View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5104_low_3 (Length: 512)
Name: NF5104_low_3
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5104_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 20 - 502
Target Start/End: Complemental strand, 35672024 - 35671540
Alignment:
| Q |
20 |
atttcttgctgttaagaccaccgtgacgcctataaacgccagttgcttcactatctccagtccaatgcctttgtttgcacctgtaactactgcataccta |
119 |
Q |
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| T |
35672024 |
atttcttgctgttaagaccaccgtgacgcctaaaaacgccagttgcttcactatctccagtccaatgcctttgtttgcacctgtaactactgcataccta |
35671925 |
T |
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| Q |
120 |
tacatataaaccagatcatgtgtcagccgcaacacaaccttgtacagtcatgcattaatttataccattttgtttacttctgaaaatgtagaagtttgag |
219 |
Q |
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| T |
35671924 |
tacatataaaccagatcatgttgcagccgcaacacaaccttgtacagtcatgcattaatttataccattttgtttacttctgaaaatgtagaagtttgag |
35671825 |
T |
|
| Q |
220 |
ttttaggtgtcatcaggatgattttcaagcctatggtttaaagaaatggtggttctcacctttgtgccacatatcttccatttgattccatatatggaat |
319 |
Q |
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| T |
35671824 |
ttttaggtgtcatcaggatgattatcaagcctatggtttaaagaaatggtggttctcacctttgtgccacatatcttccatttgattccatatatggaat |
35671725 |
T |
|
| Q |
320 |
gatgttctagttgaggatatgcaaaaggactcttaagtttatataacctgcaaaattttaaatgttgaattcagttaagttaaaattttaaggaatcatt |
419 |
Q |
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| T |
35671724 |
gatgttctagttgaggatatgcaaaaggactcttaagtttatataacctgcaaaattttaaatgttgaattcagttaagttaaaattttaaggaatcatt |
35671625 |
T |
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| Q |
420 |
caaaatcttaagagtttctccattttttatagattgacaata--tctaatctaataaataaagttactactacgtactacctatg |
502 |
Q |
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| T |
35671624 |
caaaatcttaagagtttctccattttgtatagattgacaatatctctaatttaataaataaagttactactacgtactacctatg |
35671540 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 11992058 - 11992114
Alignment:
| Q |
63 |
tgcttcactatctccagtccaatgcctttgtttgcacctgtaactactgcataccta |
119 |
Q |
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||||| |||||||| | ||||| ||||||||||||||||| || |||||||||||| |
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| T |
11992058 |
tgctttactatctctaacccaattcctttgtttgcacctgtcaccactgcataccta |
11992114 |
T |
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