View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5108-Insertion-1 (Length: 757)
Name: NF5108-Insertion-1
Description: NF5108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5108-Insertion-1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 655; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 7 - 757
Target Start/End: Complemental strand, 12834927 - 12834170
Alignment:
| Q |
7 |
agaactctcttgcagcacctcttagttcatctccaactctatgaggtgaaaagaacctcacggttgggctagattttgtaccattacaaagtccaaagtg |
106 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12834927 |
agaactctcttgcagcacctcttagttcatctacaactctatgaggtgaaaagaacctcacggttgggctagattttgtaccattacaaagtccaaagtg |
12834828 |
T |
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| Q |
107 |
aaataaggggttcaacttgacaagagcaacctgcagtttgtnnnnnnnnggttactatatctccataatcaaatcatttacatgtatgaatttacttttg |
206 |
Q |
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| T |
12834827 |
aaataaggggttcaacttgacaagagcaacctgcagtttgtacgaaacaggttaatatatctccataatcaa-tcatttacatgtatgaatttacttttg |
12834729 |
T |
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| Q |
207 |
tgagagataaaactgattttagattcataaaatgtaattttgatcattatttgacgtgttttc--------aaatagaannnnnnnnnaatcaaaagtag |
298 |
Q |
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| T |
12834728 |
tgagagataaaactgattttagattcataaaatgtaattttgatcattatttgacgtgttttcgtgttttcaaatagaattattttttaatcaaaagtag |
12834629 |
T |
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| Q |
299 |
tctttaacttcaagctatatgattttgagctgttataaagaaaaaacagtttcagcttcaaatatattctttgatcacttttacgagaaaatttcaaaca |
398 |
Q |
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| T |
12834628 |
tctttaacttcaagctatatgattttgagctgttataaagaaaaaacagtttcagcttcaaatatattctttgatcacttttacgagaaaattccaaaca |
12834529 |
T |
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| Q |
399 |
taaaattttacattaaactaaaaccaattcatgatattatatatacgctattttggaaattaactaaaaatactttacctctaaccgcttatctccagtg |
498 |
Q |
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| T |
12834528 |
taaaattttacattaaactaaaaccaattcatgatattatatatacgctattttggaaattaactaaaaatactttacctctaaccgcttatctccagtg |
12834429 |
T |
|
| Q |
499 |
ctaaagggcttcattaaggaatatggtgacctctgattacatctgagaataccgttttcaataatagcaagagaataaggatgtcctccaatcaaataca |
598 |
Q |
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| T |
12834428 |
ctaaagggcttcattaaggaatatggtgacctctgattacatctgagaataccgttttcaataatagcaagagaataaggatgtcctcctatcaaataca |
12834329 |
T |
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| Q |
599 |
ggaaatcattgaagaaggatctccgatcaattacaccttctggactcccgacgctaataacagcatgaatgaccatggcattatacaaattcaagaagaa |
698 |
Q |
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| T |
12834328 |
ggaaatcattgaagaaggatctccgatcaattacaccttctggactcccgacgctaataacagcatgaatgaccatggcattatacaaattcaagaagaa |
12834229 |
T |
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| Q |
699 |
ggcaagcttttcattttccgatagttcaacaatattaactcgctgcagatcttgagtca |
757 |
Q |
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| T |
12834228 |
ggcaagcttttcattttccgatagttcaacaatattaactcgctgcagatcttgagtca |
12834170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 496 - 725
Target Start/End: Complemental strand, 13023605 - 13023379
Alignment:
| Q |
496 |
gtgctaaagggcttcattaaggaatatggtgacctctgattacatctgagaataccgttttcaataatagcaagagaataaggatgtcctccaatcaaat |
595 |
Q |
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|||| ||||||||| | ||||||||| || |||||| |||| | ||| || ||||| ||| ||| | ||||||||||||||||||||||||||||||| |
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| T |
13023605 |
gtgccaaagggcttgactaaggaataaggcgacctccgattgcttctaaggataccatttgttatagtggcaagagaataaggatgtcctccaatcaaat |
13023506 |
T |
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| Q |
596 |
acaggaaatcattgaagaaggatctccgatcaattacaccttctggactcccgacgctaataacagcatgaatgaccatggcattatacaaattcaagaa |
695 |
Q |
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| T |
13023505 |
actggaaatca---gagaaggatttcctgttaatttcaccttcttgacaccctactcttatcatagcatggatgacgatggcattgtacaagtttaagaa |
13023409 |
T |
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| Q |
696 |
gaaggcaagcttttcattttccgatagttc |
725 |
Q |
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| T |
13023408 |
gaatgcgagcttctcattttctgatagttc |
13023379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 13024634 - 13024533
Alignment:
| Q |
7 |
agaactctcttgcagcacctcttagttcatctccaactctatgaggtgaaaagaacctcacggttgggctagattttgtaccattacaaagtccaaagtg |
106 |
Q |
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| T |
13024634 |
agaactctctagttgcacatctcaattcatcagcaactctacaaggtgaaaaaaacctcacctttgggcttgatttagtgccattacaaagtccaaagtg |
13024535 |
T |
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| Q |
107 |
aa |
108 |
Q |
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|| |
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| T |
13024534 |
aa |
13024533 |
T |
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