View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5104_low_13 (Length: 251)
Name: NF5104_low_13
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5104_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 47964944 - 47965140
Alignment:
| Q |
16 |
atgtatccaaagttgcaaagtgaataataacttttgcaggagaaacagggaaatgtttaaaattattagatttttcgtgttaaagtttttactatttatg |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47964944 |
atgtatccaaagttgaaaagtgaataataacttttgcaggagaaacagggaaatgtttaaaattattagatttttcgtgttaaagtttttactatttatg |
47965043 |
T |
|
| Q |
116 |
tttctatttgttctaaatgtatatgcgttgttttaaattgaaattcaataaaaatatattactgtttgtcacacacatcaccacctttagaattgat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47965044 |
tttctatttgttctaaatgtatatgcgttgttttaaattgaaattcaataaaaatatattaatgtttgtcacacacatcaccacctttagaattgat |
47965140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University