View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5107-Insertion-4 (Length: 472)
Name: NF5107-Insertion-4
Description: NF5107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5107-Insertion-4 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 472
Target Start/End: Original strand, 45052003 - 45052463
Alignment:
| Q |
8 |
tgtttctcttcaaagaatggacatgtgctcctatttctttcacaacatgaagatgaacaaggttgtgcaaataacttaagtggaacctactgaaataacg |
107 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
45052003 |
tgtttctcttcaaagaatggacatgtgctcctaatactttcacaacatgaagatgaacaaggttgtgcaaataacttaagtggaacctactcaagtaacg |
45052102 |
T |
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| Q |
108 |
gagcatcgagcaccatgaaagaactatcatatatttagatccatcttatctctatcaaagattcagcattgctctctcaataagaagtttgaaaacttta |
207 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45052103 |
gagcatcgagcaccatgaaagaactatcatatttttagatccatcttatctctatc-aagattgagcattgctctctcaataagaagtttgaaaacttta |
45052201 |
T |
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| Q |
208 |
cattcacttttctcctttcatcttcatcagggaacaaaacaatttctgaaacttttttctcttttctcaatgagctcaatgtcttgatgcgtagggactc |
307 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45052202 |
cattcacttttctcctttcatcttcatcaaggaacaaaacaatttctgaaac-tttttctcttttcttaatgagctcaatgtcttgatgcgtagggactc |
45052300 |
T |
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| Q |
308 |
tctattagtatctttgcttagccattatgtactataattgctacnnnnnnnnnnnntatatctataaatttatgtaatccaacataagaacgttagaaag |
407 |
Q |
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| T |
45052301 |
tctattagtatatttgcttagccattatgtactataattgctac--aaaaaaataatatatctataaatttatgtaatccaacataagaa-gttagaaag |
45052397 |
T |
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| Q |
408 |
catctagcaaagactaaataa-cttggattttaagtatataatcaacattttcccaccaattatcg |
472 |
Q |
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| T |
45052398 |
catctagcaaagactaaataaccttggattttaagtatataatcaacattttcccaccaattatcg |
45052463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 23930500 - 23930383
Alignment:
| Q |
8 |
tgtttctcttcaaagaatggacatgtgctcctatttctttcacaacatgaagatgaacaaggttgtgcaaataacttaagtggaacctactgaaataacg |
107 |
Q |
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||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||| | ||||| || |||||||| ||||| |||| ||| | |
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| T |
23930500 |
tgtttctcttcaaagaatggataattgctctaatttcattcacaacatgaagatgaacaaggctatgcaagtagcttaagtgtaaccttttgaagtaatg |
23930401 |
T |
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| Q |
108 |
gagcatcgagcaccatgaa |
126 |
Q |
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| T |
23930400 |
gagc-tcgagcaccatgaa |
23930383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 26625453 - 26625509
Alignment:
| Q |
30 |
atgtgctcctatttctttcacaacatgaagatgaacaaggttgtgcaaataacttaa |
86 |
Q |
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| T |
26625453 |
atgtgctccaacttctttcacaatatgaagatgaataagtttgcgcaaatagcttaa |
26625509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 30 - 164
Target Start/End: Complemental strand, 9650614 - 9650481
Alignment:
| Q |
30 |
atgtgctcctatttctttcacaacatgaagatgaacaaggttgtgcaaataacttaagtggaacctactgaaataacggagcatcgagcaccatgaaaga |
129 |
Q |
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||||||||| ||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||| |||| ||| ||||| |||||||||||||| | |
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| T |
9650614 |
atgtgctccaatttctttcacaacatgaagacgtacaaggttgtgcaagtaacttaagtgcaaccttttgaagtaatggagc-tcgagcaccatgaacca |
9650516 |
T |
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| Q |
130 |
actatcatatatttagatccatcttatctctatca |
164 |
Q |
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| T |
9650515 |
atcaccatgtttttggatccatcttatctctatca |
9650481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 164
Target Start/End: Complemental strand, 35964702 - 35964569
Alignment:
| Q |
30 |
atgtgctcctatttctttcacaacatgaagatgaacaaggttgtgcaaataacttaagtggaacctactgaaataacggagcatcgagcaccatgaaaga |
129 |
Q |
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||||||||| ||| |||||||||||||||||| |||||||||| |||| || |||||||| ||||| | || ||| ||| | |||||||||||||| | |
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| T |
35964702 |
atgtgctccaattgctttcacaacatgaagataaacaaggttgcgcaagtagcttaagtgcaaccttttcaactaatggaac-tcgagcaccatgaacca |
35964604 |
T |
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| Q |
130 |
actatcatatatttagatccatcttatctctatca |
164 |
Q |
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| T |
35964603 |
accaccatgcttatggatccatcttatctctatca |
35964569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 35964147 - 35964180
Alignment:
| Q |
40 |
atttctttcacaacatgaagatgaacaaggttgt |
73 |
Q |
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| T |
35964147 |
atttctttcacaacatgaagatggacaaggttgt |
35964180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 40697741 - 40697833
Alignment:
| Q |
251 |
ttctgaaacttttttctcttttctcaatgagctcaatgtcttgatgcgtagggactctctattagtatctttgcttagccattatgtactataat |
345 |
Q |
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|||| |||| ||||||||||| |||| |||| |||||||||| ||| | ||||| ||||| ||||||||| ||||||||||||||| |||||| |
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| T |
40697741 |
ttctaaaacatttttctctttcctcagtgagttcaatgtcttcatgtgaaggga--ctctactagtatcttcacttagccattatgtattataat |
40697833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 40697544 - 40697590
Alignment:
| Q |
30 |
atgtgctcctatttctttcacaacatgaagatgaacaaggttgtgca |
76 |
Q |
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| T |
40697544 |
atgtgttccaatttctttcacaacatgaagatgaaaaaggttgtgca |
40697590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 15319583 - 15319528
Alignment:
| Q |
251 |
ttctgaaacttttttctcttttctcaatgagctcaatgtcttgatgcgtagggact |
306 |
Q |
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| T |
15319583 |
ttctgaaacatttttctctttccacagtgagctcaatgtcttgatgtggagggact |
15319528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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