View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5104_low_4 (Length: 476)

Name: NF5104_low_4
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5104_low_4
NF5104_low_4
[»] chr3 (3 HSPs)
chr3 (1-89)||(37833704-37833792)
chr3 (189-317)||(37834918-37835048)
chr3 (414-442)||(37835117-37835145)
[»] chr1 (1 HSPs)
chr1 (50-89)||(9653884-9653923)


Alignment Details
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 37833704 - 37833792
Alignment:
Q  1 tttttatgagttgtataaatttctaataacagtggtaatcctnnnnnnncagaaatagaacgatttgatacatgtaacacattcaagag 89  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  37833704 tttttatgagttgtataaatttctaataacagtggtaatcctaaaaaaacagaaatagaacgatttgatacatgtaacacattcaagag 37833792  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 189 - 317
Target Start/End: Original strand, 37834918 - 37835048
Alignment:
Q  189 ctcttgaagtcttgcgcataaaattaatttcttaaactctaaacnnnnnnntatgttcttaaaactcgtattggcaggattaaataacgnnnnnnngttg 288  Q
    ||||||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||||||       ||||    
T  37834918 ctcttgaagtcttgcgcataaaattaatttcttaa-ctctaaacaaaaaaatatgttcttaaaactcgtattggcaggattaaataacgaaaaaaagttg 37835016  T
Q  289 ttggatc---attattaagatattctggttca 317  Q
    |||||||   ||||||||||||||||||||||    
T  37835017 ttggatcattattattaagatattctggttca 37835048  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 37835117 - 37835145
Alignment:
Q  414 caaatggttagcaaaatttataaagtaca 442  Q
    |||||||||||||||||||||||||||||    
T  37835117 caaatggttagcaaaatttataaagtaca 37835145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 9653884 - 9653923
Alignment:
Q  50 cagaaatagaacgatttgatacatgtaacacattcaagag 89  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  9653884 cagaaatagatggatttgatacatgtaacacattcaagag 9653923  T

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