View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5106_low_13 (Length: 314)
Name: NF5106_low_13
Description: NF5106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5106_low_13 |
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| [»] scaffold0250 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 44624003 - 44623720
Alignment:
| Q |
20 |
gctttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttgga |
119 |
Q |
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| T |
44624003 |
gctttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttgaa |
44623904 |
T |
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| Q |
120 |
ctttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgtttt |
219 |
Q |
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| T |
44623903 |
ctttaaattcctcttcttttgattggaactccatcactcttatttcgaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgtttt |
44623804 |
T |
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| Q |
220 |
ttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaaactcatttacttgaccatcaagtatattctt |
303 |
Q |
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| T |
44623803 |
ttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaaactcatttacttgaccatcaagtatattctt |
44623720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 44614812 - 44614563
Alignment:
| Q |
20 |
gctttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttgga |
119 |
Q |
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| T |
44614812 |
gctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttccttcaaattcctctacctttgtttcaaacatt---ttcactcgac |
44614716 |
T |
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| Q |
120 |
ctttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgtttt |
219 |
Q |
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| T |
44614715 |
ctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctt |
44614616 |
T |
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| Q |
220 |
ttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaa |
272 |
Q |
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| T |
44614615 |
ttctgattcaaagtcctccaccaggccttcaaattcacccttttcagactcaa |
44614563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 39473637 - 39473743
Alignment:
| Q |
122 |
ttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgtttttt |
221 |
Q |
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||||||||||| |||||||| ||||||||| ||||| || | ||||| ||||||||||||||| | |||||| || | |||||||||| | | |||| |
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| T |
39473637 |
ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttctttt |
39473736 |
T |
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| Q |
222 |
ctgattc |
228 |
Q |
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||||||| |
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| T |
39473737 |
ctgattc |
39473743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 293
Target Start/End: Complemental strand, 39459064 - 39458917
Alignment:
| Q |
146 |
aactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggc |
245 |
Q |
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|||||| ||||| || |||||||| ||||||||||||||| | |||||| | | |||||||||| | | ||||||||||| || ||| ||| ||| |
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| T |
39459064 |
aactccttcacttgtccttcaaattgcttttcttttgattcgagctccttcagcctgctctcgaaatgcttcttttctgattccaactccttcacccggc |
39458965 |
T |
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| Q |
246 |
cttccaattcaccctttttagattcaaactcatttacttgaccatcaa |
293 |
Q |
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|||| |||||| ||| ||| ||||||| ||| ||| || ||||||||| |
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| T |
39458964 |
cttcaaattcatcctcttttgattcaatctcctttgctcgaccatcaa |
39458917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 39389332 - 39389417
Alignment:
| Q |
110 |
ttcacttggactttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactcctt |
195 |
Q |
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| T |
39389332 |
ttcacttgttcttcaaattcctcctcttttgattgaaactccttcacttttccttcgaatttctcctcttttgactcaagctcctt |
39389417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 39390708 - 39390741
Alignment:
| Q |
163 |
ttcaaattccttttcttttgattcaaactccttt |
196 |
Q |
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| T |
39390708 |
ttcaaattccttctcttttgattcaaactccttt |
39390741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 163 - 303
Target Start/End: Complemental strand, 40347507 - 40347367
Alignment:
| Q |
163 |
ttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcacccttt |
262 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| || | ||| |||||||||||| |
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| T |
40347507 |
ttcaaactccttttcttttgattcaaactccttttgtcggctctcgaaattcaatttttctgattcaaagtccttcatcagccattcaaattcacccttt |
40347408 |
T |
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| Q |
263 |
ttagattcaaactcatttacttgaccatcaagtatattctt |
303 |
Q |
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| T |
40347407 |
ttagattcaaactcatttactcgaccatcaagtatattctt |
40347367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 4375 - 4326
Alignment:
| Q |
23 |
ttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttt |
72 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||| |||| |
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| T |
4375 |
ttgacaaatttgagattgtcctcaacttggctttcaaattgctgcttttt |
4326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 51574654 - 51574601
Alignment:
| Q |
103 |
aagtactttcacttggactttaaattcctcttcttttgattggaactccatcac |
156 |
Q |
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|||||| ||||||||||||||||| ||||| |||||||||| |||||| |||| |
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| T |
51574654 |
aagtaccttcacttggactttaaagtcctcctcttttgattcaaactccttcac |
51574601 |
T |
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