View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5106_low_15 (Length: 300)
Name: NF5106_low_15
Description: NF5106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5106_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 6264344 - 6264074
Alignment:
| Q |
19 |
gtaattccattgatacaatctgtatttgacacgaacttcacaccgaatgaatttgatagctttgatgatgtgcttgatctatatgaaggaggaattaagc |
118 |
Q |
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| T |
6264344 |
gtaattccattgatacaatctgtatttgacacgaacttcacaccgaatgaatttgatagctttgatgatgtgcttgatctatatgaaggaggaattaagc |
6264245 |
T |
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| Q |
119 |
taccaacagatatacttagccaaattagtcctttaccagtgttatcagaaatctttagaactgatggtgaacaattcctcaagtttcctacacctaaagt |
218 |
Q |
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| T |
6264244 |
taccaacagatatacttagccaaattagtcctttaccagtgttatcagaaatctttagaactgatggtgaacaattcctcaagtttcctacacctaaagt |
6264145 |
T |
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| Q |
219 |
aattcaaggtatatcactatatcataccttttgcgaaacaaccacttattggattctttgctcgccttcat |
289 |
Q |
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| T |
6264144 |
aattcaaggtatatcactatatcataccttttgcgaaacaaccacttattggattctttgctcgccttcat |
6264074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 6451822 - 6451734
Alignment:
| Q |
55 |
ttcacaccgaatgaatttgatagctttgatgatgtgcttgatctatatgaaggaggaattaagctaccaacagatatacttagccaaat |
143 |
Q |
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| T |
6451822 |
ttcaccccgaatgagtttgatagcttcgatgaagtgcgtggacttttcgaaggtggaattaagcttcctacagatatactcagccaaat |
6451734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 206
Target Start/End: Complemental strand, 6457864 - 6457761
Alignment:
| Q |
103 |
gaaggaggaattaagctaccaacagatatacttagccaaattagtcctttaccagtgttatcagaaatctttagaactgatggtgaacaattcctcaagt |
202 |
Q |
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| T |
6457864 |
gaaggtgggattaagcttcctacagatatacttagtcaaattagtcccttaccggcccttaaggaaatctttcgcactgacggtgaacaagtcctcaagt |
6457765 |
T |
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| Q |
203 |
ttcc |
206 |
Q |
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| T |
6457764 |
ttcc |
6457761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 42694004 - 42693829
Alignment:
| Q |
55 |
ttcacaccgaatgaatttgatagctttgatgatgtgcttgatctatatgaaggaggaattaagctaccaacagatatacttagccaaattagtcctttac |
154 |
Q |
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| T |
42694004 |
ttcacaccaaatgagtttgatagctttgatgaagttcatggattgtatgagggtggaattaagctgccaacagatgtacttagcaagataagtccgttac |
42693905 |
T |
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| Q |
155 |
cagtgttatcagaaatctttagaactgatggtgaacaattcctcaagtttcctacacctaaagtaattcaaggtat |
230 |
Q |
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| T |
42693904 |
ctgttctcaaagaaatctttcgaaccgatggtgaacagttcctcaagtatccaccacctaaagtacttcaaggtat |
42693829 |
T |
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