View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5105-Insertion-2 (Length: 795)
Name: NF5105-Insertion-2
Description: NF5105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5105-Insertion-2 |
 | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 708; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 7 - 769
Target Start/End: Original strand, 53513576 - 53514339
Alignment:
| Q |
7 |
actgattaatcaattgattgtttttaatagagcatatatgcatattttagggttgaaccatttacagtttttaatagtttctaaccgtgtaaactagaag |
106 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
53513576 |
actgattaatctattgattgtttttaatagagtatatatgcatattttagggttgaaccatttacagtttttaataatttctaaccgtgtaaactagaag |
53513675 |
T |
|
| Q |
107 |
tatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtttcactgatagaccatctccagaacatttggatacagaagt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53513676 |
tatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtttcactgatagaccatctccagaacatttggatacagaagt |
53513775 |
T |
|
| Q |
207 |
aaagttgggcttagcatcaggaaatacagtctcaccaccttcttcaacgtcagaccttcataaggaccaaaaacaaggaattgtcaaatttgtatacaat |
306 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
53513776 |
aaagttgggctgagcatcaggaaatacagtctcaccaccttcttcaacgtcagacctacataaggaccaaaaacaaggaactgtcaaatttgtatacaat |
53513875 |
T |
|
| Q |
307 |
tccatcgtaaagcacaatgcaaaaccaatatatggaaagagaataaggctttacagatacataagaactgtagcaactcgtgggcctccattcttagtga |
406 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53513876 |
tccatcataaagcacaatgcaaaaccaatatatggaaagagaataaggctttacagatacataagaactgtagcaactcgtgggcctccattcttagtga |
53513975 |
T |
|
| Q |
407 |
cgaccccatcaggggtgtaatcgtaatgaggctcacatttttgctcgactccatagtgaataacatgaagtccttcttcattctctgcatatttaaaagt |
506 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
53513976 |
cgaccccatcagaggtgtaatcgtaatgaggctcacatttttgcccgactccatagtgaataacatgaagtccttctccattctctgcatatttaaaagt |
53514075 |
T |
|
| Q |
507 |
taaaacaacattaagcaacggtttcaagagttcagatttgggatgattaagaaaaggacactcgtttgtgacaatcaagatgcatgcaaatcaccttaaa |
606 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53514076 |
taaaacaatattaagcaacggtttcaagagttcagatttgggatgattaagaaaaggacactcgtttgtgacaatcaagatgcatgcaaatcaccttaaa |
53514175 |
T |
|
| Q |
607 |
cttactgttccacgagaggaccatctaccgacacattgagatagactgccacttaattagaaaaaataatgtgtcccatgtttcccactaaggtcctaag |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53514176 |
cttactgttccacgagaggaccatctaccgacacattgagatagactgccacttaattagaaaaaataatgtgtcccatgtttcccactaaggtcctaag |
53514275 |
T |
|
| Q |
707 |
acttaagtatatgtgcaacaagtttggtgta-tatgcacaatacttcaatatatgtgcagcaac |
769 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
53514276 |
acataagtatatgtgcaacaagtttggtgtattatgcacaatacttcaatatatgtgcagcaac |
53514339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 11 - 423
Target Start/End: Original strand, 53509971 - 53510383
Alignment:
| Q |
11 |
attaatcaattgattgtttttaatagagcatatatgcatattttagggttgaaccatttacagtttttaatagtttctaaccgtgtaaactagaagtatc |
110 |
Q |
| |
|
||||||| || |||||| |||||||||| || ||| ||||||||| ||||||| | || | ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53509971 |
attaatctatagattgtgtttaatagagaatgtatacatattttacagttgaacgagttgcggtttttaatagattctaaccgtgtaaactagaagtatc |
53510070 |
T |
|
| Q |
111 |
tagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtttcactgatagaccatctccagaacatttggatacagaagtaaag |
210 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||| | | ||| | |||||||||||||| | | | |
|
|
| T |
53510071 |
aagtgtgccatctggcttcatgctccgaaacagcagagcatcacccatttttggtttcactgatagacccttttcaggatatttggatacagaatttatg |
53510170 |
T |
|
| Q |
211 |
ttgggcttagcatcaggaaatacagtctcaccaccttcttcaacgtcagaccttcataaggaccaaaaacaaggaattgtcaaatttgtatacaattcca |
310 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
53510171 |
ttaggcttagcattaggaaatacagtctcaccaccttcttcaacgtcggaccttcataaggaccaaaaacaaggaactgtcaaatttgtatacaattcca |
53510270 |
T |
|
| Q |
311 |
tcgtaaagcacaatgcaaaaccaatatatggaaagagaataaggctttacagatacataagaactgtagcaactcgtgggcctccattcttagtgacgac |
410 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
53510271 |
tcgtaaagcacaacgcaaaaccaatatatcgaaagagaataaggctttacagatacataagaactgtagcaactcgcgggcctccattcttagtgacgac |
53510370 |
T |
|
| Q |
411 |
cccatcaggggtg |
423 |
Q |
| |
|
|||| ||| |||| |
|
|
| T |
53510371 |
cccaccagcggtg |
53510383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 82 - 510
Target Start/End: Original strand, 53523948 - 53524379
Alignment:
| Q |
82 |
agtttctaaccgtgtaaactagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtttcactgatagaccat |
181 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||| |||||||||||| | |||||||||||||||||| ||||||||||| ||||||||| || ||| | |
|
|
| T |
53523948 |
agtttctaaccatgtaagctagctgtatctagtgagccatctggcttaacgctccaaaacagcagagcatcgcccattttcggtttcactactaaaccct |
53524047 |
T |
|
| Q |
182 |
ctccagaac---atttggatacagaagtaaagttgggcttagcatcaggaaatacagtctcaccaccttcttcaacgtcagaccttcataaggaccaaaa |
278 |
Q |
| |
|
||||| | |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
53524048 |
ttccaggatgatatttggatacagaattaaagttgggcttagcattaggaaatacagtctcaccaccttcttcaacgtcagaccttcataagtaccaaaa |
53524147 |
T |
|
| Q |
279 |
acaaggaattgtcaaatttgtatacaattccatcgtaaagcacaatgcaaaaccaatatatggaaagagaataaggctttacagatacataagaactgta |
378 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
53524148 |
acaaagaactgtcaaatttgtatacaattccatcataaagcataatataaaaccaatatatggaaagagaataagggtttacagatacataaggactgta |
53524247 |
T |
|
| Q |
379 |
gcaactcgtgggcctccattcttagtgacgaccccatcaggggtgtaatcgtaatgaggctcacatttttgctcgactccatagtgaataacatgaagtc |
478 |
Q |
| |
|
||||||||||| |||||||| || |||| || || | | |||||||||||||||||||| |||| ||| ||||| |||||||||||| ||||||| |
|
|
| T |
53524248 |
gcaactcgtggacctccattgttggtgattctccaattaaagttgtaatcgtaatgaggctcaaatttctgcccgacttcatagtgaataatctgaagtc |
53524347 |
T |
|
| Q |
479 |
cttcttcattctctgcatatttaaaagttaaa |
510 |
Q |
| |
|
| ||| |||||||||||||||||||||||||| |
|
|
| T |
53524348 |
cctctccattctctgcatatttaaaagttaaa |
53524379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 462 - 769
Target Start/End: Original strand, 53510381 - 53510689
Alignment:
| Q |
462 |
gtgaataacatgaagtccttcttcattctctgcatatttaaaagttaaaacaacattaagcaacggtttcaagagttcagatttgggatgattaagaaaa |
561 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53510381 |
gtgaataacatgaagtccctcgccattctctgcatatttaaaagttaaaacaacattaagcaacggtttaaagagttcagatttgggatgattaagaaaa |
53510480 |
T |
|
| Q |
562 |
ggacactcgtttgtgacaatcaagatgcatgcaaatcaccttaaacttactgttccacgagaggaccatctaccgacacattgagatagactgccactta |
661 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53510481 |
agacactcgtttgtgacaagcaagttgcatgcaaatcaccttaaatttactgtttcacgagaggaccatctaccgacacattgagatagactgccactta |
53510580 |
T |
|
| Q |
662 |
attagaaaaaataatgtgtcccatgtttcccactaaggtcctaagacttaagtatatgtgcaacaagtttggtgta-tatgcacaatacttcaatatatg |
760 |
Q |
| |
|
|||||||| |||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
53510581 |
attagaaagaataatgtgtccaatgtttctaactaaggtcttaagacttaagtatatgtgcaacaagtttggcgtattatgcacaatacttctctatata |
53510680 |
T |
|
| Q |
761 |
tgcagcaac |
769 |
Q |
| |
|
||||||||| |
|
|
| T |
53510681 |
tgcagcaac |
53510689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 60 - 506
Target Start/End: Original strand, 53547540 - 53548004
Alignment:
| Q |
60 |
tgaaccatttacagtttttaatagtttctaaccgtgtaaactagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatt |
159 |
Q |
| |
|
||||||| ||| ||| ||||||||| ||||||||||||||| || | |||||||||| |||||||| |||||||||||||||||||||| || |||||| |
|
|
| T |
53547540 |
tgaaccagttaaagtatttaatagtccctaaccgtgtaaactggatgcatctagtgtggcatctggcctcatgctccaaaacagcagagcatcacccatt |
53547639 |
T |
|
| Q |
160 |
tttggtttcactgatagaccatctccagaacatttggata------------------cagaagtaaagttgggcttagcatcaggaaatacagtctcac |
241 |
Q |
| |
|
|||||||||| ||||||||| | || || ||||| |||| ||||| ||||||| | ||||||| |||||||||| ||||||| |
|
|
| T |
53547640 |
tttggtttcagtgatagaccctttctagcacattcagataaatcattccaccatggcacagaactaaagttcgccttagcagcaggaaatacggtctcac |
53547739 |
T |
|
| Q |
242 |
caccttcttcaacgtcagaccttcataaggaccaaaaacaaggaattgtcaaatttgtatacaattccatcgtaaagcacaatgcaaaaccaatatatgg |
341 |
Q |
| |
|
| |||||||||||||||||||| | |||||| ||||| | ||| |||||| || ||||||||||||||| |||||||| ||| |||||||| ||||| |
|
|
| T |
53547740 |
ctccttcttcaacgtcagacctacgtaaggagaaaaaagagggagctgtcaagttggtatacaattccatcacaaagcacactgccaaaccaatttatgg |
53547839 |
T |
|
| Q |
342 |
aaagagaataaggctttacagatacataagaactgtagcaactcgtgggcctccattcttagtgacgaccccatcaggggtgtaatcgtaatgaggctca |
441 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| || | ||||| || |||||| |||||||||||| |
|
|
| T |
53547840 |
aaagagaataagggtttacagatacataagaactgttgcaactcgttggcctccattcttagtgttgaactcatcaaggaagtaatcataatgaggctca |
53547939 |
T |
|
| Q |
442 |
catttttgctcgactccatagtgaataacatgaagtccttcttcattctctgcatatttaaaagt |
506 |
Q |
| |
|
|||||| | | ||||||||||||| ||| |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
53547940 |
tatttttccccaactccatagtgaagaacctgaagtccctctccattctctgcatatttaaaagt |
53548004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 518 - 669
Target Start/End: Original strand, 53524499 - 53524652
Alignment:
| Q |
518 |
taagcaacggtttcaagagttcagatttgggatgattaagaaaag-gacactcgtttgtgacaatcaagatgcat-gcaaatcaccttaaacttactgtt |
615 |
Q |
| |
|
|||| ||||||||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||| ||| ||||||||||| ||||| || |
|
|
| T |
53524499 |
taagaaacggtttcaagaattcagatatgggatgattaagaaaaaagacactcatttgtgacaatcaaattgcattgcacatcaccttaaatttactttt |
53524598 |
T |
|
| Q |
616 |
ccacgagaggaccatctaccgacacattgagatagactgccacttaattagaaa |
669 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
53524599 |
tcacgagagaaccatctaccgacgcattgaggtagactgccacttaattagaaa |
53524652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 563 - 676
Target Start/End: Original strand, 53548158 - 53548273
Alignment:
| Q |
563 |
gacactcgtttgtgacaatcaa-gatgca-tgcaaatcaccttaaacttactgttccacgagaggaccatctaccgacacattgagatagactgccactt |
660 |
Q |
| |
|
||||||| ||||||| |||||| | |||| |||| ||||||||||| |||||||| || |||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
53548158 |
gacactcatttgtgataatcaaagttgcactgcacatcaccttaaatttactgtttcatgagaggaccaactaccgacacattgagatagactgtcactt |
53548257 |
T |
|
| Q |
661 |
aattagaaaaaataat |
676 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
53548258 |
aattagaaagaataat |
53548273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 344 - 497
Target Start/End: Original strand, 20196798 - 20196948
Alignment:
| Q |
344 |
agagaataaggctttacagatacataagaactgtagcaactcgtgggcctccattctt-agtgacgaccccatcaggggtgtaatcgtaatgaggctcac |
442 |
Q |
| |
|
||||||||||| |||||| ||||||||||| |||||||||||| |||||||||||| | |||| | | || || |||||||||||||| || |
|
|
| T |
20196798 |
agagaataagggtttacaaatacataagaaatgtagcaactcgcgggcctccattccagaatgact----cgttagatctggaatcgtaatgaggcacaa |
20196893 |
T |
|
| Q |
443 |
atttttgctcgactccatagtgaataacatgaagtccttcttcattctctgcata |
497 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
20196894 |
atttctgcccgactccatagtgaataacctgaagtccctctccattctctgcata |
20196948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 20196688 - 20196740
Alignment:
| Q |
214 |
ggcttagcatcaggaaatacagtctcaccaccttcttcaacgtcagaccttca |
266 |
Q |
| |
|
||||||||| ||||||||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
20196688 |
ggcttagcagaaggaaatacggtctcaccgccttcttcaacatcagaccttca |
20196740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 715 - 769
Target Start/End: Original strand, 53524743 - 53524798
Alignment:
| Q |
715 |
atatgtgcaacaagtttggtgtat-atgcacaatacttcaatatatgtgcagcaac |
769 |
Q |
| |
|
|||||||||| || ||||||| || |||||||||||||||||||||||||| |||| |
|
|
| T |
53524743 |
atatgtgcaataaatttggtgcattatgcacaatacttcaatatatgtgcaacaac |
53524798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 16608909 - 16608804
Alignment:
| Q |
234 |
agtctcaccaccttcttcaacgtcagaccttcataaggaccaaaaacaaggaattgtcaaatttgtatacaattccatcgtaaagcacaatgcaaaacca |
333 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||| || |||||| |||||| |||||||||||| |
|
|
| T |
16608909 |
agtctcgccaccttcttcaacgtcagaccttcatcgggaccaaaaaccgggagttgtcgaatttgtataaaactccatcacaaagcataatgcaaaacca |
16608810 |
T |
|
| Q |
334 |
atatat |
339 |
Q |
| |
|
||||| |
|
|
| T |
16608809 |
ttatat |
16608804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 282 - 370
Target Start/End: Complemental strand, 65099 - 65011
Alignment:
| Q |
282 |
aggaattgtcaaatttgtatacaattccatcgtaaagcacaatgcaaaaccaatatatggaaagagaataaggctttacagatacataa |
370 |
Q |
| |
|
||||| ||||| ||||||||| |||||| |||||||| ||||||| ||||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
65099 |
aggaactgtcatgtttgtatacttttccattacaaagcacactgcaaaaacaatatatggaaagacaagaagaatttacagatacataa |
65011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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