View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5106_low_7 (Length: 485)
Name: NF5106_low_7
Description: NF5106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5106_low_7 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 39 - 467
Target Start/End: Complemental strand, 31106997 - 31106569
Alignment:
| Q |
39 |
tgaagaacacaaagtaattggttccaaacggttacactaatatgaagtatagatatagactaatattattttataggtaaactttggtgtatgattttaa |
138 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31106997 |
tgaagaacacaaagtaataggttccaaacggttacactaatatgaagtatagatatagactaatattattttataggtaaactttggtgtatgattttaa |
31106898 |
T |
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| Q |
139 |
gtattcatcgatgtgggactcaagaagagtgctacaaggtggttataacttctttctcctactcgctcgnnnnnnnctccaagatatttattcttcattc |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31106897 |
gtattcatcgatgtgggactcaagaagagtgctacaaggtggttataacttctttctcctactcgctcgtttttttctccaagatatttattcttcattc |
31106798 |
T |
|
| Q |
239 |
tcaattcagttatcttttcttagtattattatcatctcaatggtgggtcccaattggatgaagatgtttatatattttcattatcccattaaccttttta |
338 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31106797 |
tcaattcagttatcttttcctagtattattatcatctcaatggtgggtcccaattggatgaagatgcttatatattttcattatcccattaaccttttta |
31106698 |
T |
|
| Q |
339 |
tctccaaacagatccaaagtttcttgttgtttataggtcttcgtatgctgagaatttgcatgttattttttagaccttatattaagaagacgtctgagag |
438 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
31106697 |
tctcaaaacagatccaaagtttcttgttgtttataggtattcgtatgctgagaatttgtatattattttttagaccttatattaagaagacgtctgagag |
31106598 |
T |
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| Q |
439 |
gaatttcaacaccagtgcacctcttatgt |
467 |
Q |
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| T |
31106597 |
gaatttcaacaccagtgcacctcttatgt |
31106569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 31050702 - 31050641
Alignment:
| Q |
239 |
tcaattcagttatcttttcttagtattattatcatctcaatggtgggtcccaattggatgaagat |
303 |
Q |
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|||||||| || |||||||||||||||||||| |||||||||||| |||| |||||||||||| |
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| T |
31050702 |
tcaattcaattctcttttcttagtattattattatctcaatggtgtgtcc---ttggatgaagat |
31050641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 3282 - 3355
Alignment:
| Q |
239 |
tcaattcagttatcttttcttag---tattattatcatctcaatggtgggtcccaattggatgaagatgtttatata |
312 |
Q |
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|||||||| || ||||||||||| ||||||||| ||||||||||||| ||| ||||||||||||| ||||||| |
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| T |
3282 |
tcaattcaattctcttttcttagtattattattattatctcaatggtggctcc---ttggatgaagatgcttatata |
3355 |
T |
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