View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5106_low_20 (Length: 235)
Name: NF5106_low_20
Description: NF5106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5106_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 30 - 224
Target Start/End: Complemental strand, 44623914 - 44623720
Alignment:
| Q |
30 |
tttcactcgacctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcg |
129 |
Q |
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||||||| || ||||||||||||| |||| ||| ||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44623914 |
tttcacttgaactttaaattcctcttcttttgattggaactccatcactcttatttcgaattccttttcttttgattcaaactccttttgtcgtctctcg |
44623815 |
T |
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| Q |
130 |
aaattcgttttttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaaactcatttacttgaccatcaagtatattctt |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44623814 |
aaattcgttttttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaaactcatttacttgaccatcaagtatattctt |
44623720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 44614755 - 44614563
Alignment:
| Q |
1 |
tcaaattcctctacctttgcttcaaacattttcactcgacctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttctt |
100 |
Q |
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| T |
44614755 |
tcaaattcctctacctttgtttcaaacattttcactcgacctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttctt |
44614656 |
T |
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| Q |
101 |
ttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaa |
193 |
Q |
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| T |
44614655 |
ttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtcctccaccaggccttcaaattcacccttttcagactcaa |
44614563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 39473637 - 39473743
Alignment:
| Q |
43 |
ttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgtttttt |
142 |
Q |
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| T |
39473637 |
ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttctttt |
39473736 |
T |
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| Q |
143 |
ctgattc |
149 |
Q |
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||||||| |
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| T |
39473737 |
ctgattc |
39473743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 214
Target Start/End: Complemental strand, 39459064 - 39458917
Alignment:
| Q |
67 |
aactccttcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggc |
166 |
Q |
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|||||||||||| || |||||||| ||||||||||||||| | |||||| | | |||||||||| | | ||||||||||| || ||| ||| ||| |
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| T |
39459064 |
aactccttcacttgtccttcaaattgcttttcttttgattcgagctccttcagcctgctctcgaaatgcttcttttctgattccaactccttcacccggc |
39458965 |
T |
|
| Q |
167 |
cttccaattcaccctttttagattcaaactcatttacttgaccatcaa |
214 |
Q |
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|||| |||||| ||| ||| ||||||| ||| ||| || ||||||||| |
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| T |
39458964 |
cttcaaattcatcctcttttgattcaatctcctttgctcgaccatcaa |
39458917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 39215457 - 39215415
Alignment:
| Q |
33 |
cactcgacctttaaattcctcctcttctgactggaactccttc |
75 |
Q |
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|||| |||||||||||||||||| || |||||||||||||||| |
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| T |
39215457 |
cacttgacctttaaattcctcctgttttgactggaactccttc |
39215415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 39390708 - 39390741
Alignment:
| Q |
84 |
ttcaaattccttttcttttgattcaaactccttt |
117 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
39390708 |
ttcaaattccttctcttttgattcaaactccttt |
39390741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 84 - 224
Target Start/End: Complemental strand, 40347507 - 40347367
Alignment:
| Q |
84 |
ttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcacccttt |
183 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| || | ||| |||||||||||| |
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| T |
40347507 |
ttcaaactccttttcttttgattcaaactccttttgtcggctctcgaaattcaatttttctgattcaaagtccttcatcagccattcaaattcacccttt |
40347408 |
T |
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| Q |
184 |
ttagattcaaactcatttacttgaccatcaagtatattctt |
224 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40347407 |
ttagattcaaactcatttactcgaccatcaagtatattctt |
40347367 |
T |
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