View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5107-Insertion-2 (Length: 586)

Name: NF5107-Insertion-2
Description: NF5107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5107-Insertion-2
NF5107-Insertion-2
[»] chr5 (24 HSPs)
chr5 (297-584)||(10218131-10218419)
chr5 (175-322)||(11049560-11049722)
chr5 (8-257)||(10609946-10610194)
chr5 (169-258)||(10218450-10218539)
chr5 (8-129)||(11049718-11049845)
chr5 (71-256)||(10563325-10563510)
chr5 (21-245)||(10742439-10742663)
chr5 (73-199)||(10718681-10718807)
chr5 (71-204)||(10764875-10765008)
chr5 (281-558)||(10603276-10603551)
chr5 (418-569)||(10664558-10664710)
chr5 (281-561)||(10599611-10599889)
chr5 (432-584)||(10661470-10661623)
chr5 (75-256)||(10748741-10748922)
chr5 (408-480)||(10764622-10764694)
chr5 (513-584)||(10653584-10653655)
chr5 (275-561)||(10610227-10610511)
chr5 (410-561)||(10748423-10748575)
chr5 (431-569)||(7191675-7191814)
chr5 (430-560)||(10557589-10557720)
chr5 (435-555)||(10549467-10549588)
chr5 (25-128)||(10549045-10549148)
chr5 (273-322)||(10579522-10579571)
chr5 (273-322)||(10590072-10590121)
[»] chr6 (9 HSPs)
chr6 (21-256)||(12956326-12956561)
chr6 (11-203)||(12897804-12897995)
chr6 (96-256)||(12930599-12930759)
chr6 (21-203)||(12905434-12905617)
chr6 (21-256)||(12946889-12947124)
chr6 (513-571)||(12956834-12956892)
chr6 (411-569)||(12905840-12905999)
chr6 (430-568)||(12930948-12931087)
chr6 (533-568)||(12947417-12947452)
[»] chr2 (3 HSPs)
chr2 (21-203)||(17925185-17925367)
chr2 (411-480)||(17924893-17924962)
chr2 (513-569)||(17924803-17924859)
[»] chr3 (1 HSPs)
chr3 (273-322)||(31468804-31468853)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 297 - 584
Target Start/End: Complemental strand, 10218419 - 10218131
Alignment:
Q  297 ccaatccccacttccataacaaatgcatcatctcccattacaatatttgatctcggtcaaaactattttgttggacaagttccaactctaggatggctaa 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218419 ccaatccccacttccataacaaatgcatcatctcccattacaatatttgatctcggtcaaaactattttgttggacaagttccaactctaggatggctaa 10218320  T
Q  397 aagatctactattgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgca 495  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  10218319 atgatctactattgctaagtttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaaattgtactaagttgca 10218220  T
Q  496 agtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaacttattgagctatatgttg 584  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218219 agtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaacttattgagctatatgttg 10218131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 175 - 322
Target Start/End: Complemental strand, 11049722 - 11049560
Alignment:
Q  175 cttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtt---------------tct 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||    
T  11049722 cttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtttcatgccttccccaatct 11049623  T
Q  260 ccaattttgtgcgattgggggaaatcaattctcaggtccaatccccacttccataacaaatgc 322  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11049622 ccaattttgtgcgattgggggaaatcaattctcaggaccaatccccacttccataacaaatgc 11049560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 10609946 - 10610194
Alignment:
Q  8 aaattaaccggagggaatcccttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaacttagaaagagatattccacaagaa 107  Q
    |||||||||||||| ||| ||||||||| |||||||||||||| |||||||   ||||||| || |||  |||||||||||| | |||||||||||||||    
T  10609946 aaattaaccggagg-aattccttcattcgtagggaatctttcatgcttaacgcgtttttcagttacttcaaacaacttagaaggggatattccacaagaa 10610044  T
Q  108 atatgtcacctcaaaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttattgagc 207  Q
    | |||||  |||||||  |||  |  ||||  |  |||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||| |    
T  10610045 acatgtcgtctcaaaaatttgagaggtttatttatgggtgtaaactatttgtctggtatgattccttcttgtctttacaatatctcagcacttactgaac 10610144  T
Q  208 tcacactaacaatgaataacttttatggctctcttccacccaacatgttt 257  Q
    || ||||||| |||||||  ||| ||||||| ||||||||||||||||||    
T  10610145 tctcactaaccatgaatagatttaatggctcacttccacccaacatgttt 10610194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 10218539 - 10218450
Alignment:
Q  169 ttccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtttc 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218539 ttccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtttc 10218450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 11049845 - 11049718
Alignment:
Q  8 aaattaaccggagggaatcccttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaactt-------agaaagagatattcc 100  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||       |||| ||||||||||    
T  11049845 aaattaactggagg-aatcccttcattcatagggaatctttcaagcttaaccgatttttcatttgtgtataacaacttagaacttagaaggagatattcc 11049747  T
Q  101 acaagaaatatgtcacctcaaaagcttgt 129  Q
    |||||||||||||||||||||||||||||    
T  11049746 acaagaaatatgtcacctcaaaagcttgt 11049718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 71 - 256
Target Start/End: Original strand, 10563325 - 10563510
Alignment:
Q  71 tgcttataacaacttagaaagagatattccacaagaaatatgtcacctcaaaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgatt 170  Q
    ||||| |||||| |||| | ||||||||||||  ||| |||| | |||||||| |||| || |||||     ||||| |||||| |||||||||||||||    
T  10563325 tgcttctaacaaattaggaggagatattccacgtgaagtatgccgcctcaaaaacttgacacttttattgttgggtgagaacaaattgtctggtatgatt 10563424  T
Q  171 ccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtt 256  Q
    ||| ||||| |||||||||| |||||||| ||||||||| |||||   ||||||||||||  ||||| ||||||| ||||||||||    
T  10563425 cctccttgtatttacaatatgtcatcactaattgagctctcactagtcatgaataactttactggctatcttccatccaacatgtt 10563510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 21 - 245
Target Start/End: Complemental strand, 10742663 - 10742439
Alignment:
Q  21 ggaatcccttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaacttagaaagagatattccacaagaaatatgtcacctca 120  Q
    |||||| |||||| |||||||||||||||||| ||||    ||||||  || |||  |||||||||||| | ||||||||||||||||||||||  || |    
T  10742663 ggaatctcttcatccatagggaatctttcaagtttaatgcttttttcggttccttcaaacaacttagaaggggatattccacaagaaatatgtcgtctaa 10742564  T
Q  121 aaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttattgagctcacactaacaat 220  Q
    |||  |||  |  |||| ||  |||||| ||| |||||||||||||| ||||||||||| |||||||||| |||| ||| | ||||||  |||||   ||    
T  10742563 aaaatttgagaggtttatatatgggtgtaaactatttgtctggtatggttccttcttgtatttacaatatgtcattactgactgagctttcactagtcat 10742464  T
Q  221 gaataacttttatggctctcttcca 245  Q
    |||||||||  ||||||||||||||    
T  10742463 gaataacttcaatggctctcttcca 10742439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 10718807 - 10718681
Alignment:
Q  73 cttataacaacttagaaagagatattccacaagaaatatgtcacctcaaaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgattcc 172  Q
    ||||||||||||||||  ||| |||||||| |||||||||||  ||||||| |||| |||||||| ||   | |   ||||||||||||||||| |||||    
T  10718807 cttataacaacttagacggagttattccaccagaaatatgtcgtctcaaaaacttgacaattttatatgcagatcctaacaatttgtctggtataattcc 10718708  T
Q  173 ttcttgtttttacaatatctcatcact 199  Q
    |||||||||||||||||||||||||||    
T  10718707 ttcttgtttttacaatatctcatcact 10718681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 71 - 204
Target Start/End: Complemental strand, 10765008 - 10764875
Alignment:
Q  71 tgcttataacaacttagaaagagatattccacaagaaatatgtcacctcaaaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgatt 170  Q
    ||||| |||||| |||| | |||||||||||||||||||||||| |||||||| |||| || |||||  |   || | ||||||||||||||||| ||||    
T  10765008 tgcttctaacaaattaggaggagatattccacaagaaatatgtcgcctcaaaaacttgacatttttatcttttggcgagaacaatttgtctggtaagatt 10764909  T
Q  171 ccttcttgtttttacaatatctcatcacttattg 204  Q
    || |||||| |||| |||||||||||||||||||    
T  10764908 ccatcttgtctttataatatctcatcacttattg 10764875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 281 - 558
Target Start/End: Original strand, 10603276 - 10603551
Alignment:
Q  281 aaatcaattctcaggtccaatccccacttccataacaaatgcatcatctcccattacaatatttgatctcggtcaaaactattttgttggacaagttcca 380  Q
    ||||||||||| |||||||||||||||||| ||  | ||||| || |||    | ||| |||||||  | ||| | ||| ||||||||||||||||||||    
T  10603276 aaatcaattcttaggtccaatccccacttcaatttcgaatgcttcttctt---tgacattatttgaaattggtgacaaccattttgttggacaagttcca 10603372  T
Q  381 actctaggatggctaaaagatctactattgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-a 479  Q
    | ||||||   ||||||||||||    |||||||||||||||   |||  |||||||||||| |||||||  |||||||||||||||||||| ||||| |    
T  10603373 agtctagggaagctaaaagatctttatttgctaaatttggaaatgaacattttaggtgacaactcaacaattgatttggagtttttaaaatcattgacaa 10603472  T
Q  480 attatactaagttgcaagtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatc 558  Q
    | | || ||||||||||   || ||| ||| |||||| ||||||||||| |  |||| |||||  ||||| ||||||||    
T  10603473 actgtagtaagttgcaatcactatctttaaccaataataattttggaggtagtttgcaaaattctataggaaatttatc 10603551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 418 - 569
Target Start/End: Complemental strand, 10664710 - 10664558
Alignment:
Q  418 tggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataaacaataa 516  Q
    |||||| ||||  |||||||||||| ||||| |||||||||||||| ||||| || ||||| |||| || ||   | |||||| ||||||||  ||||||    
T  10664710 tggaattcaacagtttaggtgacaactcaactaaggatttggagttcttaaagtccttgacgaattgtagtagactacaagtgatttctatatgcaataa 10664611  T
Q  517 caattttggaggcaacttgccaaatttcataggcaatttatccactgaactta 569  Q
     |||||||||| ||| ||| |||||||| ||||||||||||||| | ||||||    
T  10664610 taattttggagccaaattgacaaatttcgtaggcaatttatccaatcaactta 10664558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 281 - 561
Target Start/End: Original strand, 10599611 - 10599889
Alignment:
Q  281 aaatcaattctcaggtccaatccccacttccataacaaatgcatcatctcccattacaatatttgatctcggtcaaaactattttgttggacaagttcca 380  Q
    |||| ||||||||||||||||||| ||||| ||  ||||||| || |||    | ||| |||||||  ||||| | ||| ||||||||||||||||||||    
T  10599611 aaataaattctcaggtccaatccctacttcaatttcaaatgcttcttctt---tgacattatttgaaatcggtgacaaccattttgttggacaagttcca 10599707  T
Q  381 actctaggatggctaaaagatctactattgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-a 479  Q
    | ||||||   ||||||||||||    |||||||||||||||   |||  |||||||||||  ||||||| ||||||| ||||||| || || ||||| |    
T  10599708 agtctagggaagctaaaagatctttatttgctaaatttggaaatgaacattttaggtgacagctcaacaatggatttgcagtttttgaagtcattgacaa 10599807  T
Q  480 attatactaagttgcaagtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatccac 561  Q
    | | || ||||||||||  ||| ||| ||| | |||| ||||||||||| |  |||| |||||  || || |||||||||||    
T  10599808 actgtagtaagttgcaatcgctatctttaacctataataattttggaggtagtttgcaaaattctattggaaatttatccac 10599889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 432 - 584
Target Start/End: Complemental strand, 10661623 - 10661470
Alignment:
Q  432 ttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaattat-actaagttgcaagtgctttctataaacaataacaattttggaggca 530  Q
    ||||||||||||||||| ||||||||||||||||| ||| | |||||||   | |||||  |   |||| ||||||||  || |||  ||||||| || |    
T  10661623 ttaggtgacaattcaactaaggatttggagtttttgaaaaccttgacaaacttcactaaactaagagtgatttctatatccagtaatcattttgggggta 10661524  T
Q  531 acttgccaaatttcataggcaatttatccactgaacttattgagctatatgttg 584  Q
    |||||||||||||  ||||||||||||||||| |||||| | ||||||||||||    
T  10661523 acttgccaaattttgtaggcaatttatccactcaacttagtcagctatatgttg 10661470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 75 - 256
Target Start/End: Complemental strand, 10748922 - 10748741
Alignment:
Q  75 tataacaacttagaaagagatattccacaagaaatatgtcacctcaaaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgattcctt 174  Q
    |||||||||||| |  |||| |||||||||||||||||| | ||||||| | |   ||  ||| ||  ||||| ||||||||||||||||||| ||||||    
T  10748922 tataacaacttaaagggagagattccacaagaaatatgtaatctcaaaaacattagaaggttacatgtgggtgagaacaatttgtctggtatgtttcctt 10748823  T
Q  175 cttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtt 256  Q
    ||||| |||| |||||||||||||| | | | ||| |||||||    ||||| |||  ||||||||||||| ||||| ||||    
T  10748822 cttgtctttataatatctcatcactaactcaactctcactaaccgaaaataaatttattggctctcttccatccaacttgtt 10748741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 408 - 480
Target Start/End: Complemental strand, 10764694 - 10764622
Alignment:
Q  408 ttgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaa 480  Q
    ||||||||||||||| | ||| |||||||||||||||| |||| |||||| ||||||||||||| ||||||||    
T  10764694 ttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttttaaaatatttgacaa 10764622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 513 - 584
Target Start/End: Complemental strand, 10653655 - 10653584
Alignment:
Q  513 ataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaacttattgagctatatgttg 584  Q
    |||| ||||||||||| ||||||||||||||  ||||||||||||||||| |||||| | ||||||||||||    
T  10653655 ataataattttggaggtaacttgccaaattttgtaggcaatttatccactcaacttagtcagctatatgttg 10653584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 561
Target Start/End: Original strand, 10610227 - 10610511
Alignment:
Q  275 tgggggaaatcaattctcaggtccaatccccacttccataacaaatgcatcatctcccattacaa-tatttgatctcggtcaaaactattttgttggaca 373  Q
    ||| ||||||||||||||||||||||||||   ||||||  ||||||| || || |    ||||| || ||||| | ||||||||| |||| ||||||||    
T  10610227 tggaggaaatcaattctcaggtccaatccctgtttccattgcaaatgcttcttccc----tacaaataattgatttaggtcaaaacaatttggttggaca 10610322  T
Q  374 agttccaactctaggatggctaaaagatctactattgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatct 473  Q
    |||||||| |||||    | ||  ||||||    | ||| | |||||||||||||||||| ||| |||||||||| |  ||||| ||||||||||||| |    
T  10610323 agttccaagtctagagaagttaccagatctttactggctgagtttggaatacaactatttcggtaacaattcaactatagatttagagtttttaaaatat 10610422  T
Q  474 ttgac-aattatactaagttgcaagtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatccac 561  Q
    ||||| || | || |||  |  ||  ||||||||||   ||||| || |||||||| |  |||||||||||||| ||||||||||||||    
T  10610423 ttgacaaactgtagtaaactagaaaagctttctatatctaataataagtttggaggtagtttgccaaatttcattggcaatttatccac 10610511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 561
Target Start/End: Complemental strand, 10748575 - 10748423
Alignment:
Q  410 gctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctata 508  Q
    ||||||||||||| |||||||||| ||| |||||||||| |  ||||| ||||||||||| | |||||| |||| || |||  |  ||||| ||||||||    
T  10748575 gctaaatttggaagacaactatttcggtaacaattcaactatcgatttagagtttttaaagtatttgacaaattgtagtaaactagaagtggtttctata 10748476  T
Q  509 aacaataacaattttggaggcaacttgccaaatttcataggcaatttatccac 561  Q
       ||||| || |||||||| |  |||||||||| ||| |||| |||||||||    
T  10748475 tgtaataataagtttggaggtagtttgccaaattccattggcagtttatccac 10748423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 569
Target Start/End: Original strand, 7191675 - 7191814
Alignment:
Q  431 tttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataaacaataacaattttggaggc 529  Q
    ||||||| ||||||| || |||||||| |||||||||||||| ||||| || | || |||  | | |||| ||||||||  |  ||| |||||||||||     
T  7191675 tttaggtaacaattccactaaggatttagagtttttaaaatccttgacaaactgtagtaaactactagtgttttctatatcctttaataattttggaggt 7191774  T
Q  530 aacttgccaaatttcataggcaatttatccactgaactta 569  Q
    || |||||||||| ||| || |||||||||||| ||||||    
T  7191775 aatttgccaaattccattgggaatttatccactcaactta 7191814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 430 - 560
Target Start/End: Original strand, 10557589 - 10557720
Alignment:
Q  430 atttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataaacaataacaattttggagg 528  Q
    |||| ||||| |||||||| |||||||||   ||||||||||| ||||| || | || |||||||||||||  |||||||  | |||| |||||||||||    
T  10557589 attttggtgaaaattcaactaaggatttgatttttttaaaatcattgactaactgtagtaagttgcaagtgtgttctatatcccataataattttggagg 10557688  T
Q  529 caacttgccaaatttcataggcaatttatcca 560  Q
     |  |||||||||||   ||||||||||||||    
T  10557689 tagtttgccaaatttggcaggcaatttatcca 10557720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 435 - 555
Target Start/End: Original strand, 10549467 - 10549588
Alignment:
Q  435 ggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataaacaataacaattttggaggcaact 533  Q
    |||||||||||||| |||||||| || ||||||||| | ||||| |||| || ||| |||||||   ||||||||  | |||| ||||||||||| |  |    
T  10549467 ggtgacaattcaactaaggatttagaatttttaaaaccattgacaaattgtagtaatttgcaagcattttctatatcccataataattttggaggtagtt 10549566  T
Q  534 tgccaaatttcataggcaattt 555  Q
    |||||| ||||||||| |||||    
T  10549567 tgccaagtttcataggtaattt 10549588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 10549045 - 10549148
Alignment:
Q  25 tcccttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaacttagaaagagatattccacaagaaatatgtcacctcaaaag 124  Q
    ||||| ||||| ||||||||||||||   || |  | ||||||| || |||||||||| || ||  ||||||||||||||||||||||||  |||||||     
T  10549045 tccctccattcttagggaatctttcatatttgataggtttttcagtttcttataacaatttggagggagatattccacaagaaatatgtcgtctcaaaaa 10549144  T
Q  125 cttg 128  Q
    ||||    
T  10549145 cttg 10549148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 10579522 - 10579571
Alignment:
Q  273 attgggggaaatcaattctcaggtccaatccccacttccataacaaatgc 322  Q
    ||||| |||||||||||||| ||||||||||| ||||||||  |||||||    
T  10579522 attggaggaaatcaattctctggtccaatcccaacttccattgcaaatgc 10579571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 10590121 - 10590072
Alignment:
Q  273 attgggggaaatcaattctcaggtccaatccccacttccataacaaatgc 322  Q
    ||||| |||||||||||||| ||||||||||| ||||||||  |||||||    
T  10590121 attggaggaaatcaattctctggtccaatcccaacttccattgcaaatgc 10590072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 12956326 - 12956561
Alignment:
Q  21 ggaatcccttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaacttagaaagagatattccacaagaaatatgtcacctca 120  Q
    |||||||||||||||||||| |||||||||||||||||   | | |||  | ||  |||||| || ||  |||||||||||||||||||||||  |  ||    
T  12956326 ggaatcccttcattcataggaaatctttcaagcttaacacgtctatcagcttctcgtaacaattttgagggagatattccacaagaaatatgttgctgca 12956425  T
Q  121 aaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttattgagctcacactaacaat 220  Q
    ||  |||| || |||||  |  ||||| |||||||||||| |||| ||||||||||||| |||| |||||||||||||||||||  ||  |  |||||      
T  12956426 aacacttgacatttttagctttgggtgagaacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattgcccttgcggtaacaca 12956525  T
Q  221 gaataacttttatggctctcttccacccaacatgtt 256  Q
     |||||| || |||||||| ||||||||||||||||    
T  12956526 aaataaccttcatggctcttttccacccaacatgtt 12956561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 12897804 - 12897995
Alignment:
Q  11 ttaaccggagggaatcccttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaacttagaaagagatattccacaagaaata 110  Q
    ||||||||||| ||||||||||||||| || |||||||||||||||||   | | ||| || || | ||||| || ||  ||||||||||||||||||||    
T  12897804 ttaaccggagg-aatcccttcattcattggaaatctttcaagcttaacacgtctgtcagtttctgaaaacaattttgagggagatattccacaagaaata 12897902  T
Q  111 tgtcacctcaaaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttatt 203  Q
    |||  |||||||  |||| ||  ||||  |  | |||| ||||||||||| |||| ||||||||||||| |||| ||||||||||||||||||    
T  12897903 tgtttcctcaaacacttgacatatttaggtttgagtgtcaacaatttgtccggtaagattccttcttgtctttataatatctcatcacttatt 12897995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 96 - 256
Target Start/End: Original strand, 12930599 - 12930759
Alignment:
Q  96 attccacaagaaatatgtcacctcaaaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcat 195  Q
    ||||||||||||||||||  |||||||  |||| ||||||||  |  | ||| |||||||||||| |||| ||||||||||||| |||| ||||||||||    
T  12930599 attccacaagaaatatgtttcctcaaacacttgacaattttaggtgtgagtgagaacaatttgtccggtaagattccttcttgtctttataatatctcat 12930698  T
Q  196 cacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtt 256  Q
    ||||||||   || ||  |||||  |||| || || |||||||| ||||||||||||||||    
T  12930699 cacttatttcccttacggtaacacagaatcaccttcatggctcttttccacccaacatgtt 12930759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 12905434 - 12905617
Alignment:
Q  21 ggaatcccttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaacttagaaagagatattccacaagaaatatgtcacctca 120  Q
    |||||||||||||||||||| ||| |||||||||||||   | | ||| || ||  |||||| || ||  |||||||||||||||||||||||  |||||    
T  12905434 ggaatcccttcattcataggaaatatttcaagcttaacacgtctatcagtttctggtaacaattttgagggagatattccacaagaaatatgtttcctca 12905533  T
Q  121 aaagcttgtcaattttaaatcggggtgtg-aacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttatt 203  Q
    ||  |||| || |||||  |  ||||| | ||||||||||| |||| ||| ||||||||| |||| ||||||||||||||||||    
T  12905534 aacacttgacatttttagctttgggtgagaaacaatttgtccggtaagataccttcttgtctttataatatctcatcacttatt 12905617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 12946889 - 12947124
Alignment:
Q  21 ggaatcccttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaacttagaaagagatattccacaagaaatatgtcacctca 120  Q
    ||||||||||||||||| || |||||||||||||||||   | | | | || || | ||||| || ||  |||| ||||||||||||||||||   ||||    
T  12946889 ggaatcccttcattcattggaaatctttcaagcttaacacgtctattagtttctgaaaacaattttgagggagacattccacaagaaatatgttttctca 12946988  T
Q  121 aaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttattgagctcacactaacaat 220  Q
    ||  |||| || |||||  |  |  || |||||||||||| |||| ||||||||||||| |||| |||||||||||||||||||  ||  |  ||||| |    
T  12946989 aacacttgacatttttagctttgaatgagaacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattgtcctttcggtaacact 12947088  T
Q  221 gaataacttttatggctctcttccacccaacatgtt 256  Q
    |||| || || |||||||| || |||||||||||||    
T  12947089 gaatcaccttcatggctcttttgcacccaacatgtt 12947124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 513 - 571
Target Start/End: Original strand, 12956834 - 12956892
Alignment:
Q  513 ataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaacttatt 571  Q
    |||| |||||||||||| | |||||||||| |||||| |||||||||||||||||||||    
T  12956834 ataataattttggaggccatttgccaaattccatagggaatttatccactgaacttatt 12956892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 569
Target Start/End: Original strand, 12905840 - 12905999
Alignment:
Q  411 ctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataa 509  Q
    |||| ||||| || |||| |||||||| ||| |||||| |||||||| ||||||||||||| |||||| ||||  | |||  |  | |||||||| |||     
T  12905840 ctaagtttgggattcaacaatttaggtaacatttcaactaaggatttagagtttttaaaatatttgacaaattgcagtaaactatacgtgctttcaatag 12905939  T
Q  510 acaataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaactta 569  Q
    |   ||| |||||||||||  | |||||||||| ||||||||| || |||||||||||||    
T  12905940 attctaataattttggaggacatttgccaaattccataggcaacttttccactgaactta 12905999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 430 - 568
Target Start/End: Original strand, 12930948 - 12931087
Alignment:
Q  430 atttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaa-ttatactaagttgcaagtgctttctataaacaataacaattttggagg 528  Q
    |||||||| |||||||||| | |||||| ||||||||||||| |||||||| ||  | |||  |  | |||||||| |||    |||| |||||||||||    
T  12930948 atttaggtaacaattcaactatggatttagagtttttaaaatatttgacaaattgcagtaaactatacgtgctttcgatatcttataataattttggagg 12931047  T
Q  529 caacttgccaaatttcataggcaatttatccactgaactt 568  Q
      | |||||||||| ||||||||||||||| |||||||||    
T  12931048 tcatttgccaaattccataggcaatttatcgactgaactt 12931087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 533 - 568
Target Start/End: Original strand, 12947417 - 12947452
Alignment:
Q  533 ttgccaaatttcataggcaatttatccactgaactt 568  Q
    |||||||||| |||||||||||||||||||||||||    
T  12947417 ttgccaaattccataggcaatttatccactgaactt 12947452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 17925367 - 17925185
Alignment:
Q  21 ggaatcccttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaacttagaaagagatattccacaagaaatatgtcacctca 120  Q
    |||||||||||||||||||| ||||||||| |||||||   | | |||  ||||  |||||| || ||  |||||||||||||||||||||||  || ||    
T  17925367 ggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgagggagatattccacaagaaatatgttgccgca 17925268  T
Q  121 aaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttatt 203  Q
    ||  |||| || |||||  |  ||||| ||||||||| || |||| |||||| |||||| |||| || |||||||||||||||    
T  17925267 aacacttgacatttttagctttgggtgagaacaatttttccggtaagattccatcttgtctttataacatctcatcacttatt 17925185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 480
Target Start/End: Complemental strand, 17924962 - 17924893
Alignment:
Q  411 ctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaa 480  Q
    |||||||||||| | ||| |||||||||| |||||||| | |||||| ||||||||||||| ||||||||    
T  17924962 ctaaatttggaagaaaacaatttaggtgataattcaactatggatttagagtttttaaaatatttgacaa 17924893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 513 - 569
Target Start/End: Complemental strand, 17924859 - 17924803
Alignment:
Q  513 ataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaactta 569  Q
    |||| |||||||||||  | |||||||||| |||||| |||||||||||||||||||    
T  17924859 ataataattttggaggtcatttgccaaattccatagggaatttatccactgaactta 17924803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 31468853 - 31468804
Alignment:
Q  273 attgggggaaatcaattctcaggtccaatccccacttccataacaaatgc 322  Q
    ||||| || ||||||||||||||||||||||| ||||||||| |||||||    
T  31468853 attggtgggaatcaattctcaggtccaatcccaacttccatatcaaatgc 31468804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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