View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5108_high_9 (Length: 349)
Name: NF5108_high_9
Description: NF5108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5108_high_9 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 33 - 328
Target Start/End: Original strand, 22072187 - 22072482
Alignment:
| Q |
33 |
actaccaattcggtgacatgtctgtccttgtatcctcatggttggtggacctctacctttagtaaccttatcatcaaatttcatgcctggtgaactaaat |
132 |
Q |
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| T |
22072187 |
actaccaattcggtgacatgtctgtccttgtatcctcatggttggtggacctctacctttagtaaccttatcatcaaatttcatgcctggtgaactaaat |
22072286 |
T |
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| Q |
133 |
taaaacattgaattatacattcttgtgttttgctggaaatttttggtatcttctgattgatgatcaaagagtagatgttgaagtacaggaggaggttgtc |
232 |
Q |
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| T |
22072287 |
gaaaacattgaattatacattcttgtgttttgctggaaatttttggaatcttctgattgatgatcaaagagtagatgttgaagtacagaaggaggttgtc |
22072386 |
T |
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| Q |
233 |
ttagaagaggaagttggacttttccattcccgcaacacagttgaaataaaggtgttgttgtagacttagatttatgtttcctttctaaataccaca |
328 |
Q |
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| T |
22072387 |
ttagaagaggaagttggacttttccattcccgcaacacagttgaaataaaggtgttgttgtaaacttagatttatgtttcctttctaaataccaca |
22072482 |
T |
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Target: scaffold0028 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 34 - 328
Target Start/End: Original strand, 118237 - 118531
Alignment:
| Q |
34 |
ctaccaattcggtgacatgtctgtccttgtatcctcatggttggtggacctctacctttagtaaccttatcatcaaatttcatgcctggtgaactaaatt |
133 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| ||||| |||||||| |
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| T |
118237 |
ctaccaattctatgacatgtctgtccttgtatcctcatagttggtggacctctaccttttgcaaccttatcatcaaatttcattcctggagaactaaacg |
118336 |
T |
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| Q |
134 |
aaaacattgaattatacattcttgtgttttgctggaaatttttggtatcttctgattgatgatcaaagagtagatgttgaagtacaggaggaggttgtct |
233 |
Q |
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|||||||||||||||||||||||||| ||| || || ||||| ||||||| |||| ||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
118337 |
caaacattgaattatacattcttgtgtgttgttgaaattttttactatcttcggattcttgatcaaagagtagatgtttaagcacaggaggaggttgtct |
118436 |
T |
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| Q |
234 |
tagaagaggaagttggacttttccattcccgcaacacagttgaaataaaggtgttgttgtagacttagatttatgtttcctttctaaataccaca |
328 |
Q |
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||| ||||| |||||||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
118437 |
taggagaggtagttggacctttccatctccgcaacacagttgaaataagggtgtttctgtagacttagatttatgtttcctttctagataccaca |
118531 |
T |
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