View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5106_high_14 (Length: 305)
Name: NF5106_high_14
Description: NF5106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5106_high_14 |
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| [»] chr5 (6 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 5e-90; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 62 - 305
Target Start/End: Original strand, 36956064 - 36956307
Alignment:
| Q |
62 |
cctcacaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgca |
161 |
Q |
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| T |
36956064 |
cctcacaattgtttcaacacttataatcacagcatcagtagcagcatgtttagctgttccaggtgaagcagaaggaaaagcacacaatctatgtcatgca |
36956163 |
T |
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| Q |
162 |
atgtttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgc |
261 |
Q |
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| T |
36956164 |
atgttccatgttttcattatcttcatcacaatatcattgttcagttcaattagtgctaccatcatactcttttgggcaacacttggattaactgaattgg |
36956263 |
T |
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| Q |
262 |
tgacttttactctcacactcgttatgccgctactttgaatcgct |
305 |
Q |
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| T |
36956264 |
taacttttactctcaaaattgttgtgccgcttcttggaatcgct |
36956307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 66 - 305
Target Start/End: Original strand, 36935214 - 36935453
Alignment:
| Q |
66 |
acaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaatgt |
165 |
Q |
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| T |
36935214 |
acaattgtttcaacacttataatcactgcttcagtagcagcatgtttagccgttccatgtgaagcagaaggaaaagcacacaatctatgtcatacaatgt |
36935313 |
T |
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| Q |
166 |
ttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgctgac |
265 |
Q |
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| T |
36935314 |
ttcatgctttcattatcttcatcacagtatcattgttcagttccattagtgctaccatcatactcttttgggcaacatttgggttaactgaattgctgac |
36935413 |
T |
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| Q |
266 |
ttttactctcacactcgttatgccgctactttgaatcgct |
305 |
Q |
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| T |
36935414 |
tttacctctcaaaatcgttatgccgcttcttggaatcgct |
36935453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 36947998 - 36948186
Alignment:
| Q |
72 |
gtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaatgtttcaag |
171 |
Q |
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| T |
36947998 |
gtttcaacccttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagcaaacaacctatgtcatgcaatgtttcaag |
36948097 |
T |
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| Q |
172 |
cattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattg |
260 |
Q |
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| T |
36948098 |
cattcattatcttcatcacaatatcattattcagttccattagttctattatcatactcttttgggcaacacttggattaactgaattg |
36948186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 37069970 - 37069765
Alignment:
| Q |
63 |
ctcacaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaa |
162 |
Q |
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| T |
37069970 |
ctcacattggtttcaacacttataatcactgcttcagtagcagcatgttttgctgttccaggtgaagcggatggaaaagcaaacaacctatgtcatgcaa |
37069871 |
T |
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| Q |
163 |
tgtttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgct |
262 |
Q |
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| T |
37069870 |
tgttccaagctttcattatcttcatcacaatatcattgttcagttccattagttctactatcatactctttttggcaaaacttggattaactgaattggt |
37069771 |
T |
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| Q |
263 |
gacttt |
268 |
Q |
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|||||| |
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| T |
37069770 |
gacttt |
37069765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 37079730 - 37079525
Alignment:
| Q |
63 |
ctcacaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaa |
162 |
Q |
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| T |
37079730 |
ctcacattggtttcaacccttataatcactgcttcagtagcagcatgttttgctgttccaggtgaagcggatggaaaagcaaacaacctatgtcatgcaa |
37079631 |
T |
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| Q |
163 |
tgtttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgct |
262 |
Q |
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| T |
37079630 |
tgttccatgttttcattatattcatcacaatatcattgttcagttccattagttctactatcatactcttttgggcaaagcttggaatacctgaattggt |
37079531 |
T |
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| Q |
263 |
gacttt |
268 |
Q |
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|||||| |
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| T |
37079530 |
gacttt |
37079525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 36971668 - 36971718
Alignment:
| Q |
72 |
gtttcaacacttataatcacagcatcagtagcagcatgttttgctgttcca |
122 |
Q |
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| T |
36971668 |
gtttcaacacttataatcactgcatcagtagcagcatgttttggtgttcca |
36971718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 66 - 305
Target Start/End: Complemental strand, 12493756 - 12493517
Alignment:
| Q |
66 |
acaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaatgt |
165 |
Q |
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| T |
12493756 |
acaattgtttcaacacttataatcactgcttcagtagcagcatgtttagctgttccaggtgaagcagaaggaaaagcacacagcctatgtcatgcaatgt |
12493657 |
T |
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| Q |
166 |
ttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgctgac |
265 |
Q |
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| T |
12493656 |
tccatgctttcattatcttcatcacaatatcgttgttcagttccattagtgctactatcatactcttttgggcaacacttgggttaactgaattggtaac |
12493557 |
T |
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| Q |
266 |
ttttactctcacactcgttatgccgctactttgaatcgct |
305 |
Q |
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| T |
12493556 |
ttttactctcaaaatggtcatgccgcttcttggaatcgct |
12493517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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