View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5106_low_12 (Length: 346)
Name: NF5106_low_12
Description: NF5106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5106_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 337
Target Start/End: Complemental strand, 10448449 - 10448121
Alignment:
| Q |
9 |
gacatcatcaacaaagatgaactgatcaacactgaaaactcttcaagataagatattcttctcatgttgtaacagtcaaaccccaaaataacctcggtaa |
108 |
Q |
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| T |
10448449 |
gacataatcaacaaagatgaactgatcaacactgaaaactcttcaagataagatattcttctcatgttgtaacagtcaaaccccaaaataacctcagtaa |
10448350 |
T |
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| Q |
109 |
tttattcacagtgttataaacacactgaaatacaagtttataatcttcaatactaacacatgccaaaaactaataaataaataaataaggttgttaacta |
208 |
Q |
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| T |
10448349 |
tttattcacagtgttataaacacactgaaatacaagtttataatcttcaatactaacacatgccaaaaacaaataaataaataaataaggttgttaacta |
10448250 |
T |
|
| Q |
209 |
cttacaacttgtaaaagggaacatttttatgtaacttcaaaaataagttaagtgattctaactgaatagcaccaacagaaaaagcatccttatctgtttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10448249 |
cttacaacttgtaaaagggaacatttttatgtaacttcaaaaataagttaagtgattctaactgaatagcactaacagaaaaagcatccttatctgtttt |
10448150 |
T |
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| Q |
309 |
tggtgaatggtgaagggccaatttcattg |
337 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10448149 |
tggtgaatggtgaagggccaatttcattg |
10448121 |
T |
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