View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5104_low_18 (Length: 235)
Name: NF5104_low_18
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5104_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 41 - 234
Target Start/End: Complemental strand, 4525706 - 4525513
Alignment:
| Q |
41 |
tcccgaaacttgtgggtataggaaattgatattggtnnnnnnntgtaacagtcatatacaacctcagtaaactaatgagaaacatgagaaacatggtatg |
140 |
Q |
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| T |
4525706 |
tcccgaaagttgtgggtataggaaattaatattggtaaaaaaatgtaacagtcatgtacaaactcagtaaactaatgagaaacatgagaaacatggtatg |
4525607 |
T |
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| Q |
141 |
tgcacattaatcaaataattagaataaggaaaatacttgtgtttcacgagaagtttgagccaacaaagcatcaagtttcccctttcttgtagta |
234 |
Q |
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| T |
4525606 |
tgcacattaatcaaataattagaataaggaaaatacttgtgtttcatgagaagtttgagccaacaaagcatcaagtttcccctttcttgtagta |
4525513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 148 - 235
Target Start/End: Complemental strand, 4533890 - 4533803
Alignment:
| Q |
148 |
taatcaaataattagaataaggaaaatacttgtgtttcacgagaagtttgagccaacaaagcatcaagtttcccctttcttgtagtat |
235 |
Q |
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| T |
4533890 |
taatcaaataattagaataaggaatatacttgtgtttccagagaagtttgagccaacaaagcagcaagtttcctctttcttgtagtat |
4533803 |
T |
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