View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5106_low_3 (Length: 554)
Name: NF5106_low_3
Description: NF5106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5106_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 15 - 538
Target Start/End: Original strand, 31696006 - 31696530
Alignment:
| Q |
15 |
atcattggaatcaagcaagagtttgggattggatggttgatgttgcaccttgaagaccatgttcccggatgcattggtgaactctagggtgccacgtgga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31696006 |
atcattggaatcaagcaagagtttgggattgggtggttgatgttgcaccttgaagaccatgttcccggatgcattggtgaactctagggtgccacgtgga |
31696105 |
T |
|
| Q |
115 |
atttgggcgtcttctttggaacagaagagatcgattgggatgtgttcatcttctgtgcctgtatattcccaatcttctgaagtttccatttccatttttg |
214 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31696106 |
actcgggcgtcttctttggaacagaagagatcgattgggatgtgttcatcttctgtgcctgtatattcccaatcttctgaagtttccatttccatttttg |
31696205 |
T |
|
| Q |
215 |
ttaattgttttctatttctcttaacagatttaatccatcactgtaaataataatttactgcaatgtcgattcagatgtggtat-cccaatctaagtcaat |
313 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31696206 |
ttaattgttttctattcctcttaacagatttaatccatcagtgtaaataataatttactgcaatgtcgattcagatgtggtatccccaatctaagtcaat |
31696305 |
T |
|
| Q |
314 |
atcaccgggccaaccaagtgagttgagatcgttggtaaaaatgagaattgttcgatcttaattttttaattgcgtaatataaaaacaagaatagttaagt |
413 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| | |
|
|
| T |
31696306 |
atcatcgggccaaccaagtgagatgagatcgtttgtaaaaatgagaatcgttcgatcttaattttttaattgcgtaatatacaaatgagaatagttaatt |
31696405 |
T |
|
| Q |
414 |
ttttagccgttcgatcttaaatggatcaccaatatttaatggattggatgagattggttatgcacagaattaaaatgtttcaaatgaccaactatatcac |
513 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31696406 |
ttttagccgttccatcttaaatggatcaccaatatttaatggattggatgagattggttatgcacagaattaaaatgtttcaaatgaccaactatatcac |
31696505 |
T |
|
| Q |
514 |
aaaattaaaaacaagaccaccttat |
538 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
31696506 |
aaaattaaaaacaagaccaccttat |
31696530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 37 - 205
Target Start/End: Original strand, 31689861 - 31690026
Alignment:
| Q |
37 |
ttgggattggatggttgatgttgcaccttgaagaccatgttcccggatgcattggtgaactctagggtgccacgtggaatttgggcgtcttctttggaac |
136 |
Q |
| |
|
||||||| || ||||||| | |||||||||||||| |||||||| ||||||| || ||| ||||| |||||||||||| | ||||| || |||||||| |
|
|
| T |
31689861 |
ttgggatcgggtggttgacggtgcaccttgaagactatgttccccgatgcatctgtaaacgctaggatgccacgtggaactccggcgtgttttttggaac |
31689960 |
T |
|
| Q |
137 |
agaagagatcgattgggatgtgttcatcttctgtgcctgtatattcccaatcttctgaagtttccattt |
205 |
Q |
| |
|
||| ||||||||||||||||||| |||||| |||||||| || ||| || |||||||||||||||| |
|
|
| T |
31689961 |
cgaaaagatcgattgggatgtgttgatcttcggtgcctgtgtactccaaa---tctgaagtttccattt |
31690026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University