View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5105_low_4 (Length: 258)
Name: NF5105_low_4
Description: NF5105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5105_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 15202895 - 15202652
Alignment:
| Q |
7 |
tttctcatcctcttcgatccaaatccatagcataatcgaaaaacatgaaaaatcgttgtaaaatcgcaacaaatgaaaccgctacaaaatcacaagtttt |
106 |
Q |
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| T |
15202895 |
tttctcatcctcttcgatccaaatccatagcataatcgaaaaacatgaaaaatcgttgtaagatcgcaacaaatgaaaccgctacaaaatcacaagtttt |
15202796 |
T |
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| Q |
107 |
cacacgattttgatgcactttgctcggtttcaatcgtttccattttgttaccatcatttgtcgtcgtcttcctaaaagctctatttcatccaataagaaa |
206 |
Q |
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| T |
15202795 |
cacacgattttgatgcactttgcttggtttcaatcgtttccattttgttaccatcatttgtcgtcgtcttcctaaaagctctatttcgtccaataagaaa |
15202696 |
T |
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| Q |
207 |
gagacaataaaggtgaaaatcgaagtgatgaagtagtgatgatg |
250 |
Q |
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| T |
15202695 |
gagacaataaaggtgaaaatcgaagtgatgaagtagtgatgatg |
15202652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 35947572 - 35947469
Alignment:
| Q |
133 |
gtttcaatcgtttccattttgttaccatcatttgtcgtcgtcttcctaaaagctc-tatttcatccaataagaaagagacaataaaggtgaaaatcgaag |
231 |
Q |
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| T |
35947572 |
gtttcaatcgtttccattttgttgccatcatctgtcaccgtcttcgtcaaa-ctcttattttgttcgataagaaagagacaatgaaggtgaaaatggaaa |
35947474 |
T |
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| Q |
232 |
tgatg |
236 |
Q |
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| T |
35947473 |
tgatg |
35947469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 11974254 - 11974149
Alignment:
| Q |
131 |
cggtttcaatcgtttccattttgttaccatcatttgtcgtcgtcttcctaaaagctct-atttcatccaataagaaagagacaataaaggtgaaaatcga |
229 |
Q |
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| T |
11974254 |
cggtttcaattgtttccatttggttgccatcatctgccgttgtcttcgtcaa-gctcttatttcattcagtaagaaagagacaacgaaggtgaaaatgga |
11974156 |
T |
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| Q |
230 |
agtgatg |
236 |
Q |
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| T |
11974155 |
aatgatg |
11974149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 21315208 - 21315158
Alignment:
| Q |
200 |
taagaaagagacaataaaggtgaaaatcgaagtgatg-aagtagtgatgat |
249 |
Q |
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| T |
21315208 |
taagaaagagacaatgaaggtgaaaatggaagtgatgcaagtagtgatgat |
21315158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 7339105 - 7339056
Alignment:
| Q |
128 |
gctcggtttcaatcgtttccattttgttaccatcatttgtcgtcgtcttc |
177 |
Q |
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| T |
7339105 |
gctcgatttcaattgattccattttgttaccatcatatgtcatcgtcttc |
7339056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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