View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5106_low_11 (Length: 350)
Name: NF5106_low_11
Description: NF5106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5106_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 335
Target Start/End: Complemental strand, 8168877 - 8168554
Alignment:
| Q |
13 |
aaaattacatcaacttagataaacaaacataatataagataacgactaagactcgacataatctactcaactttaacattcaaccacatcggtccttctt |
112 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8168877 |
aaaattacatcaatttagataaataaacataatataagataacgaccaagactcgacataatctactcaactttaacatacaaccacatcggtccttctt |
8168778 |
T |
|
| Q |
113 |
tatcctcttcgaaccataacatatattttacatcaatgtcattcctcaagaagc-tgaaaattgtcacatatagtgtgggtgccattgtcattttcatct |
211 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8168777 |
tatcctcttcgaaccaaaacatatattttacatcaatgtcattcctcaagaagcttaaaaattgtcacatatagtgcgggtgccattgtcattttcatct |
8168678 |
T |
|
| Q |
212 |
ttcaacatgacgtgaggatgaccataaaaaatagaaaccacctttccagtatcacgagctaagtnnnnnnnngtggttgagttatttcttcaaccctaat |
311 |
Q |
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||||||| || || |||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
8168677 |
ttcaacaagatgtaaggatgaccataaaaaatagaaaccacctttcgagtatcacgatctaagtaaaaaaaagtggttgagttatttcttcaaccctaat |
8168578 |
T |
|
| Q |
312 |
ataacgtctttccaagagacatat |
335 |
Q |
| |
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|||||||||||| ||||||||||| |
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| T |
8168577 |
ataacgtctttctaagagacatat |
8168554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 41797540 - 41797581
Alignment:
| Q |
13 |
aaaattacatcaacttagataaacaaacataatataagataa |
54 |
Q |
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||||||||||||||||| ||||| ||||||||||||| |||| |
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| T |
41797540 |
aaaattacatcaacttaaataaataaacataatataacataa |
41797581 |
T |
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