg 11995100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 16729578 - 16729622
Alignment:
Q  321 agagagatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||    
T  16729578 agagagatttgctatatatatcccatgcagcacaaaaatttctat 16729622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 31597165 - 31597224
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || ||||||    
T  31597165 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccgttagggg 31597224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 7263886 - 7263845
Alignment:
Q  324 gagatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    |||||||| |||||||||||||||||||||||| ||||||||    
T  7263886 gagatttgctatatatatcccatgcagcacaaaaatttctat 7263845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 3509847 - 3509906
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||| |||||||||| |||||||| |||||||||||||||||| ||| |||| |||||||    
T  3509847 cagggtcggccctagg-cataggccgcgagtgcgacggcctaggacccatgtctgtagggg 3509906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 18327042 - 18327096
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctga 248  Q
    ||||||||||||||||| |||||||||||||  | | |||| |||||||||||||    
T  18327042 gggtgtatatagaaatagttggattttggggtgtctatatagcaaaattctctga 18327096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 28508937 - 28508975
Alignment:
Q  133 gccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||||||||||||| || |||||||||    
T  28508937 gccacgagtgcgacggcctagggcccatgccggtagggg 28508975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 40971173 - 40971231
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||| |||||||| ||||||||||||| |||| ||| ||||  ||||||||||||||||    
T  40971173 gggtatatatagatatatttggattttagggggtatatatagtaaaattctctgaaaag 40971231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 1131416 - 1131531
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggta-ggggcccnnnnnnnnnttaagctggagggtgtatatagaaat 209  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||||||         ||||||||||||||||||||||||||    
T  1131416 cagggccggccctagggcataggccaagagtgcgacggcctagagcccttgccggtagggggcccaaaaaaaatttaagctggagggtgtatatagaaat 1131515  T
Q  210 atttggattttggggg 225  Q
    |||||||| |||||||    
T  1131516 atttggatattggggg 1131531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 20990100 - 20990240
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggcccnnnnnnnnnttaagctggagggtgtatatagaaata 210  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||         ||||  | | |||||| ||||||||||    
T  20990100 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgccggtaggggcccaaattttttttaatgtag-gggtgtttatagaaata 20990198  T
Q  211 tttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||| |||| ||| ||||  || |||||||||||||    
T  20990199 tttggattttagggggtatatatagtaacattctctgaaaag 20990240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 111 - 246
Target Start/End: Original strand, 1603013 - 1603150
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggta-ggggcccnnnnnnnnnttaagct-ggagggtgtatatagaaa 208  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| |||| ||         ||||| |  | |||||||||||||||    
T  1603013 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggtccaaaaaatctttaaggtaagggggtgtatatagaaa 1603112  T
Q  209 tatttggattttgggggatatgtataacaaaattctct 246  Q
    ||||||||||| ||||||||| ||||  ||||||||||    
T  1603113 tatttggatttcgggggatatatatagaaaaattctct 1603150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 252
Target Start/End: Original strand, 18674997 - 18675139
Alignment:
Q  112 agggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg--cccnnnnnnnnnttaagctggagggtgtatatagaaat 209  Q
    ||||||||||||| |||||||||| || |||||||||||||||||||||| |||||||||  ||          ||||| ||| | ||||||||||||||    
T  18674997 agggccggccctaaggcataggccgcgggtgcgacggcctagggcccttgccggtagggggtccaaatttgtttttaaggtggggagtgtatatagaaat 18675096  T
Q  210 atttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||  ||||||||| |||| |||| |||| ||||||||||||    
T  18675097 atttaaattttggggaatatatatagcaaacttctctgaaaag 18675139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 22012575 - 22012515
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||    
T  22012575 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggg 22012515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 34040470 - 34040410
Alignment:
Q  109 ttcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagg 169  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||| || |||||||    
T  34040470 ttcaaggccggccctagggcatagaccacgagtgcgacggcctagggcccatgccggtagg 34040410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 34043181 - 34043324
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg-cccnnnnnnnnnttaagctggagg-gtgtatatagaaa 208  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||| || ||||||||| |||         ||||| |   || |||||||||||||    
T  34043181 cagggccggccctagggcataggccgcgagtgtgacggcctagggcccatgccggtagggggcccaaaaattttttaaggtaagggagtgtatatagaaa 34043280  T
Q  209 tatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||||||||| ||||| ||| ||||  ||||||||||| ||||    
T  34043281 tatttggatttcgggggttatatatagaaaaattctctgtaaag 34043324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 21442393 - 21442537
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggta-ggggcccnnnnnnnnnttaagct--ggagggtgtatatagaa 207  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||| || || ||||| |||||||         ||||| |  ||  |||||||||||||    
T  21442393 cagggccggccctagagcataggccgcgagtgcgacggcctagggtccatgccggtagggggcccaaattttttttaagataagggaggtgtatatagaa 21442492  T
Q  208 atatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||||| ||||||||| ||||  || |||||||| ||||    
T  21442493 atatttggatttcgggggatatatatagaaacattctctgcaaag 21442537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 14677386 - 14677445
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || |||||||||    
T  14677386 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccggtagggg 14677445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 15059811 - 15059871
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||| |||  |||||| |||||||||||||| ||||||||||||    
T  15059811 cagggccggccctagggcatatgccgggagtgcaacggcctagggcccatgtcggtagggg 15059871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 33517040 - 33516981
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||| || |||||||||    
T  33517040 cagggccggccctagg-cataggccacgagtgcaacggcctagggcccatgccggtagggg 33516981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 1131620 - 1131664
Alignment:
Q  321 agagagatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||    
T  1131620 agagagatttgctatatatatcccatgcagcacaaaaatttctat 1131664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 31475220 - 31475173
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  31475220 tcagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 31475173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 1422674 - 1422741
Alignment:
Q  185 taagctggagggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||| ||| |||||||| ||||||||||||||||||||||   || |||| |||||||||||||||||    
T  1422674 taaggtggggggtgtatttagaaatatttggattttggggataatatatagcaaaattctctgaaaag 1422741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 9534376 - 9534331
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcc 157  Q
    |||||||||||||||| |||||||| |||||||||||||||| ||||    
T  9534376 cagggccggccctagg-cataggccgcgagtgcgacggcctaaggcc 9534331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 26817090 - 26817147
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||||||||||||| ||||||||||| ||  |||| |||||||||||| ||||    
T  26817090 gggtgtatatagaaatattt-gattttggggggtaaatatagcaaaattctctggaaag 26817147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 1422805 - 1422846
Alignment:
Q  324 gagatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    |||||||| ||||||||||||||||||||||||  |||||||    
T  1422805 gagatttgctatatatatcccatgcagcacaaaactttctat 1422846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 21442601 - 21442642
Alignment:
Q  324 gagatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    |||||||| ||||||||||||||| | |||||||||||||||    
T  21442601 gagatttgctatatatatcccatgtaacacaaatatttctat 21442642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 26213238 - 26213181
Alignment:
Q  195 ggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||||||||||||   |||| |||| ||| |||| |||||||||||||||||    
T  26213238 ggtgtatatagaaatatttaatttttagggggtatatatagcaaaattctctgaaaag 26213181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 1213000 - 1213056
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaa 250  Q
    |||||||||||||||||||||  ||||||||| ||| |||| |||| ||| ||||||    
T  1213000 gggtgtatatagaaatatttgatttttggggggtatttatagcaaagttcactgaaa 1213056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 110 - 252
Target Start/End: Original strand, 2553701 - 2553843
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggccc-nnnnnnnnnttaagctggagggtgtatatagaaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||          ||||| | | |||| ||||||||||    
T  2553701 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgccggtaggggcccaattttttttttaaggtag-gggtatatatagaaa 2553799  T
Q  209 tatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||||| |||| ||| ||||  ||||||||||||||||    
T  2553800 tatttggattttagggggtatatatagtaaaattctctgaaaag 2553843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 110 - 252
Target Start/End: Complemental strand, 41826423 - 41826281
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggccc-nnnnnnnnnttaagctggagggtgtatatagaaa 208  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||          ||||| | | |||| ||||||||||    
T  41826423 tcagggccggccctagggcataggccacgagtacgacggcctagggcccttgccggtaggggcccaattttttttttaaggtag-gggtatatatagaaa 41826325  T
Q  209 tatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||||| |||| ||| ||||  ||||||||||||||||    
T  41826324 tatttggattttagggggtatatatagtaaaattctctgaaaag 41826281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 19685439 - 19685564
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagg-ggcccnnnnnnnnnttaagct-ggagggtgtatatagaaa 208  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||         ||||| |  | |||||||||||||||    
T  19685439 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggaggcccaaattttttttaaggtaagggggtgtatatagaaa 19685538  T
Q  209 tatttggattttgggggatatgtata 234  Q
    ||||||||||||||||| ||| ||||    
T  19685539 tatttggattttggggggtatatata 19685564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 245
Target Start/End: Complemental strand, 33015654 - 33015518
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggta-ggggcccnnnnnnnnnttaagct-ggagggtgtatatagaaa 208  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||| || ||||| |||||||         ||||| |  | |||||||||||||||    
T  33015654 cagggccggccctagggcataggccgcgagtgtgacggcctagggcccatgccggtagggggcccaaaatttttttaaggtaagggggtgtatatagaaa 33015555  T
Q  209 tatttggattttgggggatatgtataacaaaattctc 245  Q
    ||||||||||| ||||||||| ||||  |||||||||    
T  33015554 tatttggatttcgggggatatatatagaaaaattctc 33015518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 44314502 - 44314442
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||    
T  44314502 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggg 44314442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 44322681 - 44322621
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||    
T  44322681 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggg 44322621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 22576443 - 22576382
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| || |||||||||    
T  22576443 tcagggccagccctagggcataggccatgagtgcgacggcctagggcccatgccggtagggg 22576382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 45277928 - 45277868
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  45277928 tcagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 45277868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 90775 - 90716
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  90775 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 90716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 18781623 - 18781564
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  18781623 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 18781564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 7880775 - 7880715
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||    
T  7880775 tcagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccgttagggg 7880715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 2565275 - 2565334
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || |||||||||    
T  2565275 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccggtagggg 2565334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 11199658 - 11199603
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaa 250  Q
    |||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||    
T  11199658 gggtgtatatagaaatatttggattttggggg-tatatatagcaaaattctctgaaa 11199603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 40709951 - 40709899
Alignment:
Q  122 ctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggccc 174  Q
    |||||||||||||| |||||||||||||||||||||| || ||||||||||||    
T  40709951 ctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggccc 40709899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 19674456 - 19674516
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||| || |||||||||    
T  19674456 tcagggccggccctagg-cataggtcacaagtgcgacggcctagggcccatgccggtagggg 19674516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 18583004 - 18582958
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  18583004 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 18582958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 252
Target Start/End: Original strand, 6221032 - 6221171
Alignment:
Q  115 gccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg-cccnnnnnnnnnttaagct--ggagggtgtatatagaaatat 211  Q
    ||||||||||| ||||||||| |||||||||||||||| ||||  || ||||||||| |||         ||||| |  ||||| ||||||||||| |||    
T  6221032 gccggccctagagcataggccgcgagtgcgacggcctaaggcctatgccggtagggggcccaaaaaatctttaaggtaaggagg-tgtatatagaagtat 6221130  T
Q  212 ttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||| ||||||||| ||||  ||||||||||| ||||    
T  6221131 ttggatttcgggggatatatatagaaaaattctctgtaaag 6221171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 27862179 - 27862122
Alignment:
Q  195 ggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||| |||||||||||||||||||| ||| ||||  ||||||| ||||||||    
T  27862179 ggtgtatataaaaatatttggattttggggggtatatatagtaaaattcactgaaaag 27862122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 33015447 - 33015406
Alignment:
Q  324 gagatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  33015447 gagatttgttatatatatcccatgtaacacaaatatttctat 33015406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 7443879 - 7443947
Alignment:
Q  184 ttaagctggagggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||| ||| ||||||||||| ||||||||||||||||| || ||| |||| |||||||| | ||||||    
T  7443879 ttaagatggggggtgtatataaaaatatttggattttggtgggtatatatagcaaaattcaccgaaaag 7443947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 14903684 - 14903740
Alignment:
Q  115 gccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||| ||||||||  | ||||||||||||| |||||||| |||||||||    
T  14903684 gccggccctaggccataggccgggggtgcgacggcctatggcccttgccggtagggg 14903740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 22576358 - 22576302
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaa 250  Q
    ||||||||||||||||||||||||||  |||| ||  |||| |||||||||||||||    
T  22576358 gggtgtatatagaaatatttggatttgtgggggtacatatagcaaaattctctgaaa 22576302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 38696798 - 38696844
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    |||||||||||||||| |||||||  ||||||||||||||||||||||    
T  38696798 cagggccggccctagg-cataggctgcgagtgcgacggcctagggccc 38696844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 2553906 - 2553947
Alignment:
Q  324 gagatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    |||||| | |||||||||||||||||||||||| ||||||||    
T  2553906 gagattcgctatatatatcccatgcagcacaaaaatttctat 2553947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 10022563 - 10022607
Alignment:
Q  113 gggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||||    
T  10022563 gggctggccctagg-cataggccaggagtgcgacggcctagggccc 10022607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 41826218 - 41826177
Alignment:
Q  324 gagatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    |||||| | |||||||||||||||||||||||| ||||||||    
T  41826218 gagattcgctatatatatcccatgcagcacaaaaatttctat 41826177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 33054398 - 33054457
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggg 170  Q
    ||||||||||||||||| |||||| |  | |||||||||||||||||||||| || |||||    
T  33054398 tcagggccggccctaggccataggtcggg-gtgcgacggcctagggcccttgccgataggg 33054457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 252
Target Start/End: Complemental strand, 89518 - 89377
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggta-ggggcccnnnnnnnnnttaagctggagggtgtatatagaaa 208  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||         ||||| ||||  ||||||||| |||    
T  89518 tcagggccggccctaaggcataggccccgagtgcgacggcctagggcccttgtcggtagggggcccaaattttttttaagatgga--gtgtatataaaaa 89421  T
Q  209 tatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||||||||||||| | ||| |||| |||||||| ||||||||    
T  89420 tatttggattttgggaggtatatatagcaaaattcactgaaaag 89377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 252
Target Start/End: Complemental strand, 88092 - 87950
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggcccnnnnnnnnnttaagctggagggtgtatatagaaat 209  Q
    ||||||||||| ||| |||||||||| ||||||||||||||||||||||||  ||||||||| ||         ||||| ||| | ||||||||| ||||    
T  88092 tcagggccggcactaaggcataggccgcgagtgcgacggcctagggccctttccggtagggggcccaaaagaatttaagatggggagtgtatataaaaat 87993  T
Q  210 atttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||||||||| ||| |||| |||||||| ||||||||    
T  87992 atttggattttggggggtatatatagcaaaattcactgaaaag 87950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 252
Target Start/End: Complemental strand, 88568 - 88426
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggcccnnnnnnnnnttaagctggagggtgtatatagaaat 209  Q
    ||||||||||| ||| || ||||||| ||||||||||||||||||||||||  ||||||||| ||         ||||| ||| ||||||||||| ||||    
T  88568 tcagggccggcactaaggtataggccgcgagtgcgacggcctagggccctttccggtagggggcccaaaagaatttaagatggggggtgtatataaaaat 88469  T
Q  210 atttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||||||||| ||| |||| |||||||| ||||||||    
T  88468 atttggattttggggggtatatatagcaaaattcactgaaaag 88426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 252
Target Start/End: Complemental strand, 89044 - 88902
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggcccnnnnnnnnnttaagctggagggtgtatatagaaat 209  Q
    ||||||||||| ||| || ||||||| ||||||||||||||||||||||||  ||||||||| ||         ||||| ||| ||||||||||| ||||    
T  89044 tcagggccggcactaaggtataggccgcgagtgcgacggcctagggccctttccggtagggggcccaaaagaatttaagatggggggtgtatataaaaat 88945  T
Q  210 atttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||||||||| ||| |||| |||||||| ||||||||    
T  88944 atttggattttggggggtatatatagcaaaattcactgaaaag 88902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 252
Target Start/End: Complemental strand, 87618 - 87477
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggcccnnnnnnnnnttaagctggagggtgtatatagaaat 209  Q
    ||||||||||||||| ||||||||   ||||||||||||| ||||||||||  |||||||| |||         ||||| ||| ||||||||||| ||||    
T  87618 tcagggccggccctaaggcatagggtgcgagtgcgacggcgtagggccctttccggtagggtcccaaaagaat-ttaagatggggggtgtatataaaaat 87520  T
Q  210 atttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||||||||||||| |||| ||||||||  |||||||    
T  87519 atttggattttgggggatatatatagcaaaattcattgaaaag 87477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 252
Target Start/End: Complemental strand, 39480714 - 39480571
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg--cccnnnnnnnnnttaagctggagggtgtatatagaaa 208  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||  ||          ||||  || |||| |||||||||||    
T  39480714 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaaaagtttttttaaagtgtagggggtatatagaaa 39480615  T
Q  209 tatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||    
T  39480614 tatttggattttggggggtatatatagcaaaattctctgaaaag 39480571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 10095485 - 10095425
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||    
T  10095485 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggg 10095425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 28143897 - 28143837
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  28143897 tcagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 28143837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 51337307 - 51337366
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  51337307 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 51337366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 251
Target Start/End: Complemental strand, 6262079 - 6261938
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg--cccnnnnnnnnnttaagctggagggtgtatatagaaa 208  Q
    ||||||||||||||||||||||||| |||||||||||||||| || || || |||||||||  ||          ||||| || ||||||||||||||||    
T  6262079 cagggccggccctagggcataggccgcgagtgcgacggcctaagg-ccatgccggtagggggcccaaaagtttttttaaggtgtagggtgtatatagaaa 6261981  T
Q  209 tatttggattttgggggatatgtataacaaaattctctgaaaa 251  Q
    |||| ||||||||| || ||| ||||   ||||||||||||||    
T  6261980 tattaggattttggagggtatatatagtcaaattctctgaaaa 6261938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 7414188 - 7414128
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| |||| || |||||||||    
T  7414188 cagggccggtcctaggggataggccacgagtgcgacggcctagagcccatgccggtagggg 7414128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 7460269 - 7460209
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| |||| || |||||||||    
T  7460269 cagggccggtcctaggggataggccacgagtgcgacggcctagagcccatgccggtagggg 7460209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 14192764 - 14192705
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || |||||||||    
T  14192764 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccggtagggg 14192705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 3665837 - 3665779
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||||||||||||||| ||||||| | ||| ||||||||| ||||||||||||    
T  3665837 gggtgtatatagaaatatttggtttttgggaggtatatataacaaagttctctgaaaag 3665779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 49242561 - 49242622
Alignment:
Q  109 ttcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||||||||| | |||||||    
T  49242561 ttcagggccggccctagg-cataggccgggagtgcgacggcctagggcccttgcccgtagggg 49242622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 14033775 - 14033729
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  14033775 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 14033729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 36213396 - 36213443
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||||    
T  36213396 cagggccggccctagggcataggccgcgaatgcgacggcctacggccc 36213443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 29283431 - 29283372
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||| | ||||||||  | |||||||||||||||||||||| |||||||||    
T  29283431 cagggccggccctatg-cataggccgtgggtgcgacggcctagggcccttgccggtagggg 29283372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 36213454 - 36213521
Alignment:
Q  184 ttaagctggagggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||| || |||||||||||||||||||||||||||||| || ||| ||||  |||||| |||||||||    
T  36213454 ttaaggtgtagggtgtatatagaaatatttggattttggagg-tatatatagtaaaattatctgaaaag 36213521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 38052595 - 38052638
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctaggg 155  Q
    |||||||||||||||| |||||||| |||||||||||||||||||    
T  38052595 cagggccggccctagg-cataggccgcgagtgcgacggcctaggg 38052638  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 17648019 - 17647962
Alignment:
Q  113 gggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||| ||||||||  ||||||||||||||| |||||||| | |||||||    
T  17648019 gggccggccctagg-cataggccgggagtgcgacggcctacggcccttgcccgtagggg 17647962  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 10095402 - 10095342
Alignment:
Q  192 gagggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||||||||||||||||||||||||||  ||| |||| ||||  || |||||||| ||||    
T  10095402 gagggtgtatatagaaatatttggatttctgggaatatatatagaaacattctctgcaaag 10095342  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 41509568 - 41509528
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtata 234  Q
    |||||||||||||||||||||| ||||| ||||| ||||||    
T  41509568 gggtgtatatagaaatatttggtttttgcgggatgtgtata 41509528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 55520402 - 55520346
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaa 250  Q
    |||||||||||||||||||||  |||| |||||||  ||||||||| ||| ||||||    
T  55520402 gggtgtatatagaaatatttgattttttggggatacatataacaaagttcactgaaa 55520346  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 19156736 - 19156879
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggta-ggggcccnnnnnnnnnttaagct-ggagggtgtatatagaaa 208  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| |||||||         ||||| |  | |||||||||||||||    
T  19156736 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaaaaaatctttaaggtaagggggtgtatatagaaa 19156835  T
Q  209 tatttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    ||||||||||| ||||||||| ||||  ||||||||||| ||||    
T  19156836 tatttggatttcgggggatatatatagaaaaattctctgtaaag 19156879  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 53077430 - 53077370
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  53077430 cagggccggccctagggcataggccacgagtgcgacggcctagggcccatgccgatagggg 53077370  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 27941978 - 27941916
Alignment:
Q  109 ttcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||| || |||||||||    
T  27941978 ttcagggccggccctagggcataagccgcgagtgcgacggcctagggcccatgccggtagggg 27941916  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 52447788 - 52447928
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggcccnnnnnnnnnttaagctggagggtgtatatagaaata 210  Q
    ||||| ||||||||||||||||||| | ||||||||| ||||| ||||||| ||||||||| ||         ||||| | | |||||| ||||||||||    
T  52447788 cagggacggccctagggcataggccgcaagtgcgacgacctagagcccttgccggtagggggcccaaatttttttaaggtag-gggtgtttatagaaata 52447886  T
Q  211 tttggattttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||||||||| |||| ||| ||||  ||||||||||||||||    
T  52447887 tttggattttagggggtatatatagtaaaattctctgaaaag 52447928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 23045323 - 23045263
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  23045323 tcagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 23045263  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 31885396 - 31885336
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  31885396 tcagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 31885336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 10994582 - 10994518
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggccc 174  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||| || ||| ||||||||    
T  10994582 tcagggccggccctagggcataggccgcgagtgcgacggtctagggcccatgccggcaggggccc 10994518  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 25071278 - 25071338
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||  | |||||||||    
T  25071278 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccaagccggtagggg 25071338  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 118 - 252
Target Start/End: Original strand, 15760509 - 15760645
Alignment:
Q  118 ggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtaggggccc-nnnnnnnnnttaagct-ggagggtgtatatagaaatatttgg 215  Q
    |||||| ||||||||||| |||||||||||||||||||||| || ||||||||||||          ||||| |  | ||||||||||||||||||||||    
T  15760509 ggcccttgggcataggccgcgagtgcgacggcctagggcccatgccggtaggggcccaaaattgtttttaaggtaagggggtgtatatagaaatatttgg 15760608  T
Q  216 attttgggggatatgtataacaaaattctctgaaaag 252  Q
    |||| ||||| ||||||||  || |||||||| ||||    
T  15760609 atttcggggggtatgtatagaaatattctctgcaaag 15760645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 6025206 - 6025147
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || |||||||||    
T  6025206 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccggtagggg 6025147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 24928104 - 24928063
Alignment:
Q  324 gagatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  24928104 gagatttgctatatatatcccatgcagcacaaatatttctat 24928063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 36640722 - 36640769
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  36640722 tcagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 36640769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 30376916 - 30376963
Alignment:
Q  110 tcagggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  30376916 tcagggccgaccctagg-cataggccgcgagtgcgacggcctagggccc 30376963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 1420253 - 1420207
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    |||||||||||||||| |||||||  ||||||||||||||||||||||    
T  1420253 cagggccggccctagg-cataggctgcgagtgcgacggcctagggccc 1420207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 22917793 - 22917839
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    |||||||||||||||| |||||||| |||||| |||||||||||||||    
T  22917793 cagggccggccctagg-cataggccgcgagtgtgacggcctagggccc 22917839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 24928217 - 24928166
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctc 245  Q
    ||||||||||||||||||||||||||| |||| ||| ||||  |||||||||    
T  24928217 gggtgtatatagaaatatttggattttagggggtatatatagtaaaattctc 24928166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 19156943 - 19156984
Alignment:
Q  324 gagatttgttatatatatcccatgcagcacaaatatttctat 365  Q
    |||||||| ||||||||||||||| | |||||||||||||||    
T  19156943 gagatttgctatatatatcccatgtaacacaaatatttctat 19156984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 1424344 - 1424403
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||  |||||||  | ||||||||||||||||||| || |||||||||    
T  1424344 cagggccggccctaggt-ataggccgggggtgcgacggcctagggcccatgccggtagggg 1424403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 53077343 - 53077291
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctct 246  Q
    |||||||||||||||||||||||||| || || ||| ||||  ||||||||||    
T  53077343 gggtgtatatagaaatatttggatttcggagggtatatatagaaaaattctct 53077291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 6428 - 6488
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  6428 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgccggtagggg 6488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 12550 - 12490
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||| || |||||||||    
T  12550 cagggccggccctagggcataggccgcgagtgcgacgtcctagggcccatgccggtagggg 12490  T

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Target: scaffold0093 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 50565 - 50625
Alignment:
Q  111 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    ||||||||||||||||||||||||| | |||||||||||||||||| | || |||||||||    
T  50565 cagggccggccctagggcataggccgcaagtgcgacggcctagggcacatgccggtagggg 50625  T

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Target: scaffold0093; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 50656 - 50707
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctc 245  Q
    |||||||||||||||||||||||||| ||||| ||| ||||| |||||||||    
T  50656 gggtgtatatagaaatatttggatttcggggggtatatataaaaaaattctc 50707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 3741 - 3696
Alignment:
Q  112 agggccggccctagggcataggccacgagtgcgacggcctagggccc 158  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  3741 agggccggccctagg-cataggccatgagtgcgacggcctagggccc 3696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 4627 - 4672
Alignment:
Q  126 ggcataggccacgagtgcgacggcctagggcccttgtcggtagggg 171  Q
    |||||||||| ||||||||| ||||||||||||||  |||||||||    
T  4627 ggcataggccgcgagtgcgatggcctagggcccttaccggtagggg 4672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 14163 - 14219
Alignment:
Q  194 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaa 250  Q
    |||||||||||||||||||||  ||||||||| ||| |||| |||| ||| ||||||    
T  14163 gggtgtatatagaaatatttgatttttggggggtatttatagcaaagttcactgaaa 14219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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