View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5104_low_8 (Length: 426)
Name: NF5104_low_8
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5104_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 22 - 417
Target Start/End: Original strand, 26392623 - 26393017
Alignment:
| Q |
22 |
aatttctgtggcattaaatgaatgccaaagattgcctccactttgttgagcacattctcttcaaccatcagcttggctccggtgccttttttcctcggca |
121 |
Q |
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| T |
26392623 |
aatttatgtggcattaaatgaatgccaaagattgcctccactttgttgagcacattctcttcaaccatcagcttcgctccggtgcctttt-tcctcggca |
26392721 |
T |
|
| Q |
122 |
ggttggaatataagaacaacagtagcttgcatgtgaatgatttagttttcaatggaagattttccataaagctcatttaaaaaatttccaattccacttt |
221 |
Q |
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| T |
26392722 |
ggttggaatataagaacaacagtagcttgcatgtgaatgatttagttttcaatggaagattttccataaagctcatttaaaaaatttccaattccacttt |
26392821 |
T |
|
| Q |
222 |
acctttaatatatctttcatttcttgcagtatctttgcagcaccgagaagcatcacaacatgggcatcgtgtgcacaagcatgcattttcccgtctactt |
321 |
Q |
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| T |
26392822 |
acctttaatatatctttcatttcttgcagtatctttgcagcaccgagaagcatcacaacatgggcatcgtgtgcacaagcatgtattttcccgtctactt |
26392921 |
T |
|
| Q |
322 |
tgctcttatgatcccaatcaacaagttcttgtgggcaggaagtatataccagattaaagatttgacaggaacaaacatattgtgctatatattctt |
417 |
Q |
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| T |
26392922 |
tgctcttatgatcccaatcaacaagttcctgtgggcaggaagtatataccagattaaagatttgacaggaacaaacatattgtgctatattttctt |
26393017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 109 - 411
Target Start/End: Complemental strand, 26264567 - 26264265
Alignment:
| Q |
109 |
tttttcctcggcaggttggaatataagaacaacagtagcttgcatgtgaatgatttagttttcaatggaagattttccataaagctcatttaaaaaattt |
208 |
Q |
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| T |
26264567 |
tttttcctccgctggttggaatataagaacaacagtagcctgcatgcgaagtatttagttttcaatggaagattgcccataaagctcatttaaatttttt |
26264468 |
T |
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| Q |
209 |
ccaattccactttacctttaatatatctttcatttcttgcagtatctttgcagcaccgagaagcatcacaacatgggcatcgtgtgcacaagcatgcatt |
308 |
Q |
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| T |
26264467 |
gcaattccactttacctttaatttatttttcatttcttgcagtatctttgcagcaccgagaagcatcgcaacatgggcatcgtgtgcacaagcatgcatt |
26264368 |
T |
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| Q |
309 |
ttcccgtctactttgctcttatgatcccaatcaacaagttcttgtgggcaggaagtatataccagattaaagatttgacaggaacaaacatattgtgcta |
408 |
Q |
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| T |
26264367 |
ttcccatctactttgctcttatgatcccaatcaacaagttcctgtgggcaggaagtatagaccagattaaggatttgacgggaacaaacttactgtccta |
26264268 |
T |
|
| Q |
409 |
tat |
411 |
Q |
| |
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||| |
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|
| T |
26264267 |
tat |
26264265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 206 - 343
Target Start/End: Original strand, 31838645 - 31838782
Alignment:
| Q |
206 |
tttccaattccactttacctttaatatatctttcatttcttgcagtatctttgcagcaccgagaagcatcacaacatgggcatcgtgtgcacaagcatgc |
305 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| | ||||| |||||||| |||||||||||| |
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| T |
31838645 |
tttccaattccactttacctttaacttgtctttcatttcttgcagtatctttgcagcaccaagaagcatcgccacatgtgcatcgtgcgcacaagcatgc |
31838744 |
T |
|
| Q |
306 |
attttcccgtctactttgctcttatgatcccaatcaac |
343 |
Q |
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||||| |||||||||||||| ||||||||||||||||| |
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| T |
31838745 |
atttttccgtctactttgcttttatgatcccaatcaac |
31838782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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