View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5106_high_6 (Length: 496)
Name: NF5106_high_6
Description: NF5106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5106_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 151 - 486
Target Start/End: Original strand, 53089052 - 53089404
Alignment:
| Q |
151 |
ccggttaggtaattattctggtaatgtaatgcatatagcatacttatactcgctaaaattcat-----------------catggaacttcttggctagt |
233 |
Q |
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| T |
53089052 |
ccggttaggtaattattctggtaatgtgatgcatatagcatacttatactcgctaaaattcatacaaactcgtcactcatcatggaacttcttggctagt |
53089151 |
T |
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| Q |
234 |
tccctttttccttgaaaaaatacctccgataagtggaatcaatgacttcttcttcttcttcctaagagaagggtgcctttccaacttctcaacaccttga |
333 |
Q |
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| T |
53089152 |
tccctttttccttgaaaaaatacctcctataagtggaatcaatgacttcttcttcttcttcctaagagaagggtgcctttccaacttctcaacaccttga |
53089251 |
T |
|
| Q |
334 |
ggtaacatcacatgagaaacagacggtggattcgcgaacgtcacataccttttcttttgaaactccatcattaattcttcatcaaatcttgaacttttca |
433 |
Q |
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| T |
53089252 |
ggtaacatcacatgagaaacagacggtggattcgcgaacgtcacataccttttcttttgaaactccatcattaattcttcatcaaatcttgaacttttca |
53089351 |
T |
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| Q |
434 |
cttcaaaggttgttaaattctcaacaaacttcacgtcttcagtttctgatgat |
486 |
Q |
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| T |
53089352 |
cttcaaaggttgttaaattctcaacaaacttcacgtcttcagtttctgatgat |
53089404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 53088916 - 53088995
Alignment:
| Q |
17 |
actctactagtcgtcaactcacaaagttcaactacattttacacaatattattagaggcagttagatacatatgacacac |
96 |
Q |
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| T |
53088916 |
actctactagtcgtcaactcacaaagttcaactacattttacacaatattattagaggcagttagatacatatgacacac |
53088995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 151 - 486
Target Start/End: Original strand, 14333752 - 14334113
Alignment:
| Q |
151 |
ccggttaggtaattattctggtaatgtaatgcatatagcatacttatactcgctaaaattcat-----------------catggaacttcttggctagt |
233 |
Q |
| |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
14333752 |
ccggttaggtaattaatctggtaatgtaatgcatgaagcatacttatactcgctaaaattcatataaactcatcattcatcatggaacttcttggttagt |
14333851 |
T |
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| Q |
234 |
tccctttttccttgaaaaaatacctccgataagtggaatcaatgacttcttcttcttcttcctaagagaagggtgcctttccaacttctcaacacct--- |
330 |
Q |
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| T |
14333852 |
tccctttttcctagaaaatatgcctccaataagtggaatcaatgacttcttcttcttcttcctaagagaagggtgcctttccaacttctcaacaccttga |
14333951 |
T |
|
| Q |
331 |
------tgaggtaacatcacatgagaaacagacggtggattcgcgaacgtcacataccttttcttttgaaactccatcattaattcttcatcaaatcttg |
424 |
Q |
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| T |
14333952 |
tgaccttgaggtaacatgacatgagaaactgacggtggattcgcgaacgtcacataccttttcttttgaaattccatcattaattcttcatcaaatcttg |
14334051 |
T |
|
| Q |
425 |
aacttttcacttcaaaggttgttaaattctcaacaaacttcacgtcttcagtttctgatgat |
486 |
Q |
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| T |
14334052 |
aacttttcagttcaaaggttgttaaattctcaacaaacttcacgtcttcagtttctgatgat |
14334113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 14333618 - 14333689
Alignment:
| Q |
17 |
actctactagtcgtcaactcacaaagttcaactacattttacacaatattattagaggcagttagatacata |
88 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||| | |||||||||||||| |
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| T |
14333618 |
actctactagtcgtcacttcacaaagttcaactaaattttacacaatattattagcgacagttagatacata |
14333689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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