View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5107-Insertion-1 (Length: 795)

Name: NF5107-Insertion-1
Description: NF5107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5107-Insertion-1
NF5107-Insertion-1
[»] chr3 (1 HSPs)
chr3 (7-779)||(1154060-1154833)
[»] chr7 (1 HSPs)
chr7 (219-571)||(29622475-29622827)
[»] chr5 (15 HSPs)
chr5 (225-589)||(35371076-35371440)
chr5 (251-581)||(35411242-35411572)
chr5 (195-581)||(35386596-35386982)
chr5 (251-556)||(35426021-35426326)
chr5 (372-556)||(35377062-35377246)
chr5 (368-567)||(35367462-35367661)
chr5 (251-581)||(35755427-35755757)
chr5 (195-364)||(23935846-23936012)
chr5 (732-795)||(35386372-35386435)
chr5 (734-795)||(35376772-35376833)
chr5 (734-795)||(35424031-35424092)
chr5 (733-795)||(35411033-35411095)
chr5 (734-795)||(35755174-35755235)
chr5 (734-795)||(35367220-35367281)
chr5 (262-334)||(35367680-35367752)
[»] chr1 (4 HSPs)
chr1 (252-579)||(10414954-10415281)
chr1 (653-795)||(10415370-10415517)
chr1 (305-567)||(10419893-10420155)
chr1 (734-795)||(10409759-10409820)
[»] chr2 (6 HSPs)
chr2 (210-557)||(30626650-30626997)
chr2 (210-424)||(30663709-30663923)
chr2 (210-424)||(30672389-30672603)
chr2 (354-418)||(28160440-28160504)
chr2 (480-557)||(30663603-30663680)
chr2 (480-557)||(30672283-30672360)
[»] chr8 (5 HSPs)
chr8 (408-543)||(15294352-15294487)
chr8 (408-543)||(15474721-15474856)
chr8 (734-792)||(15294112-15294170)
chr8 (734-792)||(15474481-15474539)
chr8 (389-511)||(13564902-13565024)


Alignment Details
Target: chr3 (Bit Score: 718; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 7 - 779
Target Start/End: Complemental strand, 1154833 - 1154060
Alignment:
Q  7 actttcttggcgttg-aagtaattcaaaatactgatggcattttccattagtcaaaaaagatatgtgatggaagtattggaaagatttggaatggacaaa 105  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1154833 actttcttggcgttggaagtaattcaaaagactgatggcatttttcattagtcaaaaaagatatgtgatggaagtattggagagatttggaatggacaaa 1154734  T
Q  106 agcaattctgtccactatccaactgctcttggacagaagcttcgaaaggatcatgatggcatgaagattgatagtacttactaaacatcttttcttatca 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1154733 agcaattctgtccactatccaactgctcttggacagaagcttcgaaaggatcatgatggcatgaagattgatagtacttactaaacatcttttcttatca 1154634  T
Q  206 caatagcaatggttcctagcatggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagta 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  1154633 caatagcaatggttcctagcatggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcgatgagcaggaaactcttcagta 1154534  T
Q  306 catgcaactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggt 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  1154533 catgcaactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaatttctgtctgatcttcgacaaacggcataagcaaacgttggt 1154434  T
Q  406 cgactatctcaaggattccttcagaaattttcattttacaaaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctctttccggtgag 505  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1154433 cgactatctcaaggattccttcagaaattttcattttacaaaactcgtataggcttaaattctcacaaaatatactattggttggtctctttccggtgag 1154334  T
Q  506 catctctaacagaagaatcccaaaactgtagatatctccctgtggtgatactggaacacctgttccgtactctttttcagacaaaaactacaactattta 605  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1154333 catctctaacagaagaatcccaaagctgtagatatctccctgtggtgatactggaacacctgttccgtactctttttcagacaaaaactacaactattta 1154234  T
Q  606 ggggaggaataatgaaggagtatattgtgtgtatacgtatatatatcacattgatggtcataactaatttaaataataataaattagcaatgctaaattt 705  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1154233 ggggaggaataatgaaggagtatattgtgtgtatatgtatatatatcacattgatggtcataactaatttaaataataataaattagcaatgccaaattt 1154134  T
Q  706 ctgaaagatagtaactattaatggatttaagaactttaccaggaggaatatatcctattgttcctttaattgta 779  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1154133 ctgaaagatagtaactattaatggatttaagaactttaccaggaggaatatatcctattgttcctttaattgta 1154060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 219 - 571
Target Start/End: Original strand, 29622475 - 29622827
Alignment:
Q  219 tcctagcatggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatgcaactccaa 318  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| | ||||| ||||||||||||| ||| || ||||||||||||||    
T  29622475 tcctagcatggaaactttgatttgatttcattcaacttaactataacatcttttattagcattcgatgagcaggaaactcttgagaacatgcaactccaa 29622574  T
Q  319 ttctagcaaacatcaccaaacactttttaatcttgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgactatctcaag 418  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||| |||||| |||||||  |||| |  ||||| |||||    || |||||||||||    
T  29622575 ttctagcaaacatcaccaaacaattcctaatcttgttttccacaatccctgtccgatcttcagcaaatggtataagtaaacgggaatccactatctcaag 29622674  T
Q  419 gattccttcagaaattttcattttacaaaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctctttccggtgagcatctctaacaga 518  Q
     |||||||| | ||| ||||| ||||| || | |||||||||||||||||||||||| ||  |||  | |||||||||||| ||||||||||||||||||    
T  29622675 aattccttctggaatcttcatcttacagaatttgtgtaggcttaaattctcacaaaacatgttatctgctggtctctttccagtgagcatctctaacaga 29622774  T
Q  519 agaatcccaaaactgtagatatctccctgtggtgatactggaacacctgttcc 571  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  29622775 agaatgccaaagctgtagatatctccctgtggtgatactggaacacctgttcc 29622827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 2e-85; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 225 - 589
Target Start/End: Complemental strand, 35371440 - 35371076
Alignment:
Q  225 catggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatgcaactccaattctag 324  Q
    ||||||| | ||||||||||||||||||| ||| | ||| ||| |||||||||||||| |||||||||| || |||||| ||||||||||||||||  ||    
T  35371440 catggaaacattgatttgatttcattcaaattagctatagcatcttttatcaacattcgatgagcaggagactcttcagaacatgcaactccaattgcag 35371341  T
Q  325 caaacatcaccaaacactttttaatcttgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgactatctcaaggattcc 424  Q
    |||||||||||||||| ||  ||||||||||||||||||| ||||| | ||||||  |||| |  | ||||||| ||   || |||||||||||||||||    
T  35371340 caaacatcaccaaacaattcctaatcttgttttccacaatccctgtatcatcttcagcaaatggtaaaagcaaatgtgaatctactatctcaaggattcc 35371241  T
Q  425 ttcagaaattttcattttacaaaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctctttccggtgagcatctctaacagaagaatc 524  Q
    ||| | |||||||||||| || || || || || |||| | ||||| |||| ||  |||  |||||||||||||||||||||||||||||||||||||||    
T  35371240 ttctggaattttcattttgcagaattcatgcagacttagactctcagaaaacatgttatctgttggtctctttccggtgagcatctctaacagaagaatc 35371141  T
Q  525 ccaaaactgtagatatctccctgtggtgatactggaacacctgttccgtactctttttcagacaa 589  Q
    ||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||    
T  35371140 ccaaagctatagatatctccatgtggtgatactggaacacctgtcccgtactctttttcaaacaa 35371076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 251 - 581
Target Start/End: Complemental strand, 35411572 - 35411242
Alignment:
Q  251 caacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatgcaactccaattctagcaaacatcaccaaacactttttaatc 350  Q
    ||||||||| ||||||| |||||||||||||| ||||||||||||| | ||||  ||||||||||| ||||||||||||||||||||||| ||  |||||    
T  35411572 caacttaacgataacatcttttatcaacattcgatgagcaggaaactcgtcagagcatgcaactccgattctagcaaacatcaccaaacaattcctaatc 35411473  T
Q  351 ttgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgactatctcaaggattccttcagaaattttcattttacaaaaat 450  Q
    |||||||||||||| ||||||| ||||||  |||| |  | ||||||| ||   || |||||||||||||||||||| |||||||||||||| || || |    
T  35411472 ttgttttccacaatccctgtctcatcttcagcaaatggtaaaagcaaatgtgaatctactatctcaaggattccttctgaaattttcattttgcagaatt 35411373  T
Q  451 cgtgtaggcttaaattctcacaaaatatactattggttggtctctttccggtgagcatctctaacagaagaatcccaaaactgtagatatctccctgtgg 550  Q
    | ||||| |||| | ||||| ||||  |  |||| |||||||||||| | |||| ||||||||  |||||||||||||| ||||||||||||||| ||||    
T  35411372 catgtagacttagactctcagaaaagttgttatttgttggtctctttgcagtgaacatctctagtagaagaatcccaaagctgtagatatctccccgtgg 35411273  T
Q  551 tgatactggaacacctgttccgtactctttt 581  Q
    ||||||||||||||||  |||||||||||||    
T  35411272 tgatactggaacaccttctccgtactctttt 35411242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 195 - 581
Target Start/End: Complemental strand, 35386982 - 35386596
Alignment:
Q  195 ttttcttatcacaatagcaatggttcctagcatggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcaatgagcaggaa 294  Q
    ||||||||||||| |||||  |||||||||||||||| |||||||||||||| |||||||||||| ||||||| |||||||||||||| ||||| ||  |    
T  35386982 ttttcttatcacagtagcagcggttcctagcatggaaactttgatttgatttgattcaacttaactataacatcttttatcaacattcgatgagtagtga 35386883  T
Q  295 acccttcagtacatgcaactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaattcctgtctgatcttcgacaaacgacataag 394  Q
     | ||| || |||||| |||||||||  |||||||||||||||||| ||  ||||||||||||||||||| ||  ||| ||||||  |||| |  | |||    
T  35386882 cctctttagaacatgcgactccaattgcagcaaacatcaccaaacaattcctaatcttgttttccacaatccccatctcatcttcagcaaatggaaaaag 35386783  T
Q  395 caaacgttggtcgactatctcaaggattccttcagaaattttcattttacaaaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctc 494  Q
    |||  |    || ||||||||||||||| |||| | |||||| ||||| || || |  || || |||||  ||||| ||||  |  |||| |||||||||    
T  35386782 caattgagaatctactatctcaaggattgcttctggaatttttattttgcagaatttatgcagacttaatctctcagaaaagttgttatttgttggtctc 35386683  T
Q  495 tttccggtgagcatctctaacagaagaatcccaaaactgtagatatctccctgtggtgatactggaacacctgttccgtactctttt 581  Q
    |||||||||| ||||||||  |||||||||||||| |||||||||||||||| |||||||||||||||||||  |||||||||||||    
T  35386682 tttccggtgaacatctctagtagaagaatcccaaagctgtagatatctccctttggtgatactggaacaccttctccgtactctttt 35386596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 251 - 556
Target Start/End: Complemental strand, 35426326 - 35426021
Alignment:
Q  251 caacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatgcaactccaattctagcaaacatcaccaaacactttttaatc 350  Q
    ||||||||| ||||||| |||| | | |||||  |||| ||||||  |||||| |||||||| ||| ||| ||||||||||||| |||||||  || ||     
T  35426326 caacttaactataacatcttttgtgagcattctctgagtaggaaattcttcagaacatgcaattcctattttagcaaacatcactaaacactcctttatg 35426227  T
Q  351 ttgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgactatctcaaggattccttcagaaattttcattttacaaaaat 450  Q
    |||||||||| || |  ||| ||||||||  |||| ||||||||||| | |   || ||||  ||||| |||||||||| |||| |||| ||||| || |    
T  35426226 ttgttttccataacttgtgtttgatcttcagcaaatgacataagcaagcatgaatccactacatcaagaattccttcaggaattctcatcttacagaatt 35426127  T
Q  451 cgtgtaggcttaaattctcacaaaatatactattggttggtctctttccggtgagcatctctaacagaagaatcccaaaactgtagatatctccctgtgg 550  Q
     |||||  |||||||||||| |||| ||  |||  |||||||||||||| || |||||||||||||||| ||| ||| | || |||||||||||||||||    
T  35426126 tgtgtaaacttaaattctcataaaacatgttatctgttggtctctttccagtaagcatctctaacagaacaattccatagctatagatatctccctgtgg 35426027  T
Q  551 tgatac 556  Q
    ||||||    
T  35426026 tgatac 35426021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 372 - 556
Target Start/End: Complemental strand, 35377246 - 35377062
Alignment:
Q  372 tgatcttcgacaaacgacataagcaaacgttggtcgactatctcaaggattccttcagaaattttcattttacaaaaatcgtgtaggcttaaattctcac 471  Q
    |||||||| ||||| |||| |||||| | | | || ||||| ||||| |||||||| | ||||||||| |||||||| | ||||| ||||| ||||||||    
T  35377246 tgatcttcaacaaatgacacaagcaagcatggatccactatatcaagaattccttctggaattttcatcttacaaaatttgtgtaagcttagattctcac 35377147  T
Q  472 aaaatatactattggttggtctctttccggtgagcatctctaacagaagaatcccaaaactgtagatatctccctgtggtgatac 556  Q
    |||| ||  |||  |||||||||||||| || |||||||||||||||||||| ||| | || |||||||||||||||||||||||    
T  35377146 aaaagatgttatctgttggtctctttccagtaagcatctctaacagaagaattccatagctatagatatctccctgtggtgatac 35377062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 368 - 567
Target Start/End: Complemental strand, 35367661 - 35367462
Alignment:
Q  368 tgtctgatcttcgacaaacgacataagcaaacgttggtcgactatctcaaggattccttcagaaattttcattttacaaaaatcgtgtaggcttaaattc 467  Q
    |||||||||||  | ||| | |||||||||| ||   || ||||||||||| ||| || | | ||||||||| ||||| || | ||| ||||| | ||||    
T  35367661 tgtctgatctttaagaaatggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattc 35367562  T
Q  468 tcacaaaatatactattggttggtctctttccggtgagcatctctaacagaagaatcccaaaactgtagatatctccctgtggtgatactggaacacctg 567  Q
    || ||||| || ||||  |||||||||||||| ||||||||||||||||| ||||||||||| ||||| | |||||||||||| ||||||||||||||||    
T  35367561 tcgcaaaacatgctatctgttggtctctttccagtgagcatctctaacagtagaatcccaaagctgtaaacatctccctgtggagatactggaacacctg 35367462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 251 - 581
Target Start/End: Complemental strand, 35755757 - 35755427
Alignment:
Q  251 caacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatgcaactccaattctagcaaacatcaccaaacactttttaatc 350  Q
    ||||||||  ||||||| |||| | | |||||  |||| ||||||  |||||| |||||||||||| ||| ||||||||||||| | |||||  || ||     
T  35755757 caacttaattataacatcttttgtgagcattctctgagtaggaaattcttcagaacatgcaactcctattttagcaaacatcactagacactcctttatg 35755658  T
Q  351 ttgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgactatctcaaggattccttcagaaattttcattttacaaaaat 450  Q
    ||||||||||||| || |||||||||||| || || |  |||||  ||||    || || | |||||| ||| |||||| |||| |||| ||||| || |    
T  35755657 ttgttttccacaactcgtgtctgatcttcaaccaatggaataaggcaacgggaatctacaacctcaagaatttcttcaggaattctcatcttacagaatt 35755558  T
Q  451 cgtgtaggcttaaattctcacaaaatatactattggttggtctctttccggtgagcatctctaacagaagaatcccaaaactgtagatatctccctgtgg 550  Q
     ||||||  ||| ||||||| |||| ||  |||  ||||||||||||||||| ||||| || ||||| ||||||||| | ||||| ||||||||||  ||    
T  35755557 tgtgtagagttagattctcataaaacatgttatctgttggtctctttccggtaagcatttccaacagcagaatcccatagctgtaaatatctccctccgg 35755458  T
Q  551 tgatactggaacacctgttccgtactctttt 581  Q
    |||||| ||| |||||| ||| |||||||||    
T  35755457 tgataccggaccacctgctccatactctttt 35755427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 195 - 364
Target Start/End: Original strand, 23935846 - 23936012
Alignment:
Q  195 ttttcttatcacaatagcaatggttcctagcatggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcaatgagcaggaa 294  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||||||| |||||| ||||||||||  |||||| ||||||   ||||   |||||| |      
T  23935846 ttttcttatcacagtagcaattgttcctagcatggaaactttgattttatttcactcaacttaactgtaacatcttttatggccatttgttgagcaaggg 23935945  T
Q  295 acccttcagtacatgcaactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaat 364  Q
     | |||    | |||||||| ||||||||||||||||||||||| || |  |||||||||||||||||||    
T  23935946 gcactt---aaaatgcaacttcaattctagcaaacatcaccaaaaacctcctaatcttgttttccacaat 23936012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 732 - 795
Target Start/End: Complemental strand, 35386435 - 35386372
Alignment:
Q  732 ttaagaactttaccaggaggaatatatcctattgttcctttaattgtagaggaaattacttgat 795  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||    
T  35386435 ttaagaactttaccaggaggaatatatcctatagttcctttaatagtagaggaaataacttgat 35386372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 734 - 795
Target Start/End: Complemental strand, 35376833 - 35376772
Alignment:
Q  734 aagaactttaccaggaggaatatatcctattgttcctttaattgtagaggaaattacttgat 795  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  35376833 aagaactttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgat 35376772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 734 - 795
Target Start/End: Complemental strand, 35424092 - 35424031
Alignment:
Q  734 aagaactttaccaggaggaatatatcctattgttcctttaattgtagaggaaattacttgat 795  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  35424092 aagaactttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgat 35424031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 733 - 795
Target Start/End: Complemental strand, 35411095 - 35411033
Alignment:
Q  733 taagaactttaccaggaggaatatatcctattgttcctttaattgtagaggaaattacttgat 795  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||  |||| |||||||    
T  35411095 taagagctttaccaggaggaatatatcctatagttcctttaattgtagaaaaaataacttgat 35411033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 734 - 795
Target Start/End: Complemental strand, 35755235 - 35755174
Alignment:
Q  734 aagaactttaccaggaggaatatatcctattgttcctttaattgtagaggaaattacttgat 795  Q
    |||||||||||||||||||| ||||||||| ||||| ||||||||||||||| | |||||||    
T  35755235 aagaactttaccaggaggaacatatcctatagttcccttaattgtagaggaattaacttgat 35755174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 734 - 795
Target Start/End: Complemental strand, 35367281 - 35367220
Alignment:
Q  734 aagaactttaccaggaggaatatatcctattgttcctttaattgtagaggaaattacttgat 795  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||| || ||| | |||||||    
T  35367281 aagaactttaccaggaggaacatatcctatagttcccttaattgtggaagaattaacttgat 35367220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 262 - 334
Target Start/End: Complemental strand, 35367752 - 35367680
Alignment:
Q  262 taacatgttttatcaacattcaatgagcaggaaacccttcagtacatgcaactccaattctagcaaacatcac 334  Q
    |||||| |||||||||||||| ||||| ||| ||  |||| | |||||||||||| ||| |||||||||||||    
T  35367752 taacattttttatcaacattcgatgagtagggaattcttcggaacatgcaactcctattttagcaaacatcac 35367680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 4e-68; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 252 - 579
Target Start/End: Original strand, 10414954 - 10415281
Alignment:
Q  252 aacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatgcaactccaattctagcaaacatcaccaaacactttttaatct 351  Q
    |||||| | ||||||| |||||||||||||| ||||| |||||   |||||| |||||||||||| |||  | ||||||||||||||||||| |||||||    
T  10414954 aacttatctataacatcttttatcaacattcgatgagaaggaacttcttcagaacatgcaactccgattgcaccaaacatcaccaaacacttcttaatct 10415053  T
Q  352 tgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgactatctcaaggattccttcagaaattttcattttacaaaaatc 451  Q
    | ||||||||||| || |||| | ||||| |||| | || ||| ||  ||   || |||||||| ||||||||||| | |||||||||||| || || ||    
T  10415054 tattttccacaatccccgtctcaacttcggcaaatggcaaaagtaattgtgaatctactatctcgaggattccttctggaattttcattttgcagaattc 10415153  T
Q  452 gtgtaggcttaaattctcacaaaatatactattggttggtctctttccggtgagcatctctaacagaagaatcccaaaactgtagatatctccctgtggt 551  Q
     ||||| |||  | ||||| |||| ||  |||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  10415154 atgtagactttgactctcagaaaacatgttatttgttggtctctttccagtgagcatctctaacagaagaatcccaaagctatagatatctccctgtggt 10415253  T
Q  552 gatactggaacacctgttccgtactctt 579  Q
    ||||||||||||||||||||||||||||    
T  10415254 gatactggaacacctgttccgtactctt 10415281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 653 - 795
Target Start/End: Original strand, 10415370 - 10415517
Alignment:
Q  653 acattgatggtcataactaatttaaataataataaattagcaatgctaaatttctgaaagatagtaactattaatggat-----ttaagaactttaccag 747  Q
    ||||||| ||||||| || || ||||||| |||||||||||| |||||||||||| || | || |||| |  |||||||     |||||| |||||||||    
T  10415370 acattgagggtcatatctgatataaataacaataaattagcattgctaaatttcttaagggtactaaccaaaaatggatataagttaagagctttaccag 10415469  T
Q  748 gaggaatatatcctattgttcctttaattgtagaggaaattacttgat 795  Q
     ||||||||||||||| ||||||||||| ||||||||||| |||||||    
T  10415470 taggaatatatcctatagttcctttaatagtagaggaaatgacttgat 10415517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 305 - 567
Target Start/End: Original strand, 10419893 - 10420155
Alignment:
Q  305 acatgcaactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttgg 404  Q
    |||||||||||| |||  |||||||||||| | |||||  ||||| || ||||||   |||  |||||||||||    ||| | |||||||||| ||       
T  10419893 acatgcaactcctatttcagcaaacatcactagacactccttaatgtttttttccgtcattagtgtctgatctttaggaaatggcataagcaaatgtgaa 10419992  T
Q  405 tcgactatctcaaggattccttcagaaattttcattttacaaaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctctttccggtga 504  Q
    || ||||||||||| ||| || ||| ||||||||| ||||| || | ||| ||||| | |||||  | ||| ||  |||  |||||||||||||| ||||    
T  10419993 tccactatctcaagaatttctacaggaattttcatcttacagaatttgtgaaggctaagattctggctaaacatgttatctgttggtctctttccagtga 10420092  T
Q  505 gcatctctaacagaagaatcccaaaactgtagatatctccctgtggtgatactggaacacctg 567  Q
    ||||||||||||  ||||||||||| ||||| | ||||||||| || ||||||||||||||||    
T  10420093 gcatctctaacaagagaatcccaaagctgtaaacatctccctggggagatactggaacacctg 10420155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 734 - 795
Target Start/End: Original strand, 10409759 - 10409820
Alignment:
Q  734 aagaactttaccaggaggaatatatcctattgttcctttaattgtagaggaaattacttgat 795  Q
    |||||||||||| ||||||| ||||||||| ||||| ||||||||||||||||| |||||||    
T  10409759 aagaactttaccgggaggaacatatcctatagttcccttaattgtagaggaaataacttgat 10409820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 7e-42; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 210 - 557
Target Start/End: Complemental strand, 30626997 - 30626650
Alignment:
Q  210 agcaatggttcctagcatggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatg 309  Q
    ||||| || ||||||||||||| | ||||||||||||||||||||||  | ||||||| |||||||  ||||| || ||  |||||| |||| | |||||    
T  30626997 agcaacggatcctagcatggaaacattgatttgatttcattcaactttgctataacatcttttatcggcattcgattagatggaaactcttctgaacatg 30626898  T
Q  310 caactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgac 409  Q
    ||||||||||| ||||||||||||| || || ||  ||||||||||||||||||| ||||||| ||||||  |||| | || ||||||| ||   || ||    
T  30626897 caactccaattatagcaaacatcactaagcaattcctaatcttgttttccacaatccctgtctcatcttcagcaaatggcaaaagcaaatgtgaatctac 30626798  T
Q  410 tatctcaaggattccttcagaaattttcattttacaaaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctctttccggtgagcatc 509  Q
    |||||||| |||||| || | || |||||| ||||| ||  | ||||| || | | |  || |||| || ||||| |||||||| ||||| ||||||||     
T  30626797 tatctcaaagattccatctggaactttcatcttacagaatgcatgtagactgagacttccagaaaacatgctatttgttggtctttttccagtgagcatt 30626698  T
Q  510 tctaacagaagaatcccaaaactgtagatatctccctgtggtgatact 557  Q
    ||||| |||||||||||  | ||||||||||| || || |||||||||    
T  30626697 tctaagagaagaatcccgtagctgtagatatcgccatgaggtgatact 30626650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 210 - 424
Target Start/End: Complemental strand, 30663923 - 30663709
Alignment:
Q  210 agcaatggttcctagcatggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatg 309  Q
    ||||| || |||| |||||||| | ||||||||||||||||||||||  | ||||||| |||||||  ||||| || ||  |||||| |||||| |||||    
T  30663923 agcaacggatcctcgcatggaaacattgatttgatttcattcaactttgctataacatcttttatcggcattcgataagatggaaactcttcagaacatg 30663824  T
Q  310 caactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgac 409  Q
    ||||||||||| ||||||||||||| || || ||  ||||||||||||||||||| ||||||| ||||||  |||| | || ||||||| ||   || ||    
T  30663823 caactccaattatagcaaacatcactaagcaattcctaatcttgttttccacaatccctgtctcatcttcagcaaatggcaaaagcaaatgtgaatctac 30663724  T
Q  410 tatctcaaggattcc 424  Q
    |||||||| ||||||    
T  30663723 tatctcaaagattcc 30663709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 210 - 424
Target Start/End: Complemental strand, 30672603 - 30672389
Alignment:
Q  210 agcaatggttcctagcatggaatctttgatttgatttcattcaacttaacaataacatgttttatcaacattcaatgagcaggaaacccttcagtacatg 309  Q
    ||||| || |||| |||||||| | ||||||||||||||||||||||  | ||||||| |||||||  ||||| || ||  |||||| |||||| |||||    
T  30672603 agcaacggatcctcgcatggaaacattgatttgatttcattcaactttgctataacatcttttatcggcattcgataagatggaaactcttcagaacatg 30672504  T
Q  310 caactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgac 409  Q
    ||||||||||| ||||||||||||| || || ||  ||||||||||||||||||| ||||||| ||||||  |||| | || ||||||| ||   || ||    
T  30672503 caactccaattatagcaaacatcactaagcaattcctaatcttgttttccacaatccctgtctcatcttcagcaaatggcaaaagcaaatgtgaatctac 30672404  T
Q  410 tatctcaaggattcc 424  Q
    |||||||| ||||||    
T  30672403 tatctcaaagattcc 30672389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 354 - 418
Target Start/End: Original strand, 28160440 - 28160504
Alignment:
Q  354 ttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgactatctcaag 418  Q
    ||||||||||||||||||||||||| | || ||| ||||||||||| |||||| |||||||||||    
T  28160440 ttttccacaattcctgtctgatcttggccatacggcataagcaaacattggtccactatctcaag 28160504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 30663680 - 30663603
Alignment:
Q  480 ctattggttggtctctttccggtgagcatctctaacagaagaatcccaaaactgtagatatctccctgtggtgatact 557  Q
    ||||| |||||||||||||| |||||||| ||||| |||||||| ||  | ||||||||||| || || |||||||||    
T  30663680 ctatttgttggtctctttccagtgagcatttctaatagaagaattccgtagctgtagatatcaccatgaggtgatact 30663603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 30672360 - 30672283
Alignment:
Q  480 ctattggttggtctctttccggtgagcatctctaacagaagaatcccaaaactgtagatatctccctgtggtgatact 557  Q
    ||||| |||||||||||||| |||||||| ||||| |||||||| ||  | ||||||||||| || || |||||||||    
T  30672360 ctatttgttggtctctttccagtgagcatttctaatagaagaattccgtagctgtagatatcaccatgaggtgatact 30672283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 408 - 543
Target Start/End: Complemental strand, 15294487 - 15294352
Alignment:
Q  408 actatctcaaggattccttcagaaattttcattttacaaaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctctttccggtgagca 507  Q
    ||||||||||| |||||||| | ||||||||| |||||||| |  ||||| |||| ||||||||| || || ||||| ||||||||||||||||||||||    
T  15294487 actatctcaagaattccttctggaattttcatcttacaaaatttctgtagacttagattctcacagaacatgctatttgttggtctctttccggtgagca 15294388  T
Q  508 tctctaacagaagaatcccaaaactgtagatatctc 543  Q
    | || ||||| ||||||||| | |||||||||||||    
T  15294387 tttccaacagcagaatcccatagctgtagatatctc 15294352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 408 - 543
Target Start/End: Complemental strand, 15474856 - 15474721
Alignment:
Q  408 actatctcaaggattccttcagaaattttcattttacaaaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctctttccggtgagca 507  Q
    ||||||||||| |||||||| | ||||||||| |||||||| |  ||||| |||| ||||||||| || || ||||| ||||||||||||||||||||||    
T  15474856 actatctcaagaattccttctggaattttcatcttacaaaatttctgtagacttagattctcacagaacatgctatttgttggtctctttccggtgagca 15474757  T
Q  508 tctctaacagaagaatcccaaaactgtagatatctc 543  Q
    | || ||||| ||||||||| | |||||||||||||    
T  15474756 tttccaacagcagaatcccatagctgtagatatctc 15474721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 734 - 792
Target Start/End: Complemental strand, 15294170 - 15294112
Alignment:
Q  734 aagaactttaccaggaggaatatatcctattgttcctttaattgtagaggaaattactt 792  Q
    |||||||||||||||||||||||||||||| |||||||||||  |||||| ||| ||||    
T  15294170 aagaactttaccaggaggaatatatcctatagttcctttaatcttagaggcaataactt 15294112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 734 - 792
Target Start/End: Complemental strand, 15474539 - 15474481
Alignment:
Q  734 aagaactttaccaggaggaatatatcctattgttcctttaattgtagaggaaattactt 792  Q
    |||||||||||||||||||||||||||||| |||||||||||  |||||| ||| ||||    
T  15474539 aagaactttaccaggaggaatatatcctatagttcctttaatcttagaggcaataactt 15474481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 389 - 511
Target Start/End: Complemental strand, 13565024 - 13564902
Alignment:
Q  389 cataagcaaacgttggtcgactatctcaaggattccttcagaaattttcattttacaaaaatcgtgtaggcttaaattctcacaaaatatactattggtt 488  Q
    ||||||||||||||| || |||||| ||||||||||||| | ||||||||| |||||  ||| ||||||  ||| |   ||  |||| ||  |||  |||    
T  13565024 cataagcaaacgttgatccactatcgcaaggattccttctggaattttcatcttacagtaattgtgtagatttagaccgtcggaaaacatgatatccgtt 13564925  T
Q  489 ggtctctttccggtgagcatctc 511  Q
    |||||||||||||||||||||||    
T  13564924 ggtctctttccggtgagcatctc 13564902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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