View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5106_high_8 (Length: 466)
Name: NF5106_high_8
Description: NF5106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5106_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 10448144 - 10447687
Alignment:
| Q |
1 |
aatggtgaagggccaatttcattgaaaattaaagggcccttacaaattgaatgatagtagcacactagcac--------cagttgataatgatactcctg |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10448144 |
aatggtgaagggccaatttcattgaaaattaaagggctcttacaaattgaatgatagtagcacactagcacgctagcaccagttgataatgatactcctg |
10448045 |
T |
|
| Q |
93 |
caatcttcatcaacaagaaaaccacaaaatgacccagaagaaagaaaaaagaatagattatttattattcttgaagcacccatttacaagccatgttgaa |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10448044 |
caatcttcatcaacaagaaaaccacaaaatgacccagaagaaagaaaaaagaatagattatttattattcttgaagcacccatttacaagccatgttgaa |
10447945 |
T |
|
| Q |
193 |
tatttaactctaaaatcatcaaaagcaaagaaagcaacattttttaagcattgagaatccaaagcatattaaattgggaattgggttttctacaattaag |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10447944 |
tatttaactctaaaatcatcaaaagcaaagaaagcaacaatttttaagcattgagaatccaaagcatattaaattgggaattgggttttctacaattaag |
10447845 |
T |
|
| Q |
293 |
caaatcaaagtcaaattgaaatataaaaggaacttacaaattattacagtatgtttaagatgctttctttcattacaagccacatgtttctaaatggaat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10447844 |
caaatcaaagtcaaattgaaatataaaaggaacttacaaattattacagtatgtttaagatgctttctttcattacaagccacatgtttctaaatggaat |
10447745 |
T |
|
| Q |
393 |
cgaatctgtgcaattaaagagtgaaacattgaagaaagaaccttaaaaacataagagg |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10447744 |
cgaatctgtgcaattaaagagtgaaacattgaagaaagaaccttaaaatcataagagg |
10447687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University