View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5104_low_7 (Length: 441)

Name: NF5104_low_7
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5104_low_7
NF5104_low_7
[»] chr5 (5 HSPs)
chr5 (236-368)||(33108409-33108541)
chr5 (14-72)||(18594738-18594797)
chr5 (14-103)||(26703153-26703242)
chr5 (14-103)||(26972886-26972975)
chr5 (388-423)||(33108655-33108690)
[»] chr1 (2 HSPs)
chr1 (14-102)||(12141787-12141875)
chr1 (14-73)||(24981297-24981356)
[»] chr6 (1 HSPs)
chr6 (14-101)||(15517936-15518023)
[»] chr7 (1 HSPs)
chr7 (35-98)||(22301230-22301292)
[»] chr8 (2 HSPs)
chr8 (14-165)||(17028189-17028338)
chr8 (14-165)||(17558625-17558774)
[»] chr2 (1 HSPs)
chr2 (14-65)||(2590431-2590483)


Alignment Details
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 236 - 368
Target Start/End: Original strand, 33108409 - 33108541
Alignment:
Q  236 caatgtcatcttaacttcaaagggtcaagccctagaaattattttatgatcaaatagagcatttcctttaccaaatttcatggcaatgaatgaaacctcc 335  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33108409 caatgtcgtcttaacttcaaagggtcaagccttagaaattattttatgatcaaatagagcatttcctttaccaaatttcatggcaatgaatgaaacctcc 33108508  T
Q  336 taatgtgattaagaaactgaaaaacaagcaaaa 368  Q
    ||| |||||||||||||||||||||| ||||||    
T  33108509 taacgtgattaagaaactgaaaaacaggcaaaa 33108541  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 18594797 - 18594738
Alignment:
Q  14 atatcaggagatgtaacccataa-ctcaatattttagatgaggaaaaataatttgtgtat 72  Q
    |||||||||||||||||||| || |||||||||||||||||| |||||||| ||||||||    
T  18594797 atatcaggagatgtaacccaaaaactcaatattttagatgagaaaaaataagttgtgtat 18594738  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 26703153 - 26703242
Alignment:
Q  14 atatcaggagatgtaacccataa-ctcaatattttagatgaggaaaaataatttgtgtatagataaatataaagtggagggagtatatatg 103  Q
    |||||| |||||||||||  ||| ||||||||||| ||||||  ||||||||||| |||||||||||||  |||| |||||||||||||||    
T  26703153 atatcaagagatgtaacctgtaaactcaatattttggatgagagaaaataatttgagtatagataaataagaagt-gagggagtatatatg 26703242  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 26972886 - 26972975
Alignment:
Q  14 atatcaggagatgtaacccataa-ctcaatattttagatgaggaaaaataatttgtgtatagataaatataaagtggagggagtatatatg 103  Q
    |||||| |||||||||||  ||| ||||||||||| ||||||  ||||||||||| |||||||||||||  |||| |||||||||||||||    
T  26972886 atatcaagagatgtaacctgtaaactcaatattttggatgagagaaaataatttgagtatagataaataagaagt-gagggagtatatatg 26972975  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 423
Target Start/End: Original strand, 33108655 - 33108690
Alignment:
Q  388 gtagattgtaagtaaaccgaagctgcacgcttaacc 423  Q
    ||||||||||||||||| ||||||||||||||||||    
T  33108655 gtagattgtaagtaaacggaagctgcacgcttaacc 33108690  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 12141787 - 12141875
Alignment:
Q  14 atatcaggagatgtaacccataa-ctcaatattttagatgaggaaaaataatttgtgtatagataaatataaagtggagggagtatatat 102  Q
    ||||||| |||| ||||||| || ||||||||||| ||||||| |||||||||||| | ||||||||||| |||| ||||||||||||||    
T  12141787 atatcagaagatataacccaaaaactcaatattttggatgagggaaaataatttgtatgtagataaatatgaagt-gagggagtatatat 12141875  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 24981297 - 24981356
Alignment:
Q  14 atatcaggagatgtaaccca-taactcaatattttagatgaggaaaaataatttgtgtata 73  Q
    ||||||||||||||||| ||  ||||||||||||| ||||| ||||||||| |||||||||    
T  24981297 atatcaggagatgtaacacagaaactcaatattttggatga-gaaaaataagttgtgtata 24981356  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 15518023 - 15517936
Alignment:
Q  14 atatcaggagatgtaacccataa-ctcaatattttagatgaggaaaaataatttgtgtatagataaatataaagtggagggagtatata 101  Q
    |||| ||||||||||||||| || |||||||||||  |||||| ||| |||||||||||||||||||||| |||| |||||||| ||||    
T  15518023 atatgaggagatgtaacccagaaactcaatattttgaatgagggaaattaatttgtgtatagataaatatgaagt-gagggagtgtata 15517936  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 22301230 - 22301292
Alignment:
Q  35 aactcaatattttagatgaggaaaaataatttgtgtatagataaatataaagtggagggagtat 98  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||||||| |||| ||||||||||    
T  22301230 aactcaatattttggatgagaaaaaataatatgtgtatagataaatatgaagt-gagggagtat 22301292  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 17028338 - 17028189
Alignment:
Q  14 atatcaggagatgtaacccataa-ctcaata-ttttagatgaggaaaaataatt-tgtgtatagataaatataaagtggagggagtatatatgcactgta 110  Q
    |||||||||||||||||| | || ||||||| |||| ||||||  ||||||||| |||||| | | ||| || ||||| |||||| ||||||||||||||    
T  17028338 atatcaggagatgtaacctagaaactcaataattttggatgagagaaaataattatgtgtaaaaagaaacatgaagtg-agggagaatatatgcactgta 17028240  T
Q  111 tgtatgcaggttgattattatatgtaccttgcgtattgctcgacgcaatatatat 165  Q
    ||    ||||||||||||| | |||||  |||||||||||  | |||||||||||    
T  17028239 tg----caggttgattattttctgtactctgcgtattgctgaaagcaatatatat 17028189  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 17558774 - 17558625
Alignment:
Q  14 atatcaggagatgtaacccataa-ctcaata-ttttagatgaggaaaaataatt-tgtgtatagataaatataaagtggagggagtatatatgcactgta 110  Q
    |||||||||||||||||| | || ||||||| |||| ||||||  ||||||||| |||||| | | ||| || ||||| |||||| ||||||||||||||    
T  17558774 atatcaggagatgtaacctagaaactcaataattttggatgagagaaaataattatgtgtaaaaagaaacatgaagtg-agggagaatatatgcactgta 17558676  T
Q  111 tgtatgcaggttgattattatatgtaccttgcgtattgctcgacgcaatatatat 165  Q
    ||    ||||||||||||| | |||||  |||||||||||  | |||||||||||    
T  17558675 tg----caggttgattattttctgtactctgcgtattgctgaaagcaatatatat 17558625  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 2590483 - 2590431
Alignment:
Q  14 atatcaggagatgtaacccataa-ctcaatattttagatgaggaaaaataatt 65  Q
    |||||||||||| ||||||| || ||||||||||||||||||  |||||||||    
T  2590483 atatcaggagatataacccagaaactcaatattttagatgagagaaaataatt 2590431  T

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