View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5107-Insertion-5 (Length: 464)

Name: NF5107-Insertion-5
Description: NF5107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5107-Insertion-5
NF5107-Insertion-5
[»] chr6 (12 HSPs)
chr6 (8-464)||(31106117-31106573)
chr6 (26-157)||(31094776-31094907)
chr6 (22-157)||(31050414-31050544)
chr6 (236-344)||(31042595-31042699)
chr6 (89-205)||(31042820-31042939)
chr6 (238-301)||(31107925-31107988)
chr6 (26-110)||(21181570-21181654)
chr6 (33-96)||(21150284-21150347)
chr6 (34-93)||(21267171-21267230)
chr6 (64-110)||(21190542-21190588)
chr6 (62-110)||(21200822-21200870)
chr6 (33-101)||(21314582-21314650)
[»] scaffold0202 (1 HSPs)
scaffold0202 (22-162)||(3488-3628)
[»] scaffold0016 (2 HSPs)
scaffold0016 (33-103)||(65187-65257)
scaffold0016 (59-106)||(62015-62062)
[»] scaffold0272 (1 HSPs)
scaffold0272 (59-110)||(3441-3492)


Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Complemental strand, 31106573 - 31106117
Alignment:
Q  8 tatgtatgtgacagtgacgatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttaccattatca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31106573 tatgtatgtgacagtgacgatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttaccattatca 31106474  T
Q  108 tattatatggtccaagtcttcaacttacgtaacttgcacaaatagagagacggtggtgtacaaggaagcgaatgcaacgatgacaaggttatgaacgcag 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31106473 tattatatggtccaagtcttcaacttacgtgacttgcacaaatagagagacggtggtgttcaaggaagcgaatgcaacgatgacaaggttatgaacgcag 31106374  T
Q  208 gagcatcccgaagcagtgtcttcaagggatatcaaagacctagcagaaatactgaaactatcagcactcatatagttgaagagactaaataagatgatgg 307  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31106373 gagcatcccgaagcagtgacttcaagggatatcaaagacctagcagaaatactgaaactatcagcactcatatagttgaagagactaaataagatgatgg 31106274  T
Q  308 aaaactacaagctagttgtcagcaccattagagtaaattattttgaaccattcaatatcaacattatatgtcagaatgaaatgctgttcattttaatgat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31106273 aaaactacaagctagttgtcagcaccattagagtaaattattttgaaccattcaatatcaacattatatgtcaaaatgaaatgctgttcattttaatgat 31106174  T
Q  408 aaaagaaatttttggatagaatgacattttttagatcagattattatatcctttaac 464  Q
    |||||||||||||||||||||| ||||||||||||||| || |||||||||||||||    
T  31106173 aaaagaaatttttggatagaattacattttttagatcacatcattatatcctttaac 31106117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 31094776 - 31094907
Alignment:
Q  26 gatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttaccattatcatattatatggtccaagtc 125  Q
    ||||||||||||||||||||||||||| |||  || |||||||||||| |||||||||| |||||||||||| |||| ||||||||||||||||||||||    
T  31094776 gatgatacttttttagatgcacatgaagcaccgtcgcatttaacaaaaccattttaaatacattatgtatttcccatgatcatattatatggtccaagtc 31094875  T
Q  126 ttcaacttacgtaacttgcacaaatagagaga 157  Q
    ||||||||| |||||| |||||||||||||||    
T  31094876 ttcaacttaagtaactagcacaaatagagaga 31094907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 31050544 - 31050414
Alignment:
Q  22 tgacgatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttaccattatcatattatatggtcca 121  Q
    ||||||||||  ||||||||||||||||||| |||| |     ||||||||| |||||||||| ||||||||||| || || |||||| |||||||||||    
T  31050544 tgacgatgatgtttttttagatgcacatgaagcactgt-----ttaacaaaaccattttaaatacattatgtattaactatgatcatactatatggtcca 31050450  T
Q  122 agtcttcaacttacgtaacttgcacaaatagagaga 157  Q
    ||||||||||||  |||||| |||||||||||||||    
T  31050449 agtcttcaacttgagtaactagcacaaatagagaga 31050414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 236 - 344
Target Start/End: Complemental strand, 31042699 - 31042595
Alignment:
Q  236 atatcaaagacctagcagaaatactgaaactatcagcactcatatagttgaagagactaaataagatgatggaaaactacaagctagttgtcagcaccat 335  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||  || || |||||||    ||| |||||||||||    
T  31042699 atatcaaagacctagcagaaatagtgaaactatcaccactcatatagttgaatagaataaataagacaattgagaactaca----agtagtcagcaccat 31042604  T
Q  336 tagagtaaa 344  Q
    |||||||||    
T  31042603 tagagtaaa 31042595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 31042939 - 31042820
Alignment:
Q  89 tatgtatttaccattatcatattatatggtccaagtcttcaa---cttacgtaacttgcacaaatagagagacggtggtgtacaaggaagcgaatgcaac 185  Q
    |||||||||| ||| |||||||||||||||||||||||| ||   |||  |||||||||||||||||||||||||||| || | |||||| | |||||||    
T  31042939 tatgtatttatcatgatcatattatatggtccaagtctttaattacttctgtaacttgcacaaatagagagacggtggcgtgcgaggaagaggatgcaac 31042840  T
Q  186 gatgacaaggttatgaacgc 205  Q
    ||  ||||||||| ||||||    
T  31042839 gactacaaggttacgaacgc 31042820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 31107988 - 31107925
Alignment:
Q  238 atcaaagacctagcagaaatactgaaactatcagcactcatatagttgaagagactaaataaga 301  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||||||||||| |||||||||    
T  31107988 atcaaagacctagcagaaatcatgaaactatcaccactcatatagttgaagagaataaataaga 31107925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 21181570 - 21181654
Alignment:
Q  26 gatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttaccattatcatat 110  Q
    |||||| ||||||||||||| ||||||||| | |||||||||||| ||||||||| ||| |||||  | ||||||||||||||||    
T  21181570 gatgatgcttttttagatgctcatgaaacattgtcacatttaacataatcatttttaatacattaattgtttaccattatcatat 21181654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 21150284 - 21150347
Alignment:
Q  33 cttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatt 96  Q
    |||| |||||||||||||||||||| |||||||||||| ||||| ||||||| |||||| ||||    
T  21150284 ctttattagatgcacatgaaacactctcacatttaacataatcaatttaaatacattatatatt 21150347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 21267171 - 21267230
Alignment:
Q  34 ttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgt 93  Q
    |||||||||||||||| ||||||  |||| || |||| ||||||||||||||||||||||    
T  21267171 ttttttagatgcacataaaacaccgtcactttcaacataatcattttaaatgcattatgt 21267230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 21190542 - 21190588
Alignment:
Q  64 tttaacaaaatcattttaaatgcattatgtatttaccattatcatat 110  Q
    ||||||||||||||||||||  |||||||||||| ||||||| ||||    
T  21190542 tttaacaaaatcattttaaacacattatgtatttgccattattatat 21190588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 21200822 - 21200870
Alignment:
Q  62 catttaacaaaatcattttaaatgcattatgtatttaccattatcatat 110  Q
    ||||||| | ||||||||| ||| ||||||||| |||||||||||||||    
T  21200822 catttaagagaatcattttgaatacattatgtacttaccattatcatat 21200870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 21314582 - 21314650
Alignment:
Q  33 cttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttacca 101  Q
    |||||||| ||||| || ||||| | || || |||||| |||||||| |||||||||||| ||||||||    
T  21314582 cttttttatatgcatattaaacattgtcccacttaacagaatcatttcaaatgcattatgaatttacca 21314650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 3488 - 3628
Alignment:
Q  22 tgacgatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttaccattatcatattatatggtcca 121  Q
    ||||||||||||||||||||| ||||||||| ||||  |||||||||||||| |||||||||| |||||||||||| |||| ||||||||||| ||||||    
T  3488 tgacgatgatacttttttagaagcacatgaagcactgccacatttaacaaaaccattttaaatacattatgtatttcccatgatcatattataaggtcca 3587  T
Q  122 agtcttcaacttacgtaacttgcacaaatagagagacggtg 162  Q
    ||||||||||||  |||||| |||||||| |||||| ||||    
T  3588 agtcttcaacttcagtaactagcacaaatggagagatggtg 3628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 65257 - 65187
Alignment:
Q  33 cttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttaccatt 103  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||    
T  65257 cttttttaaatgcacatgaaacactatcacatttaacataatcattgtaaatacattatatatttaccatt 65187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 62062 - 62015
Alignment:
Q  59 tcacatttaacaaaatcattttaaatgcattatgtatttaccattatc 106  Q
    ||||||||||||||||||||| |||| ||| ||| |||||||||||||    
T  62062 tcacatttaacaaaatcatttcaaatacatgatgaatttaccattatc 62015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 3492 - 3441
Alignment:
Q  59 tcacatttaacaaaatcattttaaatgcattatgtatttaccattatcatat 110  Q
    |||||||||||| ||||||||| ||| |||||||||||||| ||||||||||    
T  3492 tcacatttaacagaatcattttgaatacattatgtatttacaattatcatat 3441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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