View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5106_high_1 (Length: 603)
Name: NF5106_high_1
Description: NF5106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5106_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 497; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 12 - 587
Target Start/End: Original strand, 31695954 - 31696530
Alignment:
| Q |
12 |
atcatcagacaaagagactaacatgacgacggtggatggagaatagaggattatcattggaatcaagcaagagtttgggattggatggttgatgttgcac |
111 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31695954 |
atcattagacaaagagactaacatgacggtggtggattgagaatagaggattatcattggaatcaagcaagagtttgggattgggtggttgatgttgcac |
31696053 |
T |
|
| Q |
112 |
cttgaagaccatgttcccggatgcattggtgaactctagggtgccacgtggaatttgggcgtcttctttggaacagaagagatcgattgggatgtgttca |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31696054 |
cttgaagaccatgttcccggatgcattggtgaactctagggtgccacgtggaactcgggcgtcttctttggaacagaagagatcgattgggatgtgttca |
31696153 |
T |
|
| Q |
212 |
tcttctgtgcctgtatattcccaatcttctgaagtttccatttccatttttgttaattgttttctatttctcttaacagatttaatccatcactgtaaat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
31696154 |
tcttctgtgcctgtatattcccaatcttctgaagtttccatttccatttttgttaattgttttctattcctcttaacagatttaatccatcagtgtaaat |
31696253 |
T |
|
| Q |
312 |
aataatttactgcaatgtcgattcagatgtggtat-cccaatctaagtcaatatcaccgggccaaccaagtgagttgagatcgttggtaaaaatgagaat |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
31696254 |
aataatttactgcaatgtcgattcagatgtggtatccccaatctaagtcaatatcatcgggccaaccaagtgagatgagatcgtttgtaaaaatgagaat |
31696353 |
T |
|
| Q |
411 |
tgttcgatcttaattttttaattgcgtaatataaaaacaagaatagttaagtttttagccgttcgatcttaaatggatcaccaatatttaatggattgga |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31696354 |
cgttcgatcttaattttttaattgcgtaatatacaaatgagaatagttaattttttagccgttccatcttaaatggatcaccaatatttaatggattgga |
31696453 |
T |
|
| Q |
511 |
tgagattggttatgcacagaattaaaatgtttcaaatgaccaactatatcacaaaattaaaaacaagaccaccttat |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31696454 |
tgagattggttatgcacagaattaaaatgtttcaaatgaccaactatatcacaaaattaaaaacaagaccaccttat |
31696530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 86 - 254
Target Start/End: Original strand, 31689861 - 31690026
Alignment:
| Q |
86 |
ttgggattggatggttgatgttgcaccttgaagaccatgttcccggatgcattggtgaactctagggtgccacgtggaatttgggcgtcttctttggaac |
185 |
Q |
| |
|
||||||| || ||||||| | |||||||||||||| |||||||| ||||||| || ||| ||||| |||||||||||| | ||||| || |||||||| |
|
|
| T |
31689861 |
ttgggatcgggtggttgacggtgcaccttgaagactatgttccccgatgcatctgtaaacgctaggatgccacgtggaactccggcgtgttttttggaac |
31689960 |
T |
|
| Q |
186 |
agaagagatcgattgggatgtgttcatcttctgtgcctgtatattcccaatcttctgaagtttccattt |
254 |
Q |
| |
|
||| ||||||||||||||||||| |||||| |||||||| || ||| || |||||||||||||||| |
|
|
| T |
31689961 |
cgaaaagatcgattgggatgtgttgatcttcggtgcctgtgtactccaaa---tctgaagtttccattt |
31690026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 31689770 - 31689835
Alignment:
| Q |
22 |
aaagagactaacatgacgacggtggatggagaatagaggattatcattggaatcaagcaagagttt |
87 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
31689770 |
aaagagactaacatgatgacggtggatggaaaacagaggattatcattggaatcaagcaagagttt |
31689835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University