View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5104_low_1 (Length: 956)
Name: NF5104_low_1
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5104_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 386 - 939
Target Start/End: Complemental strand, 3660274 - 3659709
Alignment:
| Q |
386 |
ttaggactgtgatacaatgattgtggatgggaaaaggtcgattagtagagatttggttcagtttttggactcaattgaagaggttgctgtgaaaaagcgt |
485 |
Q |
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| T |
3660274 |
ttaggactgtgatacaatgattgtggatgggaaaaggtcgattagtagagatttggttcagtttttggactcaattgaagaggttgctgcgaaaaagcgt |
3660175 |
T |
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| Q |
486 |
atgcattatgttaaagcggtaaagagttcgagatctggtcagaaagttcggagaccaagaaaaccagaaggtgatgatgatgagaagaagaagctgttga |
585 |
Q |
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| T |
3660174 |
atgcattatgttaaagcggtaaagagttcgagatctggtcagaaagttcagagaccaagaaaaccagaaggtgatgatgatgagaagaagaagctgttga |
3660075 |
T |
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| Q |
586 |
agaatttgagggggagagttgagaagattagcaaattgtgtaaggtttatggagatgatgaggaaggtttagagaatgaggagagcgttca--------- |
676 |
Q |
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| T |
3660074 |
agaatttgagggggagagttgagaagattagcaaattgtgtaaggtttatggagatgatgaggaaggtttagagaatgaggagagcgttcatgatgatga |
3659975 |
T |
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| Q |
677 |
---tgattatgatgacgatggagtaactgatgttgtggtcgctagaagggatgggaacaaaaatggtgtctttgttcaaaggcaagtaattcaacctaga |
773 |
Q |
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| T |
3659974 |
tgatgattatgatgacgatggagtaactgatgttgtggtcgctagaagggatgggaacaaaaatggtgtctttgttcaaaggcaagtaattcaacctaga |
3659875 |
T |
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| Q |
774 |
gtgaagaagagtgtgagatttgcagagaatggtaatgtttgtgaggtttatagcacaagaacttgtgaatcagatggaagttcctcaaatgatgaccaag |
873 |
Q |
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| T |
3659874 |
gtgaagaagagtgtgagatttgcagagaatggtaatgtttgtgaggtttatagcacaagaacttgtgaatcggatggaagttcctcaaatgatgaccaag |
3659775 |
T |
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| Q |
874 |
gcgaggttttggagaatagaaagtttgcagttgtagatgttgtggactcttatcagggtgttgaag |
939 |
Q |
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| T |
3659774 |
gcgaggttttggagaatagaaagtttgcagttgtagatgttgtggactcttctcagggtgttgaag |
3659709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 3647481 - 3647420
Alignment:
| Q |
18 |
agttccttgcttcaaaaagaaagcatacaaaactttgcatcaatatacaccaaacagaaagg |
79 |
Q |
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| T |
3647481 |
agttccttgcttcaaaaagaaatcttggaaaactttgcatgaatatacaccaaacagaaagg |
3647420 |
T |
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