View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5106_low_5 (Length: 502)
Name: NF5106_low_5
Description: NF5106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5106_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 125 - 497
Target Start/End: Complemental strand, 23667243 - 23666870
Alignment:
| Q |
125 |
caaaggaataataacgtccttataattttgatactacatattatggattaatacaaaactatagaggttgaaggttgaacgattatgattaaaaaacact |
224 |
Q |
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| T |
23667243 |
caaaggaataataacgtccttataattttgatactccatattatggattaatacaaaactatagaggttgaaggttgaacgattatgattaaaaaacact |
23667144 |
T |
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| Q |
225 |
gttgaaaggggt-tgtaacagttgaacagttcacatatccatgaaagtagaacatgcatgaatttctgagcctcattttcgtaccatatattatagcttc |
323 |
Q |
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| T |
23667143 |
gttgaaaggggtatgtaacagttgaacagttcacatatccatgaaagtagaacatgcatgaatttctgagcctcattttcgtaccatatattatagcttc |
23667044 |
T |
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| Q |
324 |
tgcaaaattagcccacactgctgtgttatttacttgcttctttttgctttatctttcgatatgtttcttctttgagacccacacacaccgacatttttgg |
423 |
Q |
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| T |
23667043 |
tgcaaaattagcccacactgctgtgttatttacttgcttctttttgctttatctttcgatatgtttcttctttgagacccacacacaccgacatttttgg |
23666944 |
T |
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| Q |
424 |
aatctgaggtaactatttactgcctacgtagtacaaagacacggagaggagagatagcttttgtctgtgctgct |
497 |
Q |
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| T |
23666943 |
aatctgaggtaactatttactgcctacgtagtacaaagacacggagaggagagatagcttttgtctgtgttgct |
23666870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23667367 - 23667314
Alignment:
| Q |
1 |
tataaggttggtaacggtctctggcattaatggttgtataggtccccactcttg |
54 |
Q |
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| T |
23667367 |
tataaagttggtaacggtctctggcattaatggttgtataggtccccactcttg |
23667314 |
T |
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