View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5106_low_16 (Length: 274)
Name: NF5106_low_16
Description: NF5106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5106_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 9773238 - 9772984
Alignment:
| Q |
14 |
atcattctgccgcagttttcgatgaacccattgaaacaactgcaaaaagtatagacatgagttaagatttaagtctggaagaattttttcattctaaatt |
113 |
Q |
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| T |
9773238 |
atcattctgccgcagttttcgatgaacccattgaaacaactgcaacaagtatagacatgggttaagattaaagtctggaagaattttttcattctaaatt |
9773139 |
T |
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| Q |
114 |
ggttgagattagacataccttcattttgactcttttcttaatttgttaacctaggtttctcacacttataaataagaatggaaaaaggtcttcaggattt |
213 |
Q |
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| T |
9773138 |
ggttgagattagacataccttcattttgactcttttcttaatttgttaacctaggtttctcacacttataaataagaatggaaaaaggtcttcaggattt |
9773039 |
T |
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| Q |
214 |
ggtggttatgattgataaagtgaaaaggcacaatgagttggaatttggtatatgc |
268 |
Q |
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| T |
9773038 |
ggtggttatgattgataaagtgaaaaggcacaatgagttggaagttggtatatgc |
9772984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 9570092 - 9570057
Alignment:
| Q |
122 |
ttagacataccttcattttgactcttttcttaatttg |
158 |
Q |
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| T |
9570092 |
ttagacataccttcattttgactc-tttcttaatttg |
9570057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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