View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5106_high_10 (Length: 408)
Name: NF5106_high_10
Description: NF5106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5106_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 26748290 - 26748527
Alignment:
| Q |
1 |
tctgtataattttgtgtgtttgttcttgctgtagtatcatatatatcttttacgataccgaacttacatgtttaggtatcaataaaccaaaactttgaag |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26748290 |
tctgtataattttgtg--tttgttcttgctgtagtaccatatatatcttttacgataccgaacttacatgtttaggtatcaataaaccaaaactttgaag |
26748387 |
T |
|
| Q |
101 |
tattaaatatatgtgaaaaagaattcacttatagatattgtgtaacatctactttttaatctaatatgagacnnnnnnnnnnc-ctgacgttgaatatga |
199 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| | |
|
|
| T |
26748388 |
tattaaatatatgtgaaaaagaatccacttatagatattgtgtaacatctactttttaatctaatataagactctattttttctttgacgttgaatataa |
26748487 |
T |
|
| Q |
200 |
gactcttcttcacacttaacataccaatctttccctcaac |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26748488 |
gactcttcttcacacttaacataccaatctttccctcaac |
26748527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 294 - 386
Target Start/End: Original strand, 26748535 - 26748627
Alignment:
| Q |
294 |
ctacatacatttgctgcaacacctttcaaatatatagacattcgttgatagctaaagttttgttgagactggccgttgacaaacatcatctat |
386 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26748535 |
ctacatacatttgctgcaacacccttcaaatatatagacattcgttgatagctaaagttttgttgagactggccattgacaaacatcatctat |
26748627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University