View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5105_low_1 (Length: 491)
Name: NF5105_low_1
Description: NF5105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5105_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 87 - 477
Target Start/End: Complemental strand, 37437226 - 37436845
Alignment:
| Q |
87 |
caatatccatcaagacgtggagtgattctcatcatcccccattacaagtttattatcatttgctttttctgaacacatgacagtaagtaacaagcaaact |
186 |
Q |
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| T |
37437226 |
caatatccatcaagacgtggagtgattctcatcatcccccattacaagtttattatcatttgctttttctgaacacatgacagtaa----caagcaaact |
37437131 |
T |
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| Q |
187 |
aaaaacaacaataaactagaaaaattcatgattccagttggaacatatataagagaagcaaccgcagatttataaaacaaatgtctttgaaattagctaa |
286 |
Q |
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| T |
37437130 |
aaaaacaacaataa-ctagaaaaattcatgattccagttggaacata----agagaagcaaccgcagatttataaaacaaatgtctttgaaattagctaa |
37437036 |
T |
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| Q |
287 |
gcacgtgagacctttataaccttagcgaggcagttatcagtgggcttacattgtggcaaggtagtaacagggcaatctgggtttattcgctccaacctat |
386 |
Q |
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| T |
37437035 |
gcacgtgagacctttataaccttagcgaggcagttatcagtgggcttacattgtggcaaggtagtaacagggcaatctgggtttattcgctccaacctat |
37436936 |
T |
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| Q |
387 |
acaatacataatttagcaaacaaacaacaacattaaagaaaattttcacactgtgtttctcctaaaagaataattaacaagggaacatttt |
477 |
Q |
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| T |
37436935 |
acaatacataatttagcaaacaaacaacaacattaaagaaaattttcacactgtgtttctcctaaaagaataattaacaagtgaacatttt |
37436845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 37437336 - 37437258
Alignment:
| Q |
7 |
gtagcataggaattgtggtcagcaaggtctgggtatagacttatggtaacaaattaagcttcattgaaataaataacca |
85 |
Q |
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| T |
37437336 |
gtagcagaggaattgtggtcagcaaggtctgggtatagacttatggtaacaaattaagcttcattgaaataaataacca |
37437258 |
T |
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