View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5106_low_2 (Length: 582)
Name: NF5106_low_2
Description: NF5106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5106_low_2 |
 | |
|
| [»] scaffold0415 (2 HSPs) |
| | |
|
| [»] scaffold0559 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 19 - 578
Target Start/End: Original strand, 40811361 - 40811918
Alignment:
| Q |
19 |
ttcaaagcctagtatctttgctacgtgttgtattcattcccgttgacnnnnnnntatgaacttagatgtttggattcatggtgagaatgatagaatcata |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40811361 |
ttcaaagcctggtatctttgctacgtgttgtattcattcccattgacaaaaaaatatgaacttagatgtttggattcatggtgagaatgatagaatcata |
40811460 |
T |
|
| Q |
119 |
gcaaatcatgacgaatttgactgaactacactttggagcacaagacaatataattttactaaactcaccgtgaatccatacataccttaaaagtttcata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40811461 |
gcaaatcatgacgaatttgactgaactacactttggagcacaagacaatataattttactaaactcaccgtgaatccatacataccataaaagtttcata |
40811560 |
T |
|
| Q |
219 |
aaagagaaatctggaaactcaaattcttatttccttgtaacaatcttaactcaaattttaacgcaaaccaaagatcaaatatataattaattctatcttt |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40811561 |
aaagagaaatctggagactcaaattcttatttccttgtaacaatcttaactcaaattttaacgcaaaccaaagatcaaatatataattaattctatcttt |
40811660 |
T |
|
| Q |
319 |
tttctttgtataca--atatatatgtgtacttgtacatatctctataattacagttcctgatgatgctcagtnnnnnnnnnnnnnnnngatcctgatgaa |
416 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40811661 |
tttctttgtatacaatatatatatgtgtacttgtacatatctctataattacagttcctgatgatgctcagt----aaaaaaaaagaagatcctgatgaa |
40811756 |
T |
|
| Q |
417 |
gctcatgatctttttatacaaactgagctaaacactagttgcaaaactttacaagacatcagacgatggaaaaagtgtagaaaagcgaaaagtttgccca |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40811757 |
gctcatgatctttttatacaaactgagctaaacactagttgcaaaactttacaagacatcagacgatggaaaaagtgtagaaaagcaaaaagtttgccca |
40811856 |
T |
|
| Q |
517 |
atcagggccttaaaatgaattgaattgtgcataaaaatctcttagtatgaagtataatctac |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40811857 |
atcagggccttaaaatgaattgaattgtgcataaaaatctcttagtatgaaatataatctac |
40811918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 266 - 536
Target Start/End: Original strand, 40816775 - 40817054
Alignment:
| Q |
266 |
aactcaaattttaacgcaaaccaaagatcaaatatataattaattctatcttt-tttctttgtatacaatatatatgtgtacttgtacatatctctataa |
364 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||| ||| |||||||||||| ||| |||||||| ||||||||||||||| ||| | |||||| |||| ||| |
|
|
| T |
40816775 |
aactcaaattttaatgtaaaccaaagataaaaaatacaattaattctatatttatttctttgcatacaatatatatgtttacatatacatacctctctaa |
40816874 |
T |
|
| Q |
365 |
ttacagttcctgatgatgctcagtnnnnnnnnnnnnnnnngatcctgatga----agctcatgatctttttatacaaactgagctaaacactagttgcaa |
460 |
Q |
| |
|
|||||| ||||||||| |||||| |||| |||||| ||||||||||||||||||| ||||||||||||||||||||| | | |
|
|
| T |
40816875 |
ttacagatcctgatgaaactcagt-----gaaaaaaaaaagatcttgatgaagctagctcatgatctttttatataaactgagctaaacactagttacta |
40816969 |
T |
|
| Q |
461 |
aac---------tttacaagacatcagacgatggaaaaagtgtagaaaagcgaaaagtttgcccaatcagggccttaaaatgaat |
536 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||| ||||| |||||||| |
|
|
| T |
40816970 |
aactttacaaaatttacaagacatcaaacgatggaaaaagtgtacaaaagcgaaaagttttctgaatcagagccttcaaatgaat |
40817054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 266 - 538
Target Start/End: Original strand, 40804799 - 40805070
Alignment:
| Q |
266 |
aactcaaattttaacgcaaaccaaagatcaaatatataattaattctatcttttttctttgtatacaatatatatgtgta--cttgtacatatctctata |
363 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| | ||||| ||||||||||| |||| | | |||||||||| || |
|
|
| T |
40804799 |
aactcaaattttaac-caaaccaaagattaaaaatataattaattctatcttttt-cattgtaaacaatatatatatgtatacataaacatatctctcta |
40804896 |
T |
|
| Q |
364 |
attacagttcctgatgatgctcagtnnnnnnnnnnnnnnnngatcctgatgaagctcatgatctttttatacaaactga-gctaaacactagttgcaaaa |
462 |
Q |
| |
|
|||||| |||||||| |||||||| |||| ||||||||||| |||||||||||||||||| | || |||||||| || ||||| |
|
|
| T |
40804897 |
attacatatcctgatgttgctcagtgaaaataaaaaaaaat-atcccgatgaagctcacgatctttttatacaaacttaagccaaacactaattacaaaa |
40804995 |
T |
|
| Q |
463 |
ctttacaagacatcagacgatggaaaaagtgtagaaaagcgaaaagtttgcccaatcagggccttaaaatgaattg |
538 |
Q |
| |
|
||| |||||||| || || |||||||||||||| ||||||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
40804996 |
ctt-acaagacagcaaacaatggaaaaagtgtacaaaagcgaaaagtttttgaaataagggccttcaaatgaattg |
40805070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 334 - 388
Target Start/End: Original strand, 40806612 - 40806666
Alignment:
| Q |
334 |
tatatatgtgtacttgtacatatctctataattacagttcctgatgatgctcagt |
388 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
40806612 |
tatatatgtgtacatgtacatatctctctaattacagatcctgatgatgctcagt |
40806666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 455
Target Start/End: Original strand, 40806677 - 40806727
Alignment:
| Q |
405 |
gatcctgatgaagctcatgatctttttatacaaactgagctaaacactagt |
455 |
Q |
| |
|
||||| | ||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
40806677 |
gatccaggtgaagctcatgatctttttatgcaaactgagctaaatactagt |
40806727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 467
Target Start/End: Original strand, 40825447 - 40825509
Alignment:
| Q |
405 |
gatcctgatgaagctcatgatctttttatacaaactgagctaaacactagttgcaaaacttta |
467 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||||||||||| ||| |||| | |||||||||| |
|
|
| T |
40825447 |
gatcttgatgaagttcatgatctttttacacaaactgagccaaatactaatcacaaaacttta |
40825509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 416 - 536
Target Start/End: Complemental strand, 15439 - 15310
Alignment:
| Q |
416 |
agctcatgatctttttatacaaactgagctaaacactagttgcaaaactttacaa---------gacatcagacgatggaaaaagtgtagaaaagcgaaa |
506 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
15439 |
agctcatgatctttttatataaactgagctaaacactagttactaaactttacaaaatttacaagacatcaaacgatggaaaaagtgtacaaaagcgaaa |
15340 |
T |
|
| Q |
507 |
agtttgcccaatcagggccttaaaatgaat |
536 |
Q |
| |
|
||||| | |||||| ||||| |||||||| |
|
|
| T |
15339 |
agttttctgaatcagagccttcaaatgaat |
15310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 15552 - 15466
Alignment:
| Q |
303 |
aattaattctatcttt-tttctttgtatacaatatatatgtgtacttgtacatatctctataattacagttcctgatgatgctcagt |
388 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||||||||||| ||| | |||||| |||| ||||||||| ||||||||| |||||| |
|
|
| T |
15552 |
aattaattctatatttatttctttgcatacaatatatatgtttacatatacatacctctctaattacagatcctgatgaaactcagt |
15466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 334 - 388
Target Start/End: Complemental strand, 8022 - 7968
Alignment:
| Q |
334 |
tatatatgtgtacttgtacatatctctataattacagttcctgatgatgctcagt |
388 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
8022 |
tatatatgtgtacatgtacatatctctctaattacagatcctgatgatgctcagt |
7968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University