View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5104_low_14 (Length: 247)

Name: NF5104_low_14
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5104_low_14
NF5104_low_14
[»] chr5 (21 HSPs)
chr5 (169-247)||(5578491-5578569)
chr5 (169-244)||(9409443-9409518)
chr5 (169-244)||(13490536-13490611)
chr5 (169-243)||(13382480-13382556)
chr5 (169-243)||(23962998-23963074)
chr5 (172-247)||(39537288-39537360)
chr5 (169-245)||(42879740-42879816)
chr5 (175-243)||(18889216-18889285)
chr5 (169-247)||(37135228-37135307)
chr5 (184-247)||(43170919-43170982)
chr5 (171-243)||(16039891-16039963)
chr5 (169-243)||(2677112-2677189)
chr5 (184-247)||(29789940-29790003)
chr5 (169-246)||(20891009-20891087)
chr5 (169-245)||(13820493-13820570)
chr5 (184-245)||(16686634-16686695)
chr5 (169-245)||(29150742-29150819)
chr5 (35-76)||(42879909-42879950)
chr5 (169-218)||(13825840-13825890)
chr5 (36-76)||(2677282-2677322)
chr5 (40-76)||(9409314-9409350)
[»] chr7 (20 HSPs)
chr7 (169-247)||(20394668-20394746)
chr7 (169-247)||(13754258-13754336)
chr7 (169-247)||(35477859-35477938)
chr7 (169-247)||(18667511-18667589)
chr7 (169-243)||(4540009-4540084)
chr7 (169-247)||(9420822-9420900)
chr7 (169-243)||(31072404-31072480)
chr7 (184-243)||(8389196-8389255)
chr7 (169-246)||(8113385-8113464)
chr7 (171-245)||(21864004-21864077)
chr7 (169-247)||(24441543-24441622)
chr7 (169-243)||(5771179-5771253)
chr7 (181-243)||(15995395-15995457)
chr7 (36-76)||(8113252-8113292)
chr7 (36-72)||(15678512-15678548)
chr7 (169-219)||(23305819-23305869)
chr7 (177-245)||(3123656-3123725)
chr7 (36-76)||(8389043-8389083)
chr7 (36-72)||(12383110-12383146)
chr7 (36-76)||(18667681-18667721)
[»] chr2 (29 HSPs)
chr2 (169-247)||(7444065-7444143)
chr2 (169-247)||(2554199-2554277)
chr2 (169-247)||(41825847-41825925)
chr2 (169-245)||(22575866-22575943)
chr2 (169-243)||(44322102-44322178)
chr2 (169-222)||(27861709-27861762)
chr2 (169-243)||(44313923-44313999)
chr2 (169-247)||(6883778-6883857)
chr2 (175-243)||(19685939-19686009)
chr2 (169-247)||(31548744-31548823)
chr2 (169-243)||(33015074-33015149)
chr2 (169-243)||(6221534-6221610)
chr2 (187-245)||(11198898-11198956)
chr2 (169-247)||(25621965-25622043)
chr2 (36-106)||(7444196-7444266)
chr2 (184-245)||(38565965-38566026)
chr2 (184-245)||(41302187-41302248)
chr2 (36-76)||(22575732-22575772)
chr2 (36-76)||(27861586-27861626)
chr2 (36-76)||(41302039-41302079)
chr2 (169-243)||(9913356-9913430)
chr2 (169-219)||(25471718-25471768)
chr2 (184-245)||(24484778-24484838)
chr2 (35-76)||(38565819-38565860)
chr2 (35-76)||(44313790-44313831)
chr2 (196-244)||(19090882-19090930)
chr2 (177-245)||(19678497-19678565)
chr2 (36-76)||(19686108-19686148)
chr2 (36-76)||(30387385-30387425)
[»] chr1 (30 HSPs)
chr1 (169-247)||(23663990-23664068)
chr1 (169-247)||(44310791-44310869)
chr1 (169-247)||(25095310-25095390)
chr1 (16-106)||(23663837-23663927)
chr1 (169-243)||(27430679-27430754)
chr1 (169-243)||(26465225-26465301)
chr1 (169-247)||(9023567-9023646)
chr1 (169-243)||(22070651-22070726)
chr1 (184-243)||(34307343-34307402)
chr1 (169-222)||(8737772-8737825)
chr1 (169-243)||(21906527-21906603)
chr1 (169-243)||(48596232-48596308)
chr1 (184-243)||(17967221-17967280)
chr1 (175-243)||(48999549-48999619)
chr1 (169-243)||(5049603-5049679)
chr1 (169-246)||(47396977-47397055)
chr1 (169-247)||(48646443-48646522)
chr1 (36-106)||(25095454-25095524)
chr1 (184-245)||(42055713-42055774)
chr1 (171-246)||(12783440-12783516)
chr1 (36-72)||(33048687-33048723)
chr1 (176-247)||(12028273-12028344)
chr1 (175-247)||(5208331-5208404)
chr1 (36-106)||(8737649-8737719)
chr1 (35-72)||(9371552-9371589)
chr1 (36-65)||(32175699-32175728)
chr1 (200-245)||(47559248-47559293)
chr1 (35-76)||(48999718-48999759)
chr1 (36-76)||(26465381-26465421)
chr1 (36-76)||(48596098-48596138)
[»] chr6 (23 HSPs)
chr6 (169-247)||(1423098-1423176)
chr6 (169-247)||(18675496-18675574)
chr6 (169-247)||(1131917-1131993)
chr6 (169-247)||(20990582-20990661)
chr6 (169-243)||(22011996-22012072)
chr6 (184-243)||(21442785-21442844)
chr6 (169-243)||(34043692-34043767)
chr6 (188-245)||(15060288-15060345)
chr6 (177-247)||(15603668-15603738)
chr6 (169-247)||(30358973-30359051)
chr6 (169-243)||(1603517-1603594)
chr6 (171-245)||(22525016-22525089)
chr6 (184-245)||(19108237-19108298)
chr6 (175-240)||(30359797-30359862)
chr6 (169-247)||(26817762-26817841)
chr6 (192-245)||(13758491-13758544)
chr6 (195-247)||(1213124-1213176)
chr6 (36-76)||(3228812-3228852)
chr6 (35-76)||(22011863-22011904)
chr6 (36-76)||(1423270-1423310)
chr6 (36-76)||(1603687-1603727)
chr6 (169-245)||(3228946-3229021)
chr6 (36-76)||(20990755-20990795)
[»] chr4 (25 HSPs)
chr4 (169-245)||(6261491-6261567)
chr4 (169-245)||(36213877-36213953)
chr4 (171-245)||(39480136-39480210)
chr4 (169-243)||(7413624-7413700)
chr4 (169-243)||(7459705-7459781)
chr4 (169-243)||(28803774-28803850)
chr4 (169-245)||(3665030-3665107)
chr4 (169-243)||(10094902-10094978)
chr4 (184-245)||(31915613-31915674)
chr4 (169-245)||(1842885-1842961)
chr4 (169-247)||(13957765-13957842)
chr4 (169-244)||(10142663-10142738)
chr4 (169-215)||(23935775-23935822)
chr4 (36-73)||(10142834-10142871)
chr4 (184-245)||(24610987-24611047)
chr4 (171-219)||(51759017-51759066)
chr4 (188-246)||(9921598-9921656)
chr4 (177-243)||(20151797-20151863)
chr4 (169-245)||(52460686-52460764)
chr4 (35-76)||(10094767-10094808)
chr4 (35-72)||(49243598-49243635)
chr4 (36-72)||(14032326-14032362)
chr4 (172-247)||(21320344-21320419)
chr4 (36-76)||(23935643-23935683)
chr4 (36-76)||(28803654-28803694)
[»] chr8 (20 HSPs)
chr8 (169-247)||(16729873-16729950)
chr8 (169-245)||(7972864-7972940)
chr8 (169-247)||(7263514-7263593)
chr8 (169-243)||(31597670-31597746)
chr8 (169-243)||(45117614-45117690)
chr8 (169-243)||(3762844-3762919)
chr8 (171-222)||(40971595-40971646)
chr8 (169-243)||(1981744-1981820)
chr8 (174-243)||(39906390-39906458)
chr8 (169-246)||(602012-602090)
chr8 (169-245)||(11647994-11648071)
chr8 (169-247)||(9381721-9381801)
chr8 (169-236)||(35824271-35824339)
chr8 (184-242)||(24190087-24190145)
chr8 (194-244)||(28374282-28374332)
chr8 (188-245)||(9137834-9137891)
chr8 (36-76)||(1981900-1981940)
chr8 (36-76)||(7972731-7972771)
chr8 (36-76)||(16730045-16730085)
chr8 (36-76)||(45117771-45117811)
[»] chr3 (21 HSPs)
chr3 (169-247)||(52448286-52448364)
chr3 (169-243)||(10994030-10994105)
chr3 (169-245)||(3917585-3917662)
chr3 (169-243)||(15761007-15761082)
chr3 (169-243)||(25071791-25071866)
chr3 (184-243)||(53076865-53076924)
chr3 (169-243)||(27941396-27941472)
chr3 (169-243)||(19157241-19157317)
chr3 (169-247)||(47185493-47185572)
chr3 (184-242)||(10992823-10992881)
chr3 (194-244)||(33100338-33100388)
chr3 (188-245)||(12893446-12893503)
chr3 (169-245)||(44663059-44663134)
chr3 (169-219)||(9467123-9467173)
chr3 (169-246)||(44879963-44880041)
chr3 (36-76)||(1418207-1418247)
chr3 (36-76)||(10993910-10993950)
chr3 (36-76)||(25071957-25071997)
chr3 (36-76)||(27941264-27941304)
chr3 (36-72)||(36641844-36641880)
chr3 (36-76)||(40145791-40145831)
[»] scaffold0385 (1 HSPs)
scaffold0385 (169-247)||(1111-1189)
[»] scaffold0137 (1 HSPs)
scaffold0137 (169-237)||(21061-21130)
[»] scaffold0116 (1 HSPs)
scaffold0116 (169-247)||(41115-41191)
[»] scaffold0093 (1 HSPs)
scaffold0093 (169-227)||(51011-51071)
[»] scaffold0229 (1 HSPs)
scaffold0229 (195-247)||(14287-14339)
[»] scaffold1266 (1 HSPs)
scaffold1266 (171-245)||(1718-1793)
[»] scaffold0311 (1 HSPs)
scaffold0311 (35-72)||(4569-4606)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 5578491 - 5578569
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5578491 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 5578569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 9409443 - 9409518
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaat 244  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  9409443 actaccaaataaatgttttttagataacatctgaaaataaattaaatactctatatacacaaaaacaaaataaaat 9409518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 13490611 - 13490536
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaat 244  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13490611 actacaaaataaaggttttttagacaacatctgaaaataaattaaatactctatatacaccaaaacaaaataaaat 13490536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 13382480 - 13382556
Alignment:
Q  169 actaccaaataaatgtttt--ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  13382480 actacaaaataaatgttttttttagacaacatctgaaaataaattaaatattctatatacaccaaaacaaaataaaa 13382556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 23963074 - 23962998
Alignment:
Q  169 actaccaaataaatgtttttt--agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  23963074 actacaaaataaatgttttttttagacaacatctgaaaataaattaaatattctatatacaccaaaacaaaataaaa 23962998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 39537288 - 39537360
Alignment:
Q  172 accaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||||||||   ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  39537288 accaaataaatgtttttta---aacatctgaaaataaattaaatattctatatacaccaaaacaaaataaaatatc 39537360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 42879816 - 42879740
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  42879816 actaccaaataaatgtttttttagataacat-tgaaaataaattaaatactctatatacaccaaaacaaaataaaata 42879740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 18889285 - 18889216
Alignment:
Q  175 aaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  18889285 aaataaatgtttttttagacaacatctgaaaataaattaaatattttatatacaccaaaacaaaataaaa 18889216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 37135307 - 37135228
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    ||||||||||||||||||||| || |||| ||||||||||||| |||||||| ||  |||||||||||| ||||||||||    
T  37135307 actaccaaataaatgtttttttaggcaacgtctgaaaataaatcaaatactccatagacaccaaaacaacataaaatatc 37135228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 43170919 - 43170982
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||| |||||||||||||||||| ||||||||| |  |||||||||||||||||||||||    
T  43170919 ttttttaggcaacatctgaaaataaatcaaatactctttagacaccaaaacaaaataaaatatc 43170982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 16039891 - 16039963
Alignment:
Q  171 taccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    |||| |||||||  |||||||| ||||||| ||||||||| |||||||||||  |||||||||||||||||||    
T  16039891 tacctaataaattgtttttagataacatctaaaaataaatcaaatactctatagacaccaaaacaaaataaaa 16039963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 2677189 - 2677112
Alignment:
Q  169 actaccaaataaatgtt---ttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||   ||||||||||||||||||||||||||||||| | |||  |||||||| ||||||||||    
T  2677189 actacaaaataaatgtttttttttagacaacatctgaaaataaattaaatattttatacacaccaaaccaaaataaaa 2677112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 29790003 - 29789940
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||| |||||||||||||||||| ||||| |||||  | |||||||||||||||||||||    
T  29790003 ttttttaggcaacatctgaaaataaatcaaatattctatagataccaaaacaaaataaaatatc 29789940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 20891009 - 20891087
Alignment:
Q  169 actaccaaataaatg-ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatat 246  Q
    ||||||||||||||  ||||||||| || || ||||||||||| ||||||||||   ||||||||||||||||||||||    
T  20891009 actaccaaataaataattttttagaaaagatatgaaaataaatcaaatactctacacacaccaaaacaaaataaaatat 20891087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 13820493 - 13820570
Alignment:
Q  169 actaccaaataaatgtttt-ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||||||||| |||| |||||||||||||||||| |||| ||||||   ||  |||||||||||||||||||||    
T  13820493 actaccaaataaatatttttttagacaacatctgaaaacaaatcaaatacctcatagacaccaaaacaaaataaaata 13820570  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 16686634 - 16686695
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||| |||||||||||||||||| | |||||  ||  |||||||||||||||||||||    
T  16686634 ttttttaggcaacatctgaaaataaatcagatacttcatagacaccaaaacaaaataaaata 16686695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 29150819 - 29150742
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||| |||||||||||| || |||||||| ||||||||| |||||||  ||  | |||||||||||||||||||    
T  29150819 actaccaactaaatgtttttttagccaacatctaaaaataaatcaaatacttcatagataccaaaacaaaataaaata 29150742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 42879950 - 42879909
Alignment:
Q  35 gcagggccgttcctagagttttacgggtcttagccataatat 76  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  42879950 gcagggccgttcctagagttttacgggccttaggcataatat 42879909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 13825840 - 13825890
Alignment:
Q  169 actaccaaataaatgtttt-ttagacaacatctgaaaataaattaaatact 218  Q
    |||||||||||||| |||| ||||||||||||| ||||||||| |||||||    
T  13825840 actaccaaataaatatttttttagacaacatctaaaaataaatcaaatact 13825890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 2677322 - 2677282
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||| ||||||||||||||||||||| ||||| ||||||||    
T  2677322 caggcccgttcctagagttttacgggccttaggcataatat 2677282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 9409314 - 9409350
Alignment:
Q  40 gccgttcctagagttttacgggtcttagccataatat 76  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  9409314 gccgttcctagagttttatgggtcttaggcataatat 9409350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 20394668 - 20394746
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20394668 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactttatgtacaccaaaacaaaataaaatatc 20394746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 13754336 - 13754258
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |||||||    
T  13754336 actaccaaataaatgttttttagataacatctaaaaataaattaaatactctatatacaccaaaacaaaatgaaatatc 13754258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 35477859 - 35477938
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||||||| |||||||    
T  35477859 actaccaaataaatgtttttttagataacatctgaaaataaattaaatactatatatacaccaaaacaaaatgaaatatc 35477938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 18667589 - 18667511
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  18667589 actaccaaataaatattttttagataccatctgaaaataaattaaatactctatatacatcaaaacaaaatgaaatatc 18667511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 4540084 - 4540009
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  4540084 actacaaaataaatgtttttttagacaacatctgaaaataaattaaatattttatatacaccaaaacaaaataaaa 4540009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 9420900 - 9420822
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||| |||||||||||||||||  |||||||||||||||||||||||||||| |  ||||||| ||| |||||||||||    
T  9420900 actatcaaataaatgttttttaagcaacatctgaaaataaattaaatactctgttgacaccaacacataataaaatatc 9420822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 31072404 - 31072480
Alignment:
Q  169 actaccaaataaatgtttttt--agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||||  | ||||||||||||||||||||||||| ||||| |||||| |||||||||||||    
T  31072404 actacaaaataaatgttttttttaaacaacatctgaaaataaattaaatattctatatacaccgaaacaaaataaaa 31072480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 8389196 - 8389255
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||||||||||||||||||||||||||||||| | |||  |||||||||||||||||||    
T  8389196 ttttttagacaacatctgaaaataaattaaatattttatacacaccaaaacaaaataaaa 8389255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 8113385 - 8113464
Alignment:
Q  169 actaccaaataaatgtttttta---gacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatat 246  Q
    |||||||||||||||||||||    | ||||||||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  8113385 actaccaaataaatgttttttttttggcaacatctgaaaataaattaa-tactctatagacaccaaaacaaaataaaatat 8113464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 21864077 - 21864004
Alignment:
Q  171 taccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||||||| |||||||| |||||||| |||||||||||||||||| ||  ||| |||||||||||||||||    
T  21864077 taccaaataaat-ttttttaggcaacatctcaaaataaattaaatactccataaacaacaaaacaaaataaaata 21864004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 24441543 - 24441622
Alignment:
Q  169 actaccaaataaatgttttt-tagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||||||||| |||||||||| ||||||||||| |||||||  ||  | ||||||| | |||||||||||    
T  24441543 actaccaaataaatgtttttctagacaacatttgaaaataaatcaaatacttcatagaaaccaaaatagaataaaatatc 24441622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 5771253 - 5771179
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    |||||||||||| | |||||||| |||||||||||||||||  ||||| | |||  |||||||||||||| ||||    
T  5771253 actaccaaataatttttttttaggcaacatctgaaaataaaccaaatattttatagacaccaaaacaaaacaaaa 5771179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 15995457 - 15995395
Alignment:
Q  181 atgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||||||||| |||||||| ||||||||| |||||||| ||  | |||||||||||||||||    
T  15995457 atgttttttaggcaacatcttaaaataaatcaaatactcaatagaaaccaaaacaaaataaaa 15995395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 8113252 - 8113292
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||||||||||||||||||||| ||||||||| ||||||||    
T  8113252 cagggccgttcctagagttttaggggtcttagacataatat 8113292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 15678512 - 15678548
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccata 72  Q
    |||||||||||||||||||||||||||||||| ||||    
T  15678512 cagggccgttcctagagttttacgggtcttaggcata 15678548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 23305869 - 23305819
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactc 219  Q
    |||||||||||||||||||||||  ||||||| |||| |||| ||||||||    
T  23305869 actaccaaataaatgttttttaggaaacatcttaaaagaaatcaaatactc 23305819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 3123656 - 3123725
Alignment:
Q  177 ataaatgttt-tttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||||| ||||| ||| |||| | ||||| | |||||||||||  |||||||||||||||||||||    
T  3123656 ataaatgtttctttaggcaatatctaacaataattcaaatactctatagacaccaaaacaaaataaaata 3123725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 8389043 - 8389083
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||| ||||||||||||||||||||| ||||| ||||||||    
T  8389043 caggcccgttcctagagttttacgggccttaggcataatat 8389083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 12383146 - 12383110
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccata 72  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  12383146 cagggccgttcctagagttttacgggccttaggcata 12383110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 18667721 - 18667681
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    ||||||||||||||| |||||||||| ||||| ||||||||    
T  18667721 cagggccgttcctagtgttttacgggccttaggcataatat 18667681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 7444143 - 7444065
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7444143 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatatacaccaaaacaaaataaaatatc 7444065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 2554277 - 2554199
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||    
T  2554277 actaccaaataaatgttttttagacaacatctgaaaataaattaaatattctatatacaccaaaacaaaatgaaatatc 2554199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 41825847 - 41825925
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||    
T  41825847 actaccaaataaatgttttttagacaacatctgaaaataaattaaatattctatatacaccaaaacaaaatgaaatatc 41825925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 22575866 - 22575943
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||| |||||||||||||||||    
T  22575866 actaccaaataaatgtttttttagataacatatgaaaataaattaaatactctatatacaacaaaacaaaataaaata 22575943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 44322102 - 44322178
Alignment:
Q  169 actaccaaataaatgtttt--ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  44322102 actacaaaataaatgttttttttagacaacatctgaaaataaattaaatattctatatacaccaaaacaaaataaaa 44322178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 27861709 - 27861762
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctat 222  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27861709 actaccaaataaatattttttagacaacatctgaaaataaattaaatactctat 27861762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 44313923 - 44313999
Alignment:
Q  169 actaccaaataaatgtttt--ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  44313923 actacaaaataaatgttttttttagacaacatctgaaaataaattaaatattatatatacaccaaaacaaaataaaa 44313999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 6883857 - 6883778
Alignment:
Q  169 actaccaaataaatgtt-ttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    ||||||||||||||||| |||||| |||||||||||||||||| |||||||| ||  ||||||||||||||||| |||||    
T  6883857 actaccaaataaatgttcttttaggcaacatctgaaaataaatcaaatactccatagacaccaaaacaaaataagatatc 6883778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 19686009 - 19685939
Alignment:
Q  175 aaataaatgtttttt--agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    |||||||||||||||  ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||    
T  19686009 aaataaatgtttttttaagacaacatttgaaaataaattaaatattctatatacaccaaaacaaaataaaa 19685939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 31548744 - 31548823
Alignment:
Q  169 actaccaaataaatgt-tttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||||| ||||||| |||||| ||||||||||| ||||||| |||  |||||||||||||||||||||||    
T  31548744 actaccaaataaatgtatttttaggcaacatatgaaaataaatcaaatactttataaacaccaaaacaaaataaaatatc 31548823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 33015074 - 33015149
Alignment:
Q  169 actaccaaataaatgtttt-ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||| | |||  |||||||||||||||||||    
T  33015074 actacaaaataaatgtttttttagacaacatctgaaaataaattaaatattttatacacaccaaaacaaaataaaa 33015149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 6221610 - 6221534
Alignment:
Q  169 actaccaaataaatgtttttt--agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||||||| | |||  |||||||||||||||||||    
T  6221610 actacaaaataaatgttttttttagacaacatctgaaaataaattaaatattttatacacaccaaaacaaaataaaa 6221534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 11198898 - 11198956
Alignment:
Q  187 tttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||||  |||||||||||    
T  11198898 tttagacaacatctaaaaataaatcaaatactctatatacaccaaagtaaaataaaata 11198956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 25622043 - 25621965
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    ||||| ||||||||||||||||| |||||| | ||||||||| | |||||  ||  |||||||||||||||||||||||    
T  25622043 actacaaaataaatgttttttaggcaacatataaaaataaatcagatacttcataaacaccaaaacaaaataaaatatc 25621965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 7444266 - 7444196
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatatnnnnnnnggtccctaacataatacatcata 106  Q
    |||||||||||||||||||||||||||||||| ||||||||       || |||| |||||||||||||||    
T  7444266 cagggccgttcctagagttttacgggtcttaggcataatatgaaaaaagggcccttacataatacatcata 7444196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 38565965 - 38566026
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||| |||||||||||||||||| ||||||| |||  |||||||||||||| ||||||    
T  38565965 ttttttaggcaacatctgaaaataaatcaaatactttatagacaccaaaacaaaacaaaata 38566026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 41302187 - 41302248
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||| |||||||||||||||||| ||| ||| |||  ||||||||||||| |||||||    
T  41302187 ttttttaggcaacatctgaaaataaatcaaaaactttatagacaccaaaacaaattaaaata 41302248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 22575732 - 22575772
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||||||||||||||||||||||||| ||||| ||||||||    
T  22575732 cagggccgttcctagagttttacgggccttaggcataatat 22575772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 27861586 - 27861626
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||||||||||||||||||||||||| ||||| ||||||||    
T  27861586 cagggccgttcctagagttttacgggccttaggcataatat 27861626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 41302039 - 41302079
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||||||||||||||||||||||||| ||||| ||||||||    
T  41302039 cagggccgttcctagagttttacgggccttaggcataatat 41302079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 9913430 - 9913356
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    |||||||||||||| |||||||| | |||||  ||||||||| |||||||| ||  | | |||||||||||||||    
T  9913430 actaccaaataaatattttttaggctacatcctaaaataaatcaaatactcaattgaaagcaaaacaaaataaaa 9913356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 25471718 - 25471768
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactc 219  Q
    ||||||| ||||||||||||||| |||||||| ||||||||| | ||||||    
T  25471718 actaccagataaatgttttttaggcaacatcttaaaataaatcagatactc 25471768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 24484838 - 24484778
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||| ||| |||||||| ||||| ||||||| |||  |||||||||||||||||||||    
T  24484838 ttttttaggcaatatctgaaa-taaatcaaatactttatagacaccaaaacaaaataaaata 24484778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 38565819 - 38565860
Alignment:
Q  35 gcagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||||| | |||||||||||||||||||||||| ||||||||    
T  38565819 gcagggtcattcctagagttttacgggtcttaggcataatat 38565860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 44313790 - 44313831
Alignment:
Q  35 gcagggccgttcctagagttttacgggtcttagccataatat 76  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||    
T  44313790 gcaggcccgttcctagagttttacgggccttagacataatat 44313831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 19090882 - 19090930
Alignment:
Q  196 catctgaaaataaattaaatactctatgtacaccaaaacaaaataaaat 244  Q
    ||||||||||||||| ||||||| |||  ||||| ||||||||||||||    
T  19090882 catctgaaaataaatcaaatactttatagacaccgaaacaaaataaaat 19090930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 19678565 - 19678497
Alignment:
Q  177 ataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    ||||| ||||||||||||||||||  |||||||| |||||||| ||  | |||||||| ||| ||||||    
T  19678565 ataaaagttttttagacaacatcttcaaataaatcaaatactccatagaaaccaaaactaaacaaaata 19678497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 19686148 - 19686108
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||| ||||||||||||||||||||| ||||| ||||||||    
T  19686148 caggcccgttcctagagttttacgggccttaggcataatat 19686108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 30387425 - 30387385
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    ||||| ||||||||||||||| |||||||||| ||||||||    
T  30387425 cagggtcgttcctagagtttttcgggtcttaggcataatat 30387385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 23663990 - 23664068
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23663990 actaccaaataaatattttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 23664068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 44310869 - 44310791
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  44310869 actaccaaataaatgttttttagacaacatctgaaaataaatcaaatactctatacacaccaaaacaaaataaaatatc 44310791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 25095390 - 25095310
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaata--ctctatgtacaccaaaacaaaataaaatatc 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  25095390 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctctatgttcaccaaaacaaaataaaatatc 25095310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 23663837 - 23663927
Alignment:
Q  16 ctaaaatcaaacaatgtacgcagggccgttcctagagttttacgggtcttagccataatatnnnnnnnggtccctaacataatacatcata 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||       |||||| ||||||||||||||||    
T  23663837 ctaaaatcaaacaatgtacgcagggccgttcctagagttttacgggccttaggcataatatgaaaaaaggtccccaacataatacatcata 23663927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 27430679 - 27430754
Alignment:
Q  169 actaccaaataaatgttttt-tagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  27430679 actacaaaataaatgtttttatagacaacatctgaaaataaattaaatattctatatacaccaaaacaaaataaaa 27430754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 26465301 - 26465225
Alignment:
Q  169 actaccaaataaatgtttttt--agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  26465301 actacaaaataaatgttttttttagacaacatctgaaaataaattaaatattctatatacaccaaaacaaaataaaa 26465225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 9023646 - 9023567
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||| |||||| | |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||    
T  9023646 actaccaaataaatatttttttatacaacatctgaatataaattaaatactctatagacaccaaaacaaaataaaatatc 9023567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 22070726 - 22070651
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  22070726 actacaaaataaatgtttttttagacaacatctgaaaataaattaaatattttatatacaccaaaacaaaataaaa 22070651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 34307343 - 34307402
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  34307343 ttttttagacaacatctgaaaataaattaaatattctatatacaccaaaacaaaataaaa 34307402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 8737772 - 8737825
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctat 222  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8737772 actaccaaataaatgttttttagacaacttctgaaaataaattaaatactctat 8737825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 21906603 - 21906527
Alignment:
Q  169 actaccaaataaatgtttttt--agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||||  |||||||||||||||||||||||||||  |||| ||||||||||||||||||||    
T  21906603 actacaaaataaatgttttttttagacaacatctgaaaataaattaaatatcctatatacaccaaaacaaaataaaa 21906527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 48596232 - 48596308
Alignment:
Q  169 actaccaaataaatgtttt--ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||||||| |||||  |||||||||||||||||||    
T  48596232 actacaaaataaatgttttttttagacaacatctgaaaataaattaaatattctatacacaccaaaacaaaataaaa 48596308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 17967221 - 17967280
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||    
T  17967221 ttttttagacaacatctgaaaataaattaaatattctatatacatcaaaacaaaataaaa 17967280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 48999619 - 48999549
Alignment:
Q  175 aaataaatgtttttt--agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    |||||||||||||||  ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||    
T  48999619 aaataaatgtttttttaagacaacatttgaaaataaattaaatattctatatacaccaaaacaaaataaaa 48999549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 5049679 - 5049603
Alignment:
Q  169 actaccaaataaatgtttttt--agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||||  ||||||||||| ||||||||||||||| ||||| |||||||||| |||||||||    
T  5049679 actacaaaataaatgttttttttagacaacatctaaaaataaattaaatattctatatacaccaaaataaaataaaa 5049603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 47396977 - 47397055
Alignment:
Q  169 actaccaaataaatgtt-ttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatat 246  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||| |||||||| || | || ||||||||||||||||||    
T  47396977 actactaaataaatgttattttagacaacatatgaaaataaatcaaatactcaatattcatcaaaacaaaataaaatat 47397055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 48646522 - 48646443
Alignment:
Q  169 actaccaaataaatgtt-ttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||| ||| |||||||| |||||  |||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||    
T  48646522 actatcaagtaaatgttgttttaagcaacatctgaaaataaatcaaataatctatatacaccaacacaaaataaaatatc 48646443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 25095524 - 25095454
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatatnnnnnnnggtccctaacataatacatcata 106  Q
    ||||| |||||||||||||||||||| ||||| ||||||||       |||||||||||||||||||||||    
T  25095524 cagggtcgttcctagagttttacgggccttaggcataatatgaaagaaggtccctaacataatacatcata 25095454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 42055713 - 42055774
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||| |||||| ||||||||||| ||||||| |||  |||||||||||||||||||||    
T  42055713 ttttttaggcaacatatgaaaataaatcaaatactttatagacaccaaaacaaaataaaata 42055774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 12783440 - 12783516
Alignment:
Q  171 taccaaataaatgtttt-ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatat 246  Q
    |||||||| |||||||| ||||||||||||| ||||||||| |||||||  ||  |||||||||||| |||||||||    
T  12783440 taccaaattaatgtttttttagacaacatcttaaaataaatcaaatacttcataaacaccaaaacaatataaaatat 12783516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 33048687 - 33048723
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccata 72  Q
    |||||||||||||||||||||||||||||||| ||||    
T  33048687 cagggccgttcctagagttttacgggtcttaggcata 33048723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 12028344 - 12028273
Alignment:
Q  176 aataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    ||||||||||||||||  |||||||||||| |||| ||||| |  ||  |||| ||||||||||||||||||    
T  12028344 aataaatgttttttaggtaacatctgaaaacaaatcaaatatttcatagacacaaaaacaaaataaaatatc 12028273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 5208331 - 5208404
Alignment:
Q  175 aaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    ||||||||||||||| |  |||||||| ||| ||||| |||||||| ||  ||||||||| |||||||||||||    
T  5208331 aaataaatgtttttttatgcaacatctaaaagtaaatcaaatactccataaacaccaaaataaaataaaatatc 5208404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 8737649 - 8737719
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatatnnnnnnnggtccctaacataatacatcata 106  Q
    |||||||||| ||||||||||||||| ||||| ||||||||       || |||| |||||||||||||||    
T  8737649 cagggccgtttctagagttttacgggccttaggcataatatgaaaaaagggcccttacataatacatcata 8737719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 9371552 - 9371589
Alignment:
Q  35 gcagggccgttcctagagttttacgggtcttagccata 72  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  9371552 gcagggccgttcctaaagttttacgggtcttaggcata 9371589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 32175699 - 32175728
Alignment:
Q  36 cagggccgttcctagagttttacgggtctt 65  Q
    ||||||||||||||||||||||||||||||    
T  32175699 cagggccgttcctagagttttacgggtctt 32175728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 47559248 - 47559293
Alignment:
Q  200 tgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    ||||||||||| |||||||||||  ||||||||| |||||||||||    
T  47559248 tgaaaataaatcaaatactctataaacaccaaaataaaataaaata 47559293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 48999759 - 48999718
Alignment:
Q  35 gcagggccgttcctagagttttacgggtcttagccataatat 76  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||    
T  48999759 gcaggcccgttcctagagttttacgggccttaggcataatat 48999718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 26465421 - 26465381
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||| ||||||||||||||||||||| ||||| ||||||||    
T  26465421 caggcccgttcctagagttttacgggccttaggcataatat 26465381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 48596098 - 48596138
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||| ||| ||||||||||||||||||||||| ||||||||    
T  48596098 caggcccggtcctagagttttacgggtcttaggcataatat 48596138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 1423176 - 1423098
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1423176 actaccaaataaatattttttagacaacatctgaaaataaattaaatactctatatacaccaaaacaaaataaaatatc 1423098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 18675574 - 18675496
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18675574 actaccaaataaatagtttttagacaacatctgaaaataaattaaatactctatatacaccaaaacaaaataaaatatc 18675496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 1131993 - 1131917
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  1131993 actaccaaataaatgttttttagacaacatctaaaaataaattaaatactcta--tacaccaaaacaaaataaaatatc 1131917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 20990661 - 20990582
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  20990661 actaccaaataaatgtttttttagataacatctgaaaataaattaaatactctatatacaccaaaacaaaatgaaatatc 20990582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 22011996 - 22012072
Alignment:
Q  169 actaccaaataaatgtttt--ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  22011996 actacaaaataaatgttttttttagacaacatctgaaaataaattaaatattctatatacaccaaaacaaaataaaa 22012072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 21442844 - 21442785
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  21442844 ttttttagacaacatctgaaaataaattaaatattttatatacaccaaaacaaaataaaa 21442785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 34043767 - 34043692
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||| | |||  |||||||||||||||||||    
T  34043767 actacaaaataaatgtttttttagacaacatctgaaaataaattaaatattttatacacaccaaaacaaaataaaa 34043692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 15060345 - 15060288
Alignment:
Q  188 ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    ||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||    
T  15060345 ttagacaacatctgaaaataaatcaaatactctatagacaccaaaacaaaataaaata 15060288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 15603668 - 15603738
Alignment:
Q  177 ataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||||||||||||||||||||||| |||||||  ||  |||  ||||||||||||||||||    
T  15603668 ataaatgttttttagacaacatctgaaaataaatcaaatacttcataaacattaaaacaaaataaaatatc 15603738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 30359051 - 30358973
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    ||||| |||||||| |||||||| |||||||||||||||||| |||||||| ||  |||| ||||||||||| ||||||    
T  30359051 actacaaaataaatattttttaggcaacatctgaaaataaatcaaatactccatagacactaaaacaaaatataatatc 30358973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 1603594 - 1603517
Alignment:
Q  169 actaccaaataaatgtt---ttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||   ||||||||||||||||||||||||||||||| | |||  |||||||| ||||||||||    
T  1603594 actacaaaataaatgtttttttttagacaacatctgaaaataaattaaatattttatacacaccaaaccaaaataaaa 1603517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 22525089 - 22525016
Alignment:
Q  171 taccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||||| | |||||||| |||||||||||||||||| ||||||| |||  ||| |||||||||||||||||    
T  22525089 taccaaataatt-ttttttaggcaacatctgaaaataaatcaaatactttatagacatcaaaacaaaataaaata 22525016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 19108298 - 19108237
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    ||||||||||||||||| ||||||||| ||||| | |||  |||||||||||||||||||||    
T  19108298 ttttttagacaacatctaaaaataaatcaaataatttatagacaccaaaacaaaataaaata 19108237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 30359862 - 30359797
Alignment:
Q  175 aaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaata 240  Q
    |||||||| |||||||| |||||||||||||||||| |||||||| ||  |||| |||||||||||    
T  30359862 aaataaatattttttaggcaacatctgaaaataaataaaatactccatagacactaaaacaaaata 30359797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 26817841 - 26817762
Alignment:
Q  169 actaccaaataaatg-ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||| |||||||||| |||||||||| |||||| ||||||||| ||||||| |||  ||||  |||||||||||||||||    
T  26817841 actatcaaataaatggttttttagacgacatctaaaaataaatcaaatactgtatagacactcaaacaaaataaaatatc 26817762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 13758491 - 13758544
Alignment:
Q  192 acaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    ||||||| ||||||||||| |||||||||||  ||||||||||| |||||||||    
T  13758491 acaacatatgaaaataaatcaaatactctatagacaccaaaacagaataaaata 13758544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 1213176 - 1213124
Alignment:
Q  195 acatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||||||||||| || ||  ||| |||||||||||||||||||    
T  1213176 acatctgaaaataaattaaatattccatagacatcaaaacaaaataaaatatc 1213124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 3228812 - 3228852
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  3228812 cagggccgttcctagagttttacgggtcttagatataatat 3228852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 22011863 - 22011904
Alignment:
Q  35 gcagggccgttcctagagttttacgggtcttagccataatat 76  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||    
T  22011863 gcaggcccgttcctagagttttacgggccttagacataatat 22011904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 1423310 - 1423270
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||||||||||||||||||||||| | ||||| ||||||||    
T  1423310 cagggccgttcctagagttttacgagccttaggcataatat 1423270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 1603727 - 1603687
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||| ||||||||||||||||||||| ||||| ||||||||    
T  1603727 caggcccgttcctagagttttacgggccttaggcataatat 1603687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 3228946 - 3229021
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||||||| | |||||| | |||||| ||||||||||| ||||||  |||  | |||||||||||||||||||    
T  3228946 actaccaaataattttttttt-gccaacatttgaaaataaatcaaatacattataaataccaaaacaaaataaaata 3229021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 20990795 - 20990755
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    ||||||||||||||| |||||||||| ||||| ||||||||    
T  20990795 cagggccgttcctagcgttttacgggccttaggcataatat 20990755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 6261491 - 6261567
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6261491 actaccaaataaatgttttttagataacatctgaaaataaattaaatactctatatacaccaaaacaaaataaaata 6261567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 36213953 - 36213877
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  36213953 actaccaaataaatgttttttagataacatctgaaaataaattaaatactctataaacaccaaaacaaaataaaata 36213877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 39480136 - 39480210
Alignment:
Q  171 taccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  39480136 taccaaataaatgttttttagataacatctgaaaataaattaaatactctatatacacaaaaacaaaataaaata 39480210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 7413624 - 7413700
Alignment:
Q  169 actaccaaataaatgtt--ttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  7413624 actacaaaataaatgttatttttagacaacatctgaaaataaattaaatattctatatacaccaaaacaaaataaaa 7413700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 7459705 - 7459781
Alignment:
Q  169 actaccaaataaatgtt--ttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  7459705 actacaaaataaatgttatttttagacaacatctgaaaataaattaaatattctatatacaccaaaacaaaataaaa 7459781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 28803774 - 28803850
Alignment:
Q  169 actaccaaataaatgtttt--ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  28803774 actacaaaataaatgttttttttagacaacatctgaaaataaattaaatattctatatacaccaaaacaaaataaaa 28803850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 3665030 - 3665107
Alignment:
Q  169 actaccaaataaatgtttt-ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||  |||||||||||||||||||||    
T  3665030 actaccatataaatgtttttttagacaacatctgaaaataaatcaaatactatatagacaccaaaacaaaataaaata 3665107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 10094902 - 10094978
Alignment:
Q  169 actaccaaataaatgtttt--ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||||||| |||||  |||||||||||||||||||    
T  10094902 actacaaaataaatgttttttttagacaacatctgaaaataaattaaatattctatacacaccaaaacaaaataaaa 10094978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 31915674 - 31915613
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    ||||||||||||||||||||||||||| |||||| ||||  |||||||||||||||||||||    
T  31915674 ttttttagacaacatctgaaaataaatcaaatacactataaacaccaaaacaaaataaaata 31915613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 1842885 - 1842961
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||||||||| |||| ||| || ||||| ||||||||| ||||||| |||  |||||||||||||||||||||    
T  1842885 actaccaaataaatattttataggcatcatctaaaaataaatcaaatactttatagacaccaaaacaaaataaaata 1842961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 13957842 - 13957765
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||| |||||||||| || |||||| ||||||||||| ||||||||||   | |||||||||||||||||||||    
T  13957842 actaccaaattaatgtttttttaggcaacatatgaaaataaatcaaatactcta--aagaccaaaacaaaataaaatatc 13957765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 10142738 - 10142663
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaat 244  Q
    |||||||||||||| |||| |||  ||||| ||||||||||| |||||||  ||  ||||||||||||||||||||    
T  10142738 actaccaaataaatattttatagggaacatttgaaaataaatcaaatactgcatagacaccaaaacaaaataaaat 10142663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 23935775 - 23935822
Alignment:
Q  169 actaccaaataaatgttttt-tagacaacatctgaaaataaattaaat 215  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  23935775 actaccaaataaatgtttttctagacaacatctgaaaataaatcaaat 23935822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 10142871 - 10142834
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataa 73  Q
    |||||||||||||||||||||| |||||||||||||||    
T  10142871 cagggccgttcctagagttttaggggtcttagccataa 10142834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 24610987 - 24611047
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||||||| |||||||||||||| ||||| |||||  | |||||||||||||||||||    
T  24610987 ttttttagacaatatctgaaaataaatcaaatattctat-aaaaccaaaacaaaataaaata 24611047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 51759066 - 51759017
Alignment:
Q  171 taccaaataaatgtttttt-agacaacatctgaaaataaattaaatactc 219  Q
    |||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  51759066 taccaaataaatatttttttagacaacatctgaaaataaatcaaatactc 51759017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 9921598 - 9921656
Alignment:
Q  188 ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatat 246  Q
    |||| |||||||||||||||||| |||||||  ||  ||||||||| ||||||||||||    
T  9921598 ttaggcaacatctgaaaataaatcaaatacttgatagacaccaaaataaaataaaatat 9921656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 20151797 - 20151863
Alignment:
Q  177 ataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||||||||||||| |||||| | ||||||||| |||||||  ||  | |||||||||||||||||    
T  20151797 ataaatgttttttaggcaacattttaaaataaataaaatacttaatagaaaccaaaacaaaataaaa 20151863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 52460764 - 52460686
Alignment:
Q  169 actaccaaataaatgtt-ttttagacaacatctg-aaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    ||||||||||| ||||| |||||||||||||||| ||||||||| ||||||  | |  ||||| |||||||||||||||    
T  52460764 actaccaaatatatgttcttttagacaacatctgaaaaataaatcaaatacattgtagacaccgaaacaaaataaaata 52460686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 10094767 - 10094808
Alignment:
Q  35 gcagggccgttcctagagttttacgggtcttagccataatat 76  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||    
T  10094767 gcaggcccgttcctagagttttacgggccttaggcataatat 10094808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 49243635 - 49243598
Alignment:
Q  35 gcagggccgttcctagagttttacgggtcttagccata 72  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  49243635 gcagggccgttcctagagttttacgggccttaggcata 49243598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 14032326 - 14032362
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccata 72  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  14032326 cagggccgttcctagagttttacgggccttaggcata 14032362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 21320419 - 21320344
Alignment:
Q  172 accaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    ||||||||||| |||||| ||  ||||||||||||||||| |||||||  ||  ||||||||| |||||||||||||    
T  21320419 accaaataaatatttttttaggtaacatctgaaaataaatcaaatacttcat-aacaccaaaataaaataaaatatc 21320344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 23935643 - 23935683
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||| ||||||||||||||||||||| ||||| ||||||||    
T  23935643 caggaccgttcctagagttttacgggccttagacataatat 23935683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 28803654 - 28803694
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||| ||||||||||||||||||||| ||||| ||||||||    
T  28803654 caggcccgttcctagagttttacgggccttaggcataatat 28803694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 16729950 - 16729873
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16729950 actaccaaataaatgttttttaaa-aacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 16729873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 7972864 - 7972940
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  7972864 actaccaaataaatgttttttagataacatctgaaaataaattaaatactcaatatacacaaaaacaaaataaaata 7972940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 7263514 - 7263593
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||||||| |||||||    
T  7263514 actaccaaataaatgtttttttagataacatctgaaaataaattaaatactatatatacaccaaaacaaaatgaaatatc 7263593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 31597746 - 31597670
Alignment:
Q  169 actaccaaataaatgtttttt--agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  31597746 actacaaaataaatgttttttttagacaacatctgaaaataaattaaatattctatatacaccaaaacaaaataaaa 31597670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 45117690 - 45117614
Alignment:
Q  169 actaccaaataaatgtttttt--agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  45117690 actacaaaataaatgttttttttagacaacatctgaaaataaattaaatattctatatacaccaaaacaaaataaaa 45117614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 3762919 - 3762844
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||    
T  3762919 actacaaaataaatgtttttttagacaacatctgataataaattaaatattctatatacaccaaaacaaaataaaa 3762844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 40971646 - 40971595
Alignment:
Q  171 taccaaataaatgttttttagacaacatctgaaaataaattaaatactctat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40971646 taccaaataaatgttttttagacaacatctgaaaataaattaaatactctat 40971595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 1981820 - 1981744
Alignment:
Q  169 actaccaaataaatgtttttt--agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||||||| |||||  |||||||||||||||||||    
T  1981820 actacaaaataaatgttttttttagacaacatctgaaaataaattaaatattctatacacaccaaaacaaaataaaa 1981744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 39906458 - 39906390
Alignment:
Q  174 caaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||| |||| ||||| |||||||||    
T  39906458 caaataaatgttttttaaacaacatttgaaaataaattaaatactctatataca-caaaaaaaaataaaa 39906390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 602012 - 602090
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatat 246  Q
    ||||||||||||||||||||| |||| |||||||||||||||| |||||||  ||  ||| ||||||||||||||||||    
T  602012 actaccaaataaatgtttttttagacgacatctgaaaataaatcaaatacttcatagacaacaaaacaaaataaaatat 602090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 11647994 - 11648071
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    ||||||||||||||||||||| || ||||||||| |||| ||| |||||||  ||  |||| ||||||||||||||||    
T  11647994 actaccaaataaatgtttttttaggcaacatctgtaaatcaatcaaatacttcatagacacaaaaacaaaataaaata 11648071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 9381721 - 9381801
Alignment:
Q  169 actaccaaataaatg-ttttttagacaacatctgaaaa-taaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||| |||||| |||||| | ||||||||||||| ||||| |||||||| ||  |||||||||||||||||| ||||    
T  9381721 actaccaattaaatgatttttttggcaacatctgaaaaataaatcaaatactccatagacaccaaaacaaaataaagtatc 9381801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 35824339 - 35824271
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaa 236  Q
    |||||| ||| |||||||||| ||||||||||||||||||||| |||||||| ||  ||||| ||||||    
T  35824339 actacccaatgaatgttttttcagacaacatctgaaaataaatcaaatactccatagacacctaaacaa 35824271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 24190087 - 24190145
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaa 242  Q
    ||||||| ||| ||||||||||||||| ||||||| |||  ||||||||||||| ||||    
T  24190087 ttttttaaacaccatctgaaaataaatcaaatactttatagacaccaaaacaaactaaa 24190145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 28374282 - 28374332
Alignment:
Q  194 aacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaat 244  Q
    ||||||||||||||||| |||||||  ||  ||||||||||||||||||||    
T  28374282 aacatctgaaaataaatcaaatacttcatagacaccaaaacaaaataaaat 28374332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 9137891 - 9137834
Alignment:
Q  188 ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||| ||||||||||||||||| |||||||| |||  | ||||||||||| |||||||    
T  9137891 ttaggcaacatctgaaaataaactaaatactttatagaaaccaaaacaaactaaaata 9137834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 1981940 - 1981900
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||| ||||||||||||||||||||| ||||| ||||||||    
T  1981940 caggcccgttcctagagttttacgggccttagacataatat 1981900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 7972731 - 7972771
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||||||||||||||||||||| ||| ||||| ||||||||    
T  7972731 cagggccgttcctagagttttatgggccttaggcataatat 7972771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 16730085 - 16730045
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    ||||| |||||||||||||||||||| ||||| ||||||||    
T  16730085 cagggtcgttcctagagttttacgggccttaggcataatat 16730045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 45117811 - 45117771
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||| ||||||||||||||||||||| ||||| ||||||||    
T  45117811 caggcccgttcctagagttttacgggccttaggcataatat 45117771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 52448364 - 52448286
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  52448364 actaccaaataaatgttttttagataacatctgaaaataaattaaatactctatatacaccaaaacaaaatgaaatatc 52448286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 10994030 - 10994105
Alignment:
Q  169 actaccaaataaatgtttt-ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  10994030 actacaaaataaatgtttttttagacaacatctgaaaataaattaaatattctatatacaccaaaacaaaataaaa 10994105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 3917585 - 3917662
Alignment:
Q  169 actaccaaataaatgtttt-ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||||    
T  3917585 actaccaaataaatgtttttttagacaacatttgaaaataaatcaaatactctattgacaccaaaacaaaataaaata 3917662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 15761082 - 15761007
Alignment:
Q  169 actaccaaataaatg-ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| ||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||    
T  15761082 actacaaaataaatggttttttagacaacatttgaaaataaattaaatattctatatacaccaaaacaaaataaaa 15761007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 25071866 - 25071791
Alignment:
Q  169 actaccaaataaatgttt-tttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  25071866 actacaaaataaatgtttctttagacaacatctgaaaataaattaaatattttatatacaccaaaacaaaataaaa 25071791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 53076865 - 53076924
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  53076865 ttttttagacaacatctgaaaataaattaaatattctatatacaccaaaacaaaataaaa 53076924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 27941396 - 27941472
Alignment:
Q  169 actaccaaataaatgtttt--ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||  |||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  27941396 actacaaaataaatgttttttttagacaacatctgaatataaattaaatattctatatacaccaaaacaaaataaaa 27941472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 19157317 - 19157241
Alignment:
Q  169 actaccaaataaatgtttttt--agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaa 243  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||||||| | |||  |||||||||||||||||||    
T  19157317 actacaaaataaatgttttttttagacaacatctgaaaataaattaaatattttatacacaccaaaacaaaataaaa 19157241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 47185572 - 47185493
Alignment:
Q  169 actaccaaataaatgtttttt-agacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    ||||||||||||||||||||| || |||||||| ||||||||| |||||||||||  ||| |||||||| ||||||||||    
T  47185572 actaccaaataaatgtttttttaggcaacatctaaaaataaatcaaatactctatagacatcaaaacaacataaaatatc 47185493  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 10992823 - 10992881
Alignment:
Q  184 ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaa 242  Q
    |||||||||||| |||||||||||||| ||||| | |||  ||||||||||||||||||    
T  10992823 ttttttagacaaaatctgaaaataaatcaaatattttatagacaccaaaacaaaataaa 10992881  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 33100338 - 33100388
Alignment:
Q  194 aacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaat 244  Q
    ||||| ||||||||||| |||||||||||  ||||||||||||||||||||    
T  33100338 aacatttgaaaataaatcaaatactctatagacaccaaaacaaaataaaat 33100388  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 12893503 - 12893446
Alignment:
Q  188 ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||| |||||| ||||||||||| ||||||||||| |||||||||| || ||||||||    
T  12893503 ttaggcaacatatgaaaataaatcaaatactctatatacaccaaaataatataaaata 12893446  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 44663059 - 44663134
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    |||||||||||| | |||| ||||||| |||||||||||||| ||||||| |||  ||||||||| |||| ||||||    
T  44663059 actaccaaataatt-ttttatagacaatatctgaaaataaatcaaatactttatagacaccaaaataaaacaaaata 44663134  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 9467123 - 9467173
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactc 219  Q
    |||||||||||||| |||||||| | |||||| ||||||||| ||||||||    
T  9467123 actaccaaataaatattttttaggctacatcttaaaataaatcaaatactc 9467173  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 44880041 - 44879963
Alignment:
Q  169 actaccaaataaatgttttttaga-caacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatat 246  Q
    |||||||||||||| ||||||  | ||||||||||| |||||| |||||||   |  ||||||||||||||||||||||    
T  44880041 actaccaaataaatatttttttaagcaacatctgaatataaatcaaatacttcttagacaccaaaacaaaataaaatat 44879963  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 1418207 - 1418247
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    ||||||||||||||||||||||| || ||||| ||||||||    
T  1418207 cagggccgttcctagagttttacaggccttaggcataatat 1418247  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 10993910 - 10993950
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||| ||||||||||||||||||||| ||||| ||||||||    
T  10993910 caggcccgttcctagagttttacgggccttaggcataatat 10993950  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 25071997 - 25071957
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||| ||||||||||||||||||||| ||||| ||||||||    
T  25071997 caggcccgttcctagagttttacgggccttaggcataatat 25071957  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 27941264 - 27941304
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||| ||||||||||||||||||||| ||||| ||||||||    
T  27941264 caggcccgttcctagagttttacgggccttaggcataatat 27941304  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 36641880 - 36641844
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccata 72  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  36641880 cagggccgttcctagagttttacgggccttaggcata 36641844  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 40145831 - 40145791
Alignment:
Q  36 cagggccgttcctagagttttacgggtcttagccataatat 76  Q
    |||||| |||||||||||||||| |||||||| ||||||||    
T  40145831 cagggctgttcctagagttttacaggtcttaggcataatat 40145791  T

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Target: scaffold0385 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 1189 - 1111
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||| ||||||||||||||||||  ||||| ||||||||||| |||||||| ||  |||||||||||||||||||||||    
T  1189 actatcaaataaatgttttttaggtaacatatgaaaataaatcaaatactccatagacaccaaaacaaaataaaatatc 1111  T

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Target: scaffold0137 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 21061 - 21130
Alignment:
Q  169 actaccaaataaatgtttt-ttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaa 237  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||  |||||||||||||    
T  21061 actaccaaataaatgtttttttagacaacatttgaaaataaatcaaatactctattgacaccaaaacaaa 21130  T

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Target: scaffold0116 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 41191 - 41115
Alignment:
Q  169 actaccaaataaatgttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||| | |||||||| |||||||||||| ||||| ||||||| |||  |||||||||||||||||||||||    
T  41191 actaccaaataatt-ttttttagccaacatctgaaa-taaatcaaatactttatagacaccaaaacaaaataaaatatc 41115  T

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Target: scaffold0093 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 51071 - 51011
Alignment:
Q  169 actaccaaataaatg--ttttttagacaacatctgaaaataaattaaatactctatgtaca 227  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||||||| ||||| ||||    
T  51071 actacaaaataaatgatttttttagacaacatctgaaaataaattaaatattctatataca 51011  T

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Target: scaffold0229 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 14339 - 14287
Alignment:
Q  195 acatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatc 247  Q
    |||||||||||||||||||||| || ||  ||| |||||||||||||||||||    
T  14339 acatctgaaaataaattaaatattccatagacatcaaaacaaaataaaatatc 14287  T

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Target: scaffold1266 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 1793 - 1718
Alignment:
Q  171 taccaaataaatg-ttttttagacaacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaata 245  Q
    ||||||||||||| |||||||| |||||||||||||||||| ||| |||  ||  ||| |||| ||||||||||||    
T  1793 taccaaataaatgattttttaggcaacatctgaaaataaatcaaacacttcatagacagcaaaccaaaataaaata 1718  T

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Target: scaffold0311 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 4569 - 4606
Alignment:
Q  35 gcagggccgttcctagagttttacgggtcttagccata 72  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  4569 gcagggccgttcctagagttttacgggccttaggcata 4606  T

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