View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5105-Insertion-1 (Length: 980)
Name: NF5105-Insertion-1
Description: NF5105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5105-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 649; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 8 - 856
Target Start/End: Complemental strand, 33599706 - 33598844
Alignment:
| Q |
8 |
gtttggacagcaggagcacttgttttaagtctctgttaggtgcnnnnnnnggctagtttttatgtctctattaggtgtgttttggcataacacaggtgtg |
107 |
Q |
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| T |
33599706 |
gtttggacagcaggagcacttgttttaagtctctgttaggtgctttttttggctagtttttatgtctctattaggtgtgttttggcataacacaggtgtg |
33599607 |
T |
|
| Q |
108 |
gctaatgttggttgagattttcatgagcaacattccaaaacatgatgatctcaatagctttctgagctattattattatattgtcttgcatattgttcta |
207 |
Q |
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| T |
33599606 |
gctaatgttggttgagattttcatgagtaacattccaaaacatgatgatctcaatagctttctgagctattattattatattgtcttgcatattgttcta |
33599507 |
T |
|
| Q |
208 |
tctgtaaaatcatttgccaaaactgcgtaggcttgatgatatagctgaaccaatagctactctttctcttagttgtg--aagtccttttatgtttgatac |
305 |
Q |
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| T |
33599506 |
tctgtaaaatcatttgccaaaactgcgtaggcttgatgatatagctgaaccaatggctactctttctcttagttgtgaaaagcccttttatgtttgatac |
33599407 |
T |
|
| Q |
306 |
atattgttggtgcaaggctaaaaatccatttagacacatgtcagctttggaggctgatgtaactccctttatgaacaagctatccgaacacaagtatttt |
405 |
Q |
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| T |
33599406 |
atattgttggtgcagggctaaaaatccatttagacacatgtcagctttggaggctgatgtaactccctttatgaacaagctatccgaacacaagtatttt |
33599307 |
T |
|
| Q |
406 |
cctatttgttgattattttgatatatttttaatgtttaattatgtgaatattcatgggcaatgtcatctttttagtgttgcgggttcaa----------- |
494 |
Q |
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| T |
33599306 |
cctatttgttgattattttgatatatttttaatgtttaattatgtgaatattcatgggcaatgtcatctttttagtgttgtgggttcaatattcttgaaa |
33599207 |
T |
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| Q |
495 |
-----tactgctgcgcgtgtgccctttgacactggtgaccgagaatggtaaacttgtattttcaatctattttgtgnnnnnnnnnnnnnnnnnaacaaat |
589 |
Q |
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| T |
33599206 |
aagcttactgctgcgcgtgtggcctttgacactggtgaccgagaatggtaaacttgtattttcaatctattttgtg-------ttttttttttaacaaat |
33599114 |
T |
|
| Q |
590 |
ctattttgtgtgtttattcacattaaaaataaattttgaataaatattttgtagctttcgaaggcttcttgatgcgctaaacgctcatatagtaattctt |
689 |
Q |
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| T |
33599113 |
ctattttgtgtgtttattcacattaaaaataaattttgaataaatattttgtagctttcgaaggcttcttgatgcgctgaacgctgatataataattctt |
33599014 |
T |
|
| Q |
690 |
tttcttaagcttactctgtattttaaggtaatacactacactctgatacttacatgtttatattagatttagattgttggaaattgaaattatattatat |
789 |
Q |
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| T |
33599013 |
tttcttaagcttactccgtattttaaggtaatacactacactctgatacttacatgtttatattagatttagattgttggaaattgaaattatattatat |
33598914 |
T |
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| Q |
790 |
ttaaattgttgg-agttgaaacttcga-ttttttcttg-atactttcagctggtgaaaaagctcaaacga |
856 |
Q |
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| T |
33598913 |
ttaaatttttggaaattgaaactttgatttttttcttgaatactttcagctggtgaaaaagcttaaacga |
33598844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 44063090 - 44063173
Alignment:
| Q |
186 |
tattgtcttgcatattgttctatctgtaaaatcatttgccaaaactgcgtaggcttgatgatatagctgaaccaatagctactctttc |
273 |
Q |
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| T |
44063090 |
tattgtcttccatattgttctatctgtgaaatcatttgcaaaaac----taaacttgatgatacagctgaaccaatagctgctctttc |
44063173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 44063008 - 44063071
Alignment:
| Q |
123 |
gattttcatgagcaacattccaaaacatgatgatctcaatagctttctgagctattattattat |
186 |
Q |
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| T |
44063008 |
gattttcatgagcaacattccagaacatgatgaacccgatagctttcttagctattgttattat |
44063071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 46723425 - 46723348
Alignment:
| Q |
200 |
ttgttctatctgtaaaatcatttgccaaaactgcgtaggcttgatgatatagctgaaccaatagctactctttctctt |
277 |
Q |
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| T |
46723425 |
ttgttctgtctgtactatcatttaccaaaattacataggcttaatgatataactgaaccaataaccgctctttctctt |
46723348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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