View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5108_high_4 (Length: 398)
Name: NF5108_high_4
Description: NF5108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5108_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 42 - 369
Target Start/End: Original strand, 17486736 - 17487063
Alignment:
| Q |
42 |
tcagtgtaatttaatcttttctgagggttatttttcctctctttccttttcagtattggtgtaaaagtgccaatgtcgttgcaaattcttctgaatttaa |
141 |
Q |
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|||||||||||||||||||||||| ||||||||||| | ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17486736 |
tcagtgtaatttaatcttttctgatggttatttttcttttctttcctttttggtggtgttgtaaaagtgccaatgtcgttgcaaattcttctgaatttaa |
17486835 |
T |
|
| Q |
142 |
acgatatcccaaagattccatcccaccaataagattaacagcacactccttacaagctcgggaagaaagaagacacgtgaggaggtaattacaaatcatt |
241 |
Q |
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||| ||||| ||||||||||||| ||||||||||| |||| ||||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
17486836 |
acggtatccaaaagattccatcctaccaataagatcaacaacacactccttataatctcgggaataaagaagacacgtgaggaggtgattacaaatcatt |
17486935 |
T |
|
| Q |
242 |
ggcttcaacatgaaacccttctcaagaccgtaagaaaatatttttgttgcgtcatatagcctatgttccttacaaagacttctgatcaaatgtacacaac |
341 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||| |||||||| |||||| |||||||||||||| | |||||||||||||||||||| |
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| T |
17486936 |
ggcttcaacatgaaacccttctcaagactgtaaagaaatatttttactgcgtcatgtagcctttgttccttacaaaggcctctgatcaaatgtacacaac |
17487035 |
T |
|
| Q |
342 |
ttgtagcattgattttgatattgaactc |
369 |
Q |
| |
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||||||| |||||||||||||||||||| |
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| T |
17487036 |
ttgtagcgttgattttgatattgaactc |
17487063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 42 - 369
Target Start/End: Complemental strand, 6780342 - 6780015
Alignment:
| Q |
42 |
tcagtgtaatttaatcttttctgagggttatttttcctctctttccttttcagtattggtgtaaaagtgccaatgtcgttgcaaattcttctgaatttaa |
141 |
Q |
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|||||||||||||||||||||||| ||||||||||| | || |||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6780342 |
tcagtgtaatttaatcttttctgatggttatttttcttttccttcctttttggtagtggtgtaaaagtgtcaatgtcgttgcaaattcttctgaatttaa |
6780243 |
T |
|
| Q |
142 |
acgatatcccaaagattccatcccaccaataagattaacagcacactccttacaagctcgggaagaaagaagacacgtgaggaggtaattacaaatcatt |
241 |
Q |
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||| ||||| ||||||||||||| | ||||||||| |||||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
6780242 |
acggtatccaaaagattccatcctatcaataagatcaacagcacactccttataatctcgggaataaagaagacacgtgaggaggtgattacaaatcatt |
6780143 |
T |
|
| Q |
242 |
ggcttcaacatgaaacccttctcaagaccgtaagaaaatatttttgttgcgtcatatagcctatgttccttacaaagacttctgatcaaatgtacacaac |
341 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||| ||| |||| |||||| |||||||||||||| | |||||||||||||||||||| |
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| T |
6780142 |
ggcttcaacatgaaacccttctcaagactgtaaagaaatatttttactgcatcatgtagcctctgttccttacaaaggcctctgatcaaatgtacacaac |
6780043 |
T |
|
| Q |
342 |
ttgtagcattgattttgatattgaactc |
369 |
Q |
| |
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||||||| |||||||||||||||||||| |
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| T |
6780042 |
ttgtagcgttgattttgatattgaactc |
6780015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 42 - 296
Target Start/End: Complemental strand, 43099795 - 43099540
Alignment:
| Q |
42 |
tcagtgtaatttaatcttttctgagggttatttttcctctctttccttttcagtattggtgt-aaaagtgccaatgtcgttgcaaattcttctgaattta |
140 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43099795 |
tcagtgtaatttaatcttttctgagtgttatttttcctctctttccttttcagtattggtgttaaaagtgccaatgtcgttgcaaattcttctgaattta |
43099696 |
T |
|
| Q |
141 |
aacgatatcccaaagattccatcccaccaataagattaacagcacactccttacaagctcgggaagaaagaagacacgtgaggaggtaattacaaatcat |
240 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43099695 |
aacggtatcccaaagattccatcccaccaataagatcaacagcacactccttataagctcgggaagaaagaagacacgtgaggaggtaattacaaatcat |
43099596 |
T |
|
| Q |
241 |
tggcttcaacatgaaacccttctcaagaccgtaagaaaatatttttgttgcgtcat |
296 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||| |||||||| |
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| T |
43099595 |
tggcttcaacatgaaaaccttctcaagattttaagaaaatatttttactgcgtcat |
43099540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 43097556 - 43097492
Alignment:
| Q |
305 |
tgttccttacaaagacttctgatcaaatgtacacaacttgtagcattgattttgatattgaactc |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43097556 |
tgttccttacaaagacttctgatcaaatgtacacaacttgtagcattgattttgatattgaactc |
43097492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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