View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5106_low_9 (Length: 424)
Name: NF5106_low_9
Description: NF5106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5106_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 30440499 - 30440710
Alignment:
| Q |
18 |
agaatagagttacaagttaattagagtgaatatactttaacttgaatgcattaaagaacttacgaatataatcttctagatcttctggataaatttctct |
117 |
Q |
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| T |
30440499 |
agaatagagtgacaagttaatcacaatgaatatattttaacttgaatgcattaaagaacttacgaatataattttctagat---------aaatttctct |
30440589 |
T |
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| Q |
118 |
atctaggagatctttaatagtgaattctgccatttgatctaacaaagcgacaacagctttttcatacttcaaaagcagagcgaagacatatcctatcata |
217 |
Q |
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| T |
30440590 |
atctaggagatctttaatagt-----ctgccatttgatctaacaaagcgacagcagctttttcatacttcaaaagcagagcgaagtcatatcctatcatg |
30440684 |
T |
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| Q |
218 |
gatgcgagctcatcgttccaataaaa |
243 |
Q |
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| T |
30440685 |
gatgcgagctcatcgttccaataaaa |
30440710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 293 - 413
Target Start/End: Original strand, 30440712 - 30440832
Alignment:
| Q |
293 |
ggacaacctcatacgcgaaataaactctttttccaaaatttatagttagagcgaaagagaggaaaaaacctttgtctgggtgcgctataatagacaccca |
392 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
30440712 |
ggacaacctcatacgcgaaataaactctttttccaagatttatagttagagcgaaagagaggaaaaaacctttgtctgggtgcgctgtgatagacaccca |
30440811 |
T |
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| Q |
393 |
ggtccctttatctaccccttt |
413 |
Q |
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| T |
30440812 |
ggtccctttatctaccccttt |
30440832 |
T |
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