View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5108_low_2 (Length: 246)

Name: NF5108_low_2
Description: NF5108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5108_low_2
NF5108_low_2
[»] chr5 (29 HSPs)
chr5 (1-230)||(499490-499719)
chr5 (161-230)||(12459920-12459989)
chr5 (156-223)||(31208561-31208628)
chr5 (163-230)||(32849260-32849327)
chr5 (163-199)||(14706205-14706241)
chr5 (161-203)||(14331475-14331517)
chr5 (161-203)||(42034169-42034211)
chr5 (168-229)||(38033953-38034014)
chr5 (156-195)||(14932413-14932452)
chr5 (161-228)||(36639606-36639673)
chr5 (161-200)||(39594919-39594958)
chr5 (161-199)||(17369316-17369354)
chr5 (161-199)||(36796626-36796664)
chr5 (161-199)||(41419432-41419470)
chr5 (161-199)||(41534551-41534589)
chr5 (161-227)||(41830937-41831003)
chr5 (161-203)||(42646999-42647041)
chr5 (161-230)||(5377116-5377185)
chr5 (154-203)||(14980618-14980667)
chr5 (173-230)||(15015926-15015982)
chr5 (161-230)||(32194011-32194080)
chr5 (161-202)||(34205351-34205392)
chr5 (156-228)||(10638449-10638521)
chr5 (163-203)||(10771809-10771849)
chr5 (163-223)||(19177534-19177594)
chr5 (162-230)||(21782576-21782644)
chr5 (164-200)||(22209746-22209782)
chr5 (156-200)||(32197845-32197889)
chr5 (161-197)||(35299880-35299916)
[»] chr2 (28 HSPs)
chr2 (161-230)||(22878180-22878249)
chr2 (1-99)||(35183200-35183298)
chr2 (161-230)||(31982381-31982450)
chr2 (3-99)||(35177245-35177341)
chr2 (1-92)||(35054366-35054457)
chr2 (161-221)||(15370242-15370302)
chr2 (161-228)||(13866962-13867029)
chr2 (163-230)||(28803451-28803518)
chr2 (21-96)||(35045397-35045472)
chr2 (161-230)||(8017516-8017585)
chr2 (161-230)||(30331834-30331902)
chr2 (161-229)||(18884950-18885018)
chr2 (161-200)||(18179061-18179100)
chr2 (161-200)||(27317491-27317530)
chr2 (163-230)||(40158800-40158867)
chr2 (161-203)||(1830148-1830190)
chr2 (161-203)||(4350799-4350841)
chr2 (161-223)||(7103392-7103454)
chr2 (161-219)||(28810371-28810429)
chr2 (161-203)||(30990358-30990400)
chr2 (161-203)||(40759269-40759311)
chr2 (161-199)||(40837356-40837394)
chr2 (162-199)||(40059381-40059418)
chr2 (162-199)||(40085281-40085318)
chr2 (153-201)||(27317018-27317066)
chr2 (165-225)||(33931493-33931553)
chr2 (21-97)||(35105236-35105312)
chr2 (167-199)||(41516949-41516981)
[»] chr8 (16 HSPs)
chr8 (162-230)||(4560584-4560652)
chr8 (161-230)||(2487927-2487996)
chr8 (161-229)||(38602411-38602478)
chr8 (161-200)||(30251373-30251412)
chr8 (161-208)||(32976477-32976524)
chr8 (156-203)||(35928644-35928691)
chr8 (168-227)||(43385725-43385784)
chr8 (161-199)||(2606162-2606200)
chr8 (161-223)||(14926901-14926963)
chr8 (161-203)||(18331823-18331865)
chr8 (176-230)||(24326113-24326167)
chr8 (173-230)||(30191072-30191129)
chr8 (161-202)||(43368619-43368660)
chr8 (173-229)||(3953885-3953941)
chr8 (163-223)||(12361283-12361343)
chr8 (161-221)||(41620211-41620270)
[»] chr7 (25 HSPs)
chr7 (164-230)||(529444-529510)
chr7 (161-229)||(1418502-1418570)
chr7 (163-230)||(3836604-3836671)
chr7 (161-199)||(30812251-30812289)
chr7 (161-230)||(4970711-4970779)
chr7 (161-230)||(30748953-30749022)
chr7 (161-201)||(11619077-11619117)
chr7 (161-229)||(30751602-30751670)
chr7 (167-199)||(32730173-32730205)
chr7 (161-200)||(19302482-19302521)
chr7 (161-200)||(33266405-33266444)
chr7 (157-192)||(40598400-40598435)
chr7 (59-97)||(25638228-25638266)
chr7 (163-201)||(33673188-33673226)
chr7 (156-198)||(34036031-34036073)
chr7 (161-199)||(47046027-47046065)
chr7 (162-203)||(7513668-7513709)
chr7 (163-220)||(8427105-8427162)
chr7 (163-200)||(9210933-9210970)
chr7 (161-230)||(17942153-17942222)
chr7 (161-230)||(22387815-22387884)
chr7 (161-230)||(33894709-33894778)
chr7 (164-228)||(425745-425809)
chr7 (163-203)||(2727279-2727319)
chr7 (161-217)||(29363603-29363659)
[»] chr1 (29 HSPs)
chr1 (161-224)||(6292580-6292643)
chr1 (163-230)||(51929383-51929450)
chr1 (164-230)||(6279481-6279547)
chr1 (164-226)||(10199330-10199392)
chr1 (161-218)||(24460320-24460377)
chr1 (173-229)||(31517671-31517727)
chr1 (161-229)||(32958720-32958788)
chr1 (152-219)||(4622186-4622253)
chr1 (161-228)||(12564418-12564485)
chr1 (161-200)||(41505786-41505825)
chr1 (163-229)||(5157155-5157221)
chr1 (153-199)||(15784909-15784955)
chr1 (163-193)||(18403128-18403158)
chr1 (161-207)||(24502741-24502787)
chr1 (152-202)||(38246974-38247024)
chr1 (161-207)||(48282227-48282273)
chr1 (161-226)||(11217933-11217998)
chr1 (161-230)||(32515360-32515429)
chr1 (161-230)||(33723301-33723370)
chr1 (169-226)||(37593611-37593668)
chr1 (161-198)||(50644174-50644211)
chr1 (162-230)||(6659762-6659830)
chr1 (163-203)||(18327067-18327107)
chr1 (161-229)||(23373232-23373300)
chr1 (158-230)||(27807197-27807269)
chr1 (161-193)||(28262490-28262522)
chr1 (167-203)||(28837278-28837314)
chr1 (163-199)||(29793619-29793655)
chr1 (162-218)||(30259406-30259462)
[»] chr6 (18 HSPs)
chr6 (161-231)||(30536884-30536954)
chr6 (163-230)||(26559160-26559227)
chr6 (161-231)||(33068521-33068591)
chr6 (161-225)||(35070386-35070450)
chr6 (161-200)||(20861617-20861656)
chr6 (161-200)||(21405073-21405112)
chr6 (161-219)||(2457034-2457092)
chr6 (161-203)||(4308886-4308928)
chr6 (161-198)||(9202904-9202941)
chr6 (161-230)||(13908322-13908391)
chr6 (161-194)||(31776191-31776224)
chr6 (161-230)||(32205932-32206001)
chr6 (161-198)||(33027706-33027743)
chr6 (161-198)||(33089620-33089657)
chr6 (168-228)||(7351597-7351657)
chr6 (163-203)||(12111076-12111116)
chr6 (161-201)||(31624371-31624411)
chr6 (161-193)||(35070573-35070605)
[»] chr4 (24 HSPs)
chr4 (164-229)||(1017111-1017176)
chr4 (167-230)||(18628478-18628541)
chr4 (161-200)||(27043749-27043788)
chr4 (158-219)||(1133021-1133082)
chr4 (163-203)||(32420979-32421019)
chr4 (163-223)||(37636107-37636167)
chr4 (161-200)||(17822784-17822823)
chr4 (156-199)||(24193645-24193688)
chr4 (161-200)||(42403942-42403981)
chr4 (161-200)||(49940086-49940125)
chr4 (162-200)||(15173223-15173261)
chr4 (188-230)||(22471356-22471398)
chr4 (161-203)||(22662170-22662212)
chr4 (161-203)||(22666649-22666691)
chr4 (161-203)||(28259382-28259424)
chr4 (161-230)||(9720573-9720642)
chr4 (162-203)||(32831438-32831479)
chr4 (161-230)||(39178185-39178254)
chr4 (168-229)||(50298598-50298659)
chr4 (161-202)||(53034718-53034759)
chr4 (167-216)||(53138099-53138148)
chr4 (163-207)||(3639089-3639133)
chr4 (158-202)||(19305036-19305080)
chr4 (162-230)||(44320031-44320099)
[»] chr3 (20 HSPs)
chr3 (161-230)||(50211817-50211886)
chr3 (161-219)||(21872214-21872272)
chr3 (161-230)||(20210847-20210916)
chr3 (161-198)||(26990144-26990181)
chr3 (161-230)||(30573834-30573902)
chr3 (161-230)||(47903999-47904068)
chr3 (156-223)||(1288763-1288828)
chr3 (167-223)||(22667492-22667548)
chr3 (167-223)||(22724131-22724187)
chr3 (156-200)||(25447159-25447203)
chr3 (161-200)||(16072960-16072999)
chr3 (159-229)||(2923561-2923631)
chr3 (160-229)||(3775769-3775838)
chr3 (163-200)||(26911703-26911740)
chr3 (161-230)||(33965407-33965476)
chr3 (161-230)||(45590733-45590802)
chr3 (161-201)||(2081002-2081042)
chr3 (162-230)||(20669700-20669768)
chr3 (164-200)||(33405114-33405150)
chr3 (161-201)||(41155280-41155320)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 499490 - 499719
Alignment:
Q  1 caataaggtcatcaacaaagcctgagaatttatgacccagtgaatttattacttcttgaacaattttttcaatctcttcaaactcaggcctgaaagagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499490 caataaggtcatcaacaaagcctgagaatttatgacccagtgaatttattacttcttgaacaattttttcaatctcttcaaactcaggcctgaaagagaa 499589  T
Q  101 tgggaagttagatgactaagtcatgacctaagaaaagaaggnnnnnnncatatatgagtgtgtttggattgacttatttgagcttacctactgacataag 200  Q
     ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499590 cgggaagttagatgactaagtcatgacctaagaaaagaaggaaaaaaacatatatgagtgtgtttggattgacttatttgagcttacctactgacataag 499689  T
Q  201 cacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||||||||||||||||||||||||    
T  499690 cacctgttaggctgtttgggagaacttatg 499719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 12459920 - 12459989
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||||||||||||||  ||||| || ||||||||||||||||| || |||||||||||||| ||||    
T  12459920 tgtttggattgacttatttcggcttatctgctgacataagcacctgtgagactgtttgggagaacctatg 12459989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 31208628 - 31208561
Alignment:
Q  156 gagtgtgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggaga 223  Q
    |||| ||||||||||||||||||||| || | ||||||||||||||||| || || ||||||||||||    
T  31208628 gagtctgtttggattgacttatttgaactgaactactgacataagcacccgtgagactgtttgggaga 31208561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 32849327 - 32849260
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||| |||||||||||| |||||| |||||  ||||||||| ||| ||||||||||||||||||||||    
T  32849327 tttgaattgacttatttaagcttatctactatcataagcacttgtgaggctgtttgggagaacttatg 32849260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 14706205 - 14706241
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataa 199  Q
    |||||||||||||||||||||||||||||||||||||    
T  14706205 tttggattgacttatttgagcttacctactgacataa 14706241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 14331517 - 14331475
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcac 203  Q
    |||||||||||||||||||||||||| |||||| |||||||||    
T  14331517 tgtttggattgacttatttgagcttatctactgtcataagcac 14331475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 42034211 - 42034169
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcac 203  Q
    ||||||||||  |||||||||||||||||||||||||||||||    
T  42034211 tgtttggattagcttatttgagcttacctactgacataagcac 42034169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 38033953 - 38034014
Alignment:
Q  168 attgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttat 229  Q
    ||||||||||||||||||  |||||| ||||||||||||| || |||||||| |||| ||||    
T  38033953 attgacttatttgagcttttctactggcataagcacctgtgagactgtttggaagaagttat 38034014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 195
Target Start/End: Complemental strand, 14932452 - 14932413
Alignment:
Q  156 gagtgtgtttggattgacttatttgagcttacctactgac 195  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  14932452 gagtatgtttggattgacttatttgagcttatctactgac 14932413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 36639673 - 36639606
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaactta 228  Q
    ||||||||||| ||||||||| |||||||| | |||||||||| | | || ||||||| |||||||||    
T  36639673 tgtttggattgtcttatttgaacttacctatttacataagcacttataagactgtttgagagaactta 36639606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 39594958 - 39594919
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataag 200  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  39594958 tgtttggattgacttatttgagcttatctaccgacataag 39594919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 17369354 - 17369316
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataa 199  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  17369354 tgtttggattgacttatttgaacttatctactgacataa 17369316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 36796626 - 36796664
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataa 199  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  36796626 tgtttggattgacttatttgagcttatctaatgacataa 36796664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 41419470 - 41419432
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataa 199  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  41419470 tgtttggattgacttatttgagctaatctactgacataa 41419432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 41534589 - 41534551
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataa 199  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  41534589 tgtttggattgacttatttgagctaatctactgacataa 41534551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 41831003 - 41830937
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaactt 227  Q
    |||||||||||||||||||||| ||   ||||| ||||| || |||| || ||||||||||||||||    
T  41831003 tgtttggattgacttatttgagtttgtgtactgtcataaacatctgtgagactgtttgggagaactt 41830937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 42647041 - 42646999
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcac 203  Q
    ||||||||||| |||||||||||||| |||||||||| |||||    
T  42647041 tgtttggattggcttatttgagcttatctactgacattagcac 42646999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 5377116 - 5377185
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||| |||||| |||||||||||||| ||| |||||||||||| ||| || ||||| | || ||||||||    
T  5377116 tgttcggattggcttatttgagcttatctattgacataagcacttgtaagactgttagcgataacttatg 5377185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 14980667 - 14980618
Alignment:
Q  154 atgagtgtgtttggattgacttatttgagcttacctactgacataagcac 203  Q
    |||||| | |||||| ||||||||||||||||| |||||| |||||||||    
T  14980667 atgagtttatttggaatgacttatttgagcttatctactggcataagcac 14980618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 15015982 - 15015926
Alignment:
Q  173 cttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||||||||| ||||||||||||||   ||| || |||||||||||||||||||    
T  15015982 cttatttgagcttatctactgacataagc-tttgtgagactgtttgggagaacttatg 15015926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 32194011 - 32194080
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||||||||||||||||||||| ||| ||| ||||| || ||| || |||||   |||||||||||    
T  32194011 tgtttggattgacttatttgagcttaactaatgatataagaacttgtgagactgttatagagaacttatg 32194080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 34205392 - 34205351
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagca 202  Q
    ||||||||||||||||||||| ||||  ||||||||||||||    
T  34205392 tgtttggattgacttatttgaacttatttactgacataagca 34205351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 10638449 - 10638521
Alignment:
Q  156 gagtgtgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaactta 228  Q
    |||| ||||||||||||||||||| || ||| ||||  |||||||||| ||| || || ||||||||| ||||    
T  10638449 gagtctgtttggattgacttatttaagattatctaccaacataagcacttgtaagactatttgggagagctta 10638521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 10771809 - 10771849
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcac 203  Q
    ||||||||| |||||||||||||| |||||| |||||||||    
T  10771809 tttggattggcttatttgagcttatctactggcataagcac 10771849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 19177594 - 19177534
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggaga 223  Q
    |||||||||||||||||||| ||||||| || ||| | ||| ||| || ||||||||||||    
T  19177594 tttggattgacttatttgagtttacctattggcatgaacacttgtgagactgtttgggaga 19177534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 21782576 - 21782644
Alignment:
Q  162 gtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||| |||||||||||||  ||| |||||| ||||| ||| ||| |||||||||| |||| ||||||    
T  21782576 gtttggcttgacttatttgaaattatctactggcataaacacttgtgaggctgtttgagagagcttatg 21782644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 22209746 - 22209782
Alignment:
Q  164 ttggattgacttatttgagcttacctactgacataag 200  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  22209746 ttggattgacttatttgagcttatctactggcataag 22209782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 32197889 - 32197845
Alignment:
Q  156 gagtgtgtttggattgacttatttgagcttacctactgacataag 200  Q
    |||| ||||||||||||||| |||||| ||| |||||||||||||    
T  32197889 gagtctgtttggattgacttttttgagtttatctactgacataag 32197845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 35299916 - 35299880
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacat 197  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  35299916 tgtttggattgacttatttgagcttatctattgacat 35299880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 22878249 - 22878180
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||||||||||||||||||||| | |||||||||||||| ||| || |||||||||||| ||||||    
T  22878249 tgtttggattgacttatttgagcttatccactgacataagcacttgtgagactgtttgggagaccttatg 22878180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 35183200 - 35183298
Alignment:
Q  1 caataaggtcatcaacaaagcctgagaatttatgacccagtgaatttattacttcttgaacaattttttcaatctcttcaaactcaggcctgaaagaga 99  Q
    |||||||||||||| |||| ||  ||||||||||||||| || ||||||||| || |||||||| || | |||||||  |||||| |||||||||||||    
T  35183200 caataaggtcatcagcaaaccccaagaatttatgacccattgtatttattacctcctgaacaatattcttaatctctcgaaactctggcctgaaagaga 35183298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 31982450 - 31982381
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||| ||||||||||| |||||||||||| |||||||||||||| |  || ||||||||||||||||    
T  31982450 tgtttgggttgacttatttaagcttacctactaacataagcacctgtgacactatttgggagaacttatg 31982381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 35177245 - 35177341
Alignment:
Q  3 ataaggtcatcaacaaagcctgagaatttatgacccagtgaatttattacttcttgaacaattttttcaatctcttcaaactcaggcctgaaagaga 99  Q
    |||||||||||| |||| ||||||||||||||||||| ||  |||||||| |  |||||||| | || |||||||  |||||| |||||||||||||    
T  35177245 ataaggtcatcagcaaaccctgagaatttatgacccaatgtttttattacctgctgaacaatatcttgaatctctcgaaactctggcctgaaagaga 35177341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 35054366 - 35054457
Alignment:
Q  1 caataaggtcatcaacaaagcctgagaatttatgacccagtgaatttattacttcttgaacaattttttcaatctcttcaaactcaggcctg 92  Q
    |||||||||||||| |||| ||||||||||||||||||| ||  ||||| || || |||||||| |||||||| |||  |||||| ||||||    
T  35054366 caataaggtcatcagcaaaccctgagaatttatgacccaatgtttttatcacctcctgaacaatattttcaatttctcgaaactctggcctg 35054457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 15370242 - 15370302
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttggga 221  Q
    |||||||||||||||||||||||||| |||||| ||||||||  ||| || ||||||||||    
T  15370242 tgtttggattgacttatttgagcttatctactggcataagcatttgtgagactgtttggga 15370302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 13867029 - 13866962
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaactta 228  Q
    ||||||||||||| |||||||||||| |||||| ||||| ||| ||| || ||||||| |||||||||    
T  13867029 tgtttggattgacctatttgagcttatctactgccataaacacttgtgagactgtttgagagaactta 13866962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 28803451 - 28803518
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||||||||||||||||||| |||| | ||||||||| ||| || ||||||| |||||| ||||    
T  28803451 tttggattgacttatttgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatg 28803518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 35045397 - 35045472
Alignment:
Q  21 cctgagaatttatgacccagtgaatttattacttcttgaacaattttttcaatctcttcaaactcaggcctgaaag 96  Q
    ||||||||||||||| ||| |   ||||| ||| |||||||||||||||||||||||  |||||| ||||||||||    
T  35045397 cctgagaatttatgatccaatttttttatcactgcttgaacaattttttcaatctctgtaaactctggcctgaaag 35045472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 8017585 - 8017516
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||||||||||||||||| ||| ||| |||||||||||| |||  |  | ||||||||||||||||    
T  8017585 tgtttggattgacttatttgaggttatctattgacataagcacttgtgcgattatttgggagaacttatg 8017516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 30331902 - 30331834
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||||||||||||| |||||| |||||||||||||    ||| || |||||||||||||||||||    
T  30331902 tgtttggattgacttatttcagcttatctactgacataag-ttttgtgagactgtttgggagaacttatg 30331834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 18885018 - 18884950
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttat 229  Q
    ||||||||| |||||||| |||| || ||| ||||||||| || ||| ||||||||||||||| |||||    
T  18885018 tgtttggatcgacttattcgagcgtatctattgacataagaacttgtaaggctgtttgggagagcttat 18884950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 18179100 - 18179061
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataag 200  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  18179100 tgtttggattgacttatttgagcttatctactaacataag 18179061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 27317530 - 27317491
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataag 200  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  27317530 tgtttggattgacttatttgagcttatctaccgacataag 27317491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 40158867 - 40158800
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||| ||||||||||| || ||||||||||||| || ||| || ||| ||||| |||||||||    
T  40158867 tttggattggcttatttgagcatatctactgacataagaacttgtgagactgattgggggaacttatg 40158800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 1830190 - 1830148
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcac 203  Q
    |||||||||||||||||||||| |||  |||||||||||||||    
T  1830190 tgtttggattgacttatttgagtttatttactgacataagcac 1830148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 4350841 - 4350799
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcac 203  Q
    ||||||||||| |||||||||||||  ||||||||||||||||    
T  4350841 tgtttggattggcttatttgagcttctctactgacataagcac 4350799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 7103392 - 7103454
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggaga 223  Q
    |||||||||||||||||||||| ||| ||| |||||| ||||| ||| ||  |||||||||||    
T  7103392 tgtttggattgacttatttgagtttatctattgacatgagcacatgtgagattgtttgggaga 7103454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 28810371 - 28810429
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgg 219  Q
    |||||||||||||||||||||||||  ||| || ||||| ||| ||| |||||||||||    
T  28810371 tgtttggattgacttatttgagcttctctattggcataaacacttgtgaggctgtttgg 28810429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 30990358 - 30990400
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcac 203  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||    
T  30990358 tgtttggattggcttatttgagcttatctactaacataagcac 30990400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 40759311 - 40759269
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcac 203  Q
    ||||||||||| |||||||||||||| ||| ||||||||||||    
T  40759311 tgtttggattgccttatttgagcttatctattgacataagcac 40759269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 40837356 - 40837394
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataa 199  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  40837356 tgtttggattggcttatttgagcttatctactgacataa 40837394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 40059381 - 40059418
Alignment:
Q  162 gtttggattgacttatttgagcttacctactgacataa 199  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  40059381 gtttggattgacttatttgagtttatctactgacataa 40059418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 40085281 - 40085318
Alignment:
Q  162 gtttggattgacttatttgagcttacctactgacataa 199  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  40085281 gtttggattgacttatttgagtttatctactgacataa 40085318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 27317018 - 27317066
Alignment:
Q  153 tatgagtgtgtttggattgacttatttgagcttacctactgacataagc 201  Q
    ||||||| ||||||||||||||||||| |||||| ||| || |||||||    
T  27317018 tatgagtctgtttggattgacttattttagcttatctattggcataagc 27317066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 33931493 - 33931553
Alignment:
Q  165 tggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaac 225  Q
    |||||| ||||||||||||||||||| |  ||||||||| ||| |  ||||||||||||||    
T  33931493 tggattaacttatttgagcttacctaatagcataagcacttgtgactctgtttgggagaac 33931553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 35105236 - 35105312
Alignment:
Q  21 cctgagaatttatgacccagtgaatttattacttcttgaacaattttttcaatctcttcaaactcaggcctgaaaga 97  Q
    |||||||||||||||  || ||  ||||||||| | |||||||||||||| ||||||   ||||| |||||||||||    
T  35105236 cctgagaatttatgattcaatgtttttattactgcctgaacaattttttcgatctctgtgaactctggcctgaaaga 35105312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 41516949 - 41516981
Alignment:
Q  167 gattgacttatttgagcttacctactgacataa 199  Q
    |||||||||||||||||||||||||| ||||||    
T  41516949 gattgacttatttgagcttacctactcacataa 41516981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 4560652 - 4560584
Alignment:
Q  162 gtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||||||||||||||||||| ||| |||||||||||| ||| ||| ||||||| ||||||||||    
T  4560652 gtttggattgacttatttgagcttatctattgacataagcacttgtgaggttgtttggaagaacttatg 4560584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 2487927 - 2487996
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||||| |||||||||| | | |||||||||||||||| ||| || |||||||||||||||||||    
T  2487927 tgtttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttatg 2487996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 38602478 - 38602411
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttat 229  Q
    |||||||||||||||||||||||||| |||||||||||||    ||| |||||||||||||||||||||    
T  38602478 tgtttggattgacttatttgagcttatctactgacataag-ttttgtgaggctgtttgggagaacttat 38602411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 30251373 - 30251412
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataag 200  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  30251373 tgtttggattggcttatttgagcttatctactgacataag 30251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 32976524 - 32976477
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgtt 208  Q
    ||||||||||  |||||||||||||| |||||||||||||||| ||||    
T  32976524 tgtttggattcccttatttgagcttatctactgacataagcacttgtt 32976477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 35928644 - 35928691
Alignment:
Q  156 gagtgtgtttggattgacttatttgagcttacctactgacataagcac 203  Q
    |||| ||||||||||| ||||||| |||||| ||||||||||||||||    
T  35928644 gagtctgtttggattgtcttattttagcttatctactgacataagcac 35928691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 43385784 - 43385725
Alignment:
Q  168 attgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaactt 227  Q
    |||||||||| | |||||| |||||| ||||||||||||| || |||||||| |||||||    
T  43385784 attgacttatctaagcttatctactggcataagcacctgtgagactgtttggaagaactt 43385725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 2606200 - 2606162
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataa 199  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  2606200 tgtttggattgacttattcgagcttatctactgacataa 2606162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 14926901 - 14926963
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggaga 223  Q
    ||||||||||||||||||||| ||||  ||||| ||||||||| ||| || ||||||| ||||    
T  14926901 tgtttggattgacttatttgaacttatttactggcataagcacttgtgagactgtttgagaga 14926963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 18331865 - 18331823
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcac 203  Q
    ||||||||||||||||||||| |||| ||||| ||||||||||    
T  18331865 tgtttggattgacttatttgatcttatctactaacataagcac 18331823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 24326167 - 24326113
Alignment:
Q  176 atttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||||| |||||| ||||||||| ||| || |||||||||||| ||||||    
T  24326167 atttgagcttatctactggcataagcacttgtgagactgtttgggagagcttatg 24326113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 30191072 - 30191129
Alignment:
Q  173 cttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||||| ||| ||| || ||||||||| |||||| |||||||||||| ||||||    
T  30191072 cttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttatg 30191129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 43368619 - 43368660
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagca 202  Q
    ||||||||||||||||||||| |||| ||||| |||||||||    
T  43368619 tgtttggattgacttatttgatcttatctactaacataagca 43368660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 3953941 - 3953885
Alignment:
Q  173 cttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttat 229  Q
    ||||||||||| || |||||| ||||||||| ||| |  ||||||||||||||||||    
T  3953941 cttatttgagcctatctactggcataagcacttgtgaaactgtttgggagaacttat 3953885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 12361343 - 12361283
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggaga 223  Q
    ||||||||||||||||||| |||| ||||||| ||||| || |||||| || |||| ||||    
T  12361343 tttggattgacttatttgaacttatctactgatataagtacttgttagactctttgagaga 12361283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 41620211 - 41620270
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttggga 221  Q
    ||||||||| || |||||||| ||||||||||||||| | ||||||| |||||||| ||||    
T  41620211 tgtttggat-gatttatttgaacttacctactgacatgaacacctgtgaggctgttaggga 41620270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 529510 - 529444
Alignment:
Q  164 ttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||||||||||||||||| |||||| ||||| ||| ||| ||||| ||||||||||||||||    
T  529510 ttggattgacttatttgagcttatctactggcataaacacttgtgaggctatttgggagaacttatg 529444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 1418570 - 1418502
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttat 229  Q
    |||||||||||||||||||||||||| |||||| ||||||||| | | |||||||||| |||| |||||    
T  1418570 tgtttggattgacttatttgagcttatctactggcataagcacttatgaggctgtttgtgagagcttat 1418502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 3836604 - 3836671
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||| |||||||||||||| |||||| | ||||||| ||| |  |||||||||||||||||||    
T  3836604 tttggattgccttatttgagcttatctactggcttaagcacttgtgaaactgtttgggagaacttatg 3836671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 30812289 - 30812251
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataa 199  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  30812289 tgtttggattgacttatttgagtttacctactgacataa 30812251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 4970711 - 4970779
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||||||||||||||||||||| ||  |||||||||  | ||| || |||||||||||||||||||    
T  4970711 tgtttggattgacttatttgagcttatctcgtgacataag-tcttgtgagactgtttgggagaacttatg 4970779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 30748953 - 30749022
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||| ||||| ||||||||||||| ||||||||||||||   ||| || ||||||| |||||||||||    
T  30748953 tgtttgaattgagttatttgagcttatctactgacataagccaatgtgagactgtttgagagaacttatg 30749022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 11619077 - 11619117
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagc 201  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  11619077 tgtttggattggcttatttgagcttatctactgacataagc 11619117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 30751670 - 30751602
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttat 229  Q
    |||||||||| |||||||| | |||| |||||||||||||||| |||  | |||||||||||| |||||    
T  30751670 tgtttggattaacttatttaaacttatctactgacataagcacttgtgcgactgtttgggagagcttat 30751602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 32730173 - 32730205
Alignment:
Q  167 gattgacttatttgagcttacctactgacataa 199  Q
    |||||||||||||||||||||||||||||||||    
T  32730173 gattgacttatttgagcttacctactgacataa 32730205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 19302482 - 19302521
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataag 200  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  19302482 tgtttgaattgacttatttgagcttatctactgacataag 19302521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 33266405 - 33266444
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataag 200  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  33266405 tgtttggattgacttatttgagcttatctaccgacataag 33266444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 40598400 - 40598435
Alignment:
Q  157 agtgtgtttggattgacttatttgagcttacctact 192  Q
    |||||||||||||||||||||||||||||| |||||    
T  40598400 agtgtgtttggattgacttatttgagcttatctact 40598435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 25638266 - 25638228
Alignment:
Q  59 aacaattttttcaatctcttcaaactcaggcctgaaaga 97  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  25638266 aacaattttttcaatctcatcaaactctggcctgaaaga 25638228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 33673226 - 33673188
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagc 201  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  33673226 tttggattgactcatttgagcttatctactgacataagc 33673188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 34036073 - 34036031
Alignment:
Q  156 gagtgtgtttggattgacttatttgagcttacctactgacata 198  Q
    |||| |||||| ||||||||||||||||||| |||||||||||    
T  34036073 gagtctgtttgaattgacttatttgagcttatctactgacata 34036031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 47046027 - 47046065
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataa 199  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  47046027 tgtttggattgacttatttgtgcttatctactgacataa 47046065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 7513709 - 7513668
Alignment:
Q  162 gtttggattgacttatttgagcttacctactgacataagcac 203  Q
    ||||| ||||||||||||||||||| |||||| |||||||||    
T  7513709 gtttgaattgacttatttgagcttatctactggcataagcac 7513668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 8427162 - 8427105
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttggg 220  Q
    |||||||||| ||||||||||||| ||||| ||||||| || ||| || |||||||||    
T  8427162 tttggattgatttatttgagcttatctactaacataagtacttgtgagactgtttggg 8427105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 9210970 - 9210933
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataag 200  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  9210970 tttggattgacttatttgagcttatctactgatataag 9210933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 17942222 - 17942153
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||| |||||| |||||||||| ||||||  |||| ||||||| || |||| || |||||||||||    
T  17942222 tgtttggaatgacttgtttgagcttatctactgcaataaacacctgtgagactgtctgagagaacttatg 17942153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 22387815 - 22387884
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||||||||||| | || ||||  ||||||||||| ||| ||| || |||||||||||| ||||||    
T  22387815 tgtttggattgacttactagaacttatttactgacataaacacgtgtgagactgtttgggagagcttatg 22387884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 33894778 - 33894709
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||||  |||||||||||||| | | |||||||||||| ||| || ||||||| |||| ||||||    
T  33894778 tgtttggattagcttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttatg 33894709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 425745 - 425809
Alignment:
Q  164 ttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaactta 228  Q
    |||||||| |||||||||| ||| |||||| ||||||||| |||    |||||||||||||||||    
T  425745 ttggattggcttatttgagattatctactggcataagcacatgtggcactgtttgggagaactta 425809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 2727279 - 2727319
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcac 203  Q
    |||||||||| |||||||| |||| ||||||||||||||||    
T  2727279 tttggattgatttatttgaacttatctactgacataagcac 2727319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 29363659 - 29363603
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgttt 217  Q
    ||||||||||| ||||||||| |||| ||||| |||||||||| ||| || ||||||    
T  29363659 tgtttggattggcttatttgaacttatctactaacataagcacttgtgagactgttt 29363603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 6292643 - 6292580
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaa 224  Q
    |||||||||||||||||||||||||| |||||||||||||||| | | ||  ||||||||||||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagcacttttgagattgtttgggagaa 6292580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 51929383 - 51929450
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| |  ||||||  |||||||||||    
T  51929383 tttggattgacttttttgagcttatctactgacataagcacctgtgacactgtttaagagaacttatg 51929450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 6279547 - 6279481
Alignment:
Q  164 ttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||| |||||||||| |||||| |||||||||||||||| |||  ||||||||| |||| ||||||    
T  6279547 ttggagtgacttatttcagcttaactactgacataagcacttgtgtggctgtttgagagagcttatg 6279481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 10199330 - 10199392
Alignment:
Q  164 ttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaact 226  Q
    ||||||||||||||||||||||| ||||| |||||||||| ||| |  || ||||||||||||    
T  10199330 ttggattgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaact 10199392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 24460320 - 24460377
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttg 218  Q
    ||||||||||||||||||||| |||| |||||||||| ||||| ||| || |||||||    
T  24460320 tgtttggattgacttatttgaacttatctactgacatgagcacttgtgagactgtttg 24460377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 31517671 - 31517727
Alignment:
Q  173 cttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttat 229  Q
    ||||||||||||||  ||||| ||||||||| ||| || ||||||||||||||||||    
T  31517671 cttatttgagcttatttactggcataagcacttgtgagactgtttgggagaacttat 31517727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 32958788 - 32958720
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttat 229  Q
    ||||| |||||||||||||||||||| |||||| ||||||||| ||| ||| | ||| ||||| |||||    
T  32958788 tgtttagattgacttatttgagcttatctactgtcataagcacttgtgaggttattttggagagcttat 32958720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 4622253 - 4622186
Alignment:
Q  152 atatgagtgtgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgg 219  Q
    |||||| | |||||| |||||||||||| |||||| ||| ||||||||| || |||||| ||||||||    
T  4622253 atatgaatctgtttgaattgacttatttaagcttaactaatgacataagaacttgttagactgtttgg 4622186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 12564418 - 12564485
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaactta 228  Q
    |||||| |||||||||||||||||||  |||||| |||||||| |||  | |||||||||||| ||||    
T  12564418 tgtttgaattgacttatttgagcttatatactgatataagcacttgtgtgactgtttgggagagctta 12564485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 41505825 - 41505786
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataag 200  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  41505825 tgtttggattggcttatttgagcttatctactgacataag 41505786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 5157221 - 5157155
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttat 229  Q
    ||||||||||||||||||| |||| |||| ||||||| ||| ||| |  |||||||||||| |||||    
T  5157221 tttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttat 5157155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 15784955 - 15784909
Alignment:
Q  153 tatgagtgtgtttggattgacttatttgagcttacctactgacataa 199  Q
    |||| |||||||||||||||||||||||||||||  ||||| |||||    
T  15784955 tatgggtgtgtttggattgacttatttgagcttatttactgtcataa 15784909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 193
Target Start/End: Original strand, 18403128 - 18403158
Alignment:
Q  163 tttggattgacttatttgagcttacctactg 193  Q
    |||||||||||||||||||||||||||||||    
T  18403128 tttggattgacttatttgagcttacctactg 18403158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 24502741 - 24502787
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgt 207  Q
    |||||||||  ||||| ||||||||| ||||||||||||||||||||    
T  24502741 tgtttggatgaacttaattgagcttatctactgacataagcacctgt 24502787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 38246974 - 38247024
Alignment:
Q  152 atatgagtgtgtttggattgacttatttgagcttacctactgacataagca 202  Q
    |||||||| || |||||| |||||||||||||||| |||||||| ||||||    
T  38246974 atatgagtttgcttggatagacttatttgagcttatctactgacgtaagca 38247024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 48282273 - 48282227
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgt 207  Q
    ||||||| |||||| |||||||||||||||||| |||||| ||||||    
T  48282273 tgtttgggttgactaatttgagcttacctactggcataagtacctgt 48282227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 11217933 - 11217998
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaact 226  Q
    ||||||||  |||||||||||||| | |||||||||| ||||| ||| || | |||||||||||||    
T  11217933 tgtttggaccgacttatttgagctaatctactgacatgagcacttgtgagacggtttgggagaact 11217998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 32515360 - 32515429
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||||  | |||||||| ||| ||||| |||||||||| ||| || |||||||||||| ||||||    
T  32515360 tgtttggattagcatatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatg 32515429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 33723301 - 33723370
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||||||||||||||| |||| |||||  ||||| ||| ||| || ||| |||||| ||||||||    
T  33723301 tgtttggattgacttatttgaacttatctactaccataaacacttgtgagactgcttgggaaaacttatg 33723370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 37593611 - 37593668
Alignment:
Q  169 ttgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaact 226  Q
    ||||||||||||||||||  ||||| ||||| ||| |||||| |||||||||| ||||    
T  37593611 ttgacttatttgagcttatatactggcataaacacttgttagactgtttgggaaaact 37593668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 50644174 - 50644211
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacata 198  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  50644174 tgtttggattgacttatttgagcttatctactaacata 50644211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 6659830 - 6659762
Alignment:
Q  162 gtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||||||||||||| |||||| |||||  ||||||||| ||| || || ||||||| | ||||||    
T  6659830 gtttggattgacttattttagcttatctactagcataagcacttgtgagactatttgggatagcttatg 6659762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 18327067 - 18327107
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcac 203  Q
    ||||||||| |||||||||||||| |||||| |||||||||    
T  18327067 tttggattggcttatttgagcttatctactgtcataagcac 18327107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 23373232 - 23373300
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttat 229  Q
    |||||| |||||||||||||| |||  ||||||| |||||||| ||| ||  ||||||||||| |||||    
T  23373232 tgtttgaattgacttatttgaacttgtctactgatataagcacttgtgagattgtttgggagagcttat 23373300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 27807269 - 27807197
Alignment:
Q  158 gtgtgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||  |||||||||||||| |||  |||||||||||||||  ||| || ||||||| |||| ||||||    
T  27807269 gtgtgtttaaattgacttatttgaacttttctactgacataagcatttgtaagactgtttgagagagcttatg 27807197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 28262490 - 28262522
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactg 193  Q
    ||||||||||||||||||||||||||| |||||    
T  28262490 tgtttggattgacttatttgagcttacgtactg 28262522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 28837278 - 28837314
Alignment:
Q  167 gattgacttatttgagcttacctactgacataagcac 203  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  28837278 gattggcttatttgagcttatctactgacataagcac 28837314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 29793619 - 29793655
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataa 199  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  29793619 tttgtattgacttatttgagcttatctactgacataa 29793655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 30259406 - 30259462
Alignment:
Q  162 gtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttg 218  Q
    ||||||||||||||||||||| |||||||| | ||||| ||| | | ||||||||||    
T  30259406 gtttggattgacttatttgagtttacctaccggcataaacacatttaaggctgtttg 30259462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 30536884 - 30536954
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatgt 231  Q
    |||||||||||||||||||||| ||| ||||| ||||||| || | |||| ||||||| ||||||||||||    
T  30536884 tgtttggattgacttatttgagtttatctacttacataagtacttattagactgtttgtgagaacttatgt 30536954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 26559160 - 26559227
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||| ||||||||||| |||||||||| ||||||||  ||| || |||||||| ||||||||||    
T  26559160 tttggattaacttatttgagtttacctactggcataagcatttgtgagactgtttggaagaacttatg 26559227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 33068521 - 33068591
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatgt 231  Q
    ||||||||||| ||||||||| |||| |||||||||||||||| ||  |   |||||||||||||||||||    
T  33068521 tgtttggattggcttatttgaacttatctactgacataagcacttggaaaagtgtttgggagaacttatgt 33068591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 35070386 - 35070450
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaac 225  Q
    ||||||||||  |||||||||||||| ||||| |||||||||| |||  | ||||||||||||||    
T  35070386 tgtttggattttcttatttgagcttatctactaacataagcacttgtgggactgtttgggagaac 35070450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 20861617 - 20861656
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataag 200  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  20861617 tgtttggattgtcttatttgagcttacctactggcataag 20861656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 21405073 - 21405112
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataag 200  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  21405073 tgtttggattgacttatttgagcttatatactgacataag 21405112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 2457092 - 2457034
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgg 219  Q
    ||||||||||| |||||||||| ||| |||| ||||||||||| ||| || ||||||||    
T  2457092 tgtttggattggcttatttgagattatctaccgacataagcacttgtaagactgtttgg 2457034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 4308928 - 4308886
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcac 203  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||    
T  4308928 tgtttggattggcttatttgagtttatctactgacataagcac 4308886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 9202904 - 9202941
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacata 198  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  9202904 tgtttggattgacttatttgagcttatctactggcata 9202941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 13908391 - 13908322
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||| |||||||||||||| |||| |||||||||||| ||| ||| |  || ||| ||||||||||||    
T  13908391 tgtttgaattgacttatttgaacttatctactgacataaacacttgtgacactctttaggagaacttatg 13908322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 31776191 - 31776224
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactga 194  Q
    |||||||||||||||||||||||||| |||||||    
T  31776191 tgtttggattgacttatttgagcttatctactga 31776224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 32205932 - 32206001
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||||||||||||||| |||| |||||  |||||| || | | ||||| |||| |||||||||||    
T  32205932 tgtttggattgacttatttgaccttatctactagcataagtacttataaggctttttgagagaacttatg 32206001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 33027743 - 33027706
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacata 198  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  33027743 tgtttggattgatttatttgagcttatctactgacata 33027706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 33089657 - 33089620
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacata 198  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  33089657 tgtttgggttgacttatttgagcttatctactgacata 33089620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 7351597 - 7351657
Alignment:
Q  168 attgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaactta 228  Q
    ||||||||||||||| ||| |||||||||||||||| ||| ||  |||||  |||||||||    
T  7351597 attgacttatttgagtttatctactgacataagcacttgtgagattgtttatgagaactta 7351657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 12111116 - 12111076
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcac 203  Q
    |||||||||||||||||||||||| |||||  |||||||||    
T  12111116 tttggattgacttatttgagcttatctactagcataagcac 12111076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 31624411 - 31624371
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagc 201  Q
    ||||||||||| ||||||||||||||  |||||||||||||    
T  31624411 tgtttggattggcttatttgagcttatatactgacataagc 31624371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 35070573 - 35070605
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactg 193  Q
    ||||||||||| |||||||||||||||||||||    
T  35070573 tgtttggattggcttatttgagcttacctactg 35070605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 1017176 - 1017111
Alignment:
Q  164 ttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttat 229  Q
    ||||||||||||||||||||| | |||||||||||| ||| ||| || |||||||| |||||||||    
T  1017176 ttggattgacttatttgagctaatctactgacataaacacttgtgagactgtttggaagaacttat 1017111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 18628478 - 18628541
Alignment:
Q  167 gattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||| |||||||||||| |||||||||||| ||| ||| || |||||||||||| ||||||    
T  18628478 gattgacgtatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatg 18628541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 27043749 - 27043788
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataag 200  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  27043749 tgtttggattgacttatttgagcttatctactgacataag 27043788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 1133082 - 1133021
Alignment:
Q  158 gtgtgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgg 219  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||||   ||||||||| |||||    
T  1133082 gtgtgtttgaattgacttatttgagcttatctactgacacaagctgttgttaggctatttgg 1133021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 32420979 - 32421019
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcac 203  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  32420979 tttggattgacttatttgagcttacctactagcataagcac 32421019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 37636107 - 37636167
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggaga 223  Q
    |||||||||| ||||||||| ||| ||||| |||||||||||||| |  ||||||||||||    
T  37636107 tttggattgatttatttgagtttatctactaacataagcacctgtaaaactgtttgggaga 37636167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 17822784 - 17822823
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataag 200  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  17822784 tgtttggattaacttatttgagcttatctactgacataag 17822823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 24193688 - 24193645
Alignment:
Q  156 gagtgtgtttggattgacttatttgagcttacctactgacataa 199  Q
    ||||||||||||||||||||||||||||||| || ||| |||||    
T  24193688 gagtgtgtttggattgacttatttgagcttatctcctggcataa 24193645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 42403942 - 42403981
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataag 200  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  42403942 tgtttggattgacttatttgagcttatcaactgacataag 42403981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 49940086 - 49940125
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataag 200  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  49940086 tgtttggattgacttatttgagcttacctgctaacataag 49940125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 15173223 - 15173261
Alignment:
Q  162 gtttggattgacttatttgagcttacctactgacataag 200  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  15173223 gtttggattgacttatttgaacttatctactgacataag 15173261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 22471398 - 22471356
Alignment:
Q  188 ctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||||||||||| ||| || |||||||||||||||||||    
T  22471398 ctactgacataagcacttgtgagactgtttgggagaacttatg 22471356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 22662170 - 22662212
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcac 203  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||    
T  22662170 tgtttggattgacttatttgagtttatctactaacataagcac 22662212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 22666649 - 22666691
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcac 203  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||    
T  22666649 tgtttggattgacttatttgagtttatctactaacataagcac 22666691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 28259424 - 28259382
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcac 203  Q
    |||||||| ||||||||||||||||| | ||||||||||||||    
T  28259424 tgtttggactgacttatttgagcttatcaactgacataagcac 28259382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 9720573 - 9720642
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||| ||||||||||||||||| ||| ||||| ||||||||||  | ||| ||||||| || ||||||||    
T  9720573 tgttgggattgacttatttgagtttatctactaacataagcactagatagactgtttgagaaaacttatg 9720642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 32831438 - 32831479
Alignment:
Q  162 gtttggattgacttatttgagcttacctactgacataagcac 203  Q
    |||||||||| || ||||||||||| ||||||||||||||||    
T  32831438 gtttggattggctcatttgagcttatctactgacataagcac 32831479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 39178185 - 39178254
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||||||| ||||| ||| || |||||||||||| ||| | | |  |||||||||||||||||||    
T  39178185 tgtttggattgacgtatttaagcatatctactgacataaacacttttgacactgtttgggagaacttatg 39178254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 50298659 - 50298598
Alignment:
Q  168 attgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttat 229  Q
    ||||| |||||| |||||| |||||||||||||||| ||| || |||||||| | |||||||    
T  50298659 attgatttattttagcttatctactgacataagcacttgtgagactgtttggaaaaacttat 50298598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 53034718 - 53034759
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagca 202  Q
    ||||||| |||||||||||||||||| ||||||| |||||||    
T  53034718 tgtttggtttgacttatttgagcttatctactgatataagca 53034759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 53138148 - 53138099
Alignment:
Q  167 gattgacttatttgagcttacctactgacataagcacctgttaggctgtt 216  Q
    ||||||| ||||||||||||  ||||||||||||||||||| || |||||    
T  53138148 gattgacctatttgagcttatttactgacataagcacctgtgagactgtt 53138099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 3639089 - 3639133
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataagcacctgt 207  Q
    ||||||||  |||||||||||||| |||| |||||||||||||||    
T  3639089 tttggatttgcttatttgagcttatctaccgacataagcacctgt 3639133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 19305080 - 19305036
Alignment:
Q  158 gtgtgtttggattgacttatttgagcttacctactgacataagca 202  Q
    |||| |||||||||||||||||||| ||| ||| |||||||||||    
T  19305080 gtgtatttggattgacttatttgagattatctattgacataagca 19305036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 44320099 - 44320031
Alignment:
Q  162 gtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||||  ||||||||||||||||| || ||||| ||  ||| || |||||||||||| ||||||    
T  44320099 gtttggattggtttatttgagcttacctattggcataaacaattgtgagactgtttgggagagcttatg 44320031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 50211886 - 50211817
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||||| |||||||| |||||| ||||| |||||||||| ||| || ||||||| |||||||||||    
T  50211886 tgtttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatg 50211817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 21872214 - 21872272
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgg 219  Q
    |||||||||| |||||||||| |||| |||||||||||||||| ||| || ||||||||    
T  21872214 tgtttggattaacttatttgatcttatctactgacataagcacttgtgagactgtttgg 21872272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 20210847 - 20210916
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||||||| ||||||||| ||| |||||||||||| ||| ||| || ||||||| |||| ||||||    
T  20210847 tgtttggattgatttatttgaggttatctactgacataaccacttgtgagactgtttgagagatcttatg 20210916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 26990144 - 26990181
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacata 198  Q
    |||||||||||||||||||||||||| |||||||||||    
T  26990144 tgtttggattgacttatttgagcttatctactgacata 26990181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 30573834 - 30573902
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    ||||||||| |||||||||||||| | |||||||||||||||| ||| ||  |||||| |||||||||||    
T  30573834 tgtttggatggacttatttgagct-atctactgacataagcacttgtgagtttgtttgtgagaacttatg 30573902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 47903999 - 47904068
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||||||||||||||||| ||| |  |||| |||||| ||||| |  |||||||||||||||||||    
T  47903999 tgtttggattgacttatttgagtttatcctctgatataagctcctgtgacactgtttgggagaacttatg 47904068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 1288763 - 1288828
Alignment:
Q  156 gagtgtgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggaga 223  Q
    |||| |||||||||||||||||||||||||| | |||| |||||||||  || || ||||||||||||    
T  1288763 gagtttgtttggattgacttatttgagcttatcaactggcataagcac--gtgagactgtttgggaga 1288828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 22667548 - 22667492
Alignment:
Q  167 gattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggaga 223  Q
    ||||| |||||||||||||| |||||||||||||||| ||| || ||||||| ||||    
T  22667548 gattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagaga 22667492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 22724187 - 22724131
Alignment:
Q  167 gattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggaga 223  Q
    ||||| |||||||||||||| |||||||||||||||| ||| || ||||||| ||||    
T  22724187 gattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagaga 22724131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 25447159 - 25447203
Alignment:
Q  156 gagtgtgtttggattgacttatttgagcttacctactgacataag 200  Q
    |||| |||||||||||||||||||||| ||| |||||||||||||    
T  25447159 gagtctgtttggattgacttatttgagtttatctactgacataag 25447203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 16072960 - 16072999
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataag 200  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  16072960 tgtttggattgacttatttgagcttatctaatgacataag 16072999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 2923631 - 2923561
Alignment:
Q  159 tgtgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttat 229  Q
    |||||| ||||||||||||| ||||||| ||| ||||||||| || ||  || |||||||| |||||||||    
T  2923631 tgtgttcggattgacttattcgagcttatctattgacataagtacttgaaagactgtttggaagaacttat 2923561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 3775769 - 3775838
Alignment:
Q  160 gtgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttat 229  Q
    |||||||||||| |||||||||| ||| |||||| ||||| ||  |||||| |||||||| ||| |||||    
T  3775769 gtgtttggattgccttatttgagtttatctactggcataaacaattgttagactgtttggcagagcttat 3775838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 26911740 - 26911703
Alignment:
Q  163 tttggattgacttatttgagcttacctactgacataag 200  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  26911740 tttggattgacttatttgagtttatctactgacataag 26911703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 33965407 - 33965476
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||| |||||||| |||||||||||| |||||||| ||| ||| ||| || |||||| ||||| ||||||    
T  33965407 tgttcggattgacatatttgagcttatctactgacttaaacacatgtgagactgtttaggagaccttatg 33965476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 45590802 - 45590733
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||| |||||||| ||||| |||| |||||  ||||||||| ||| || |||||||||||| ||||||    
T  45590802 tgtttgaattgacttttttgaacttatctactagcataagcacttgtgagactgtttgggagagcttatg 45590733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 2081002 - 2081042
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagc 201  Q
    ||||||||||||||||||||| |||| ||| ||||||||||    
T  2081002 tgtttggattgacttatttgaacttatctattgacataagc 2081042  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 20669768 - 20669700
Alignment:
Q  162 gtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatg 230  Q
    |||||||| ||||||| ||||||||  ||||||||||| ||  | |||| |||||||| ||||||||||    
T  20669768 gtttggatcgacttatctgagcttatttactgacataaacatattttagactgtttggaagaacttatg 20669700  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 33405114 - 33405150
Alignment:
Q  164 ttggattgacttatttgagcttacctactgacataag 200  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  33405114 ttggattgacttatttgagtttatctactgacataag 33405150  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 41155320 - 41155280
Alignment:
Q  161 tgtttggattgacttatttgagcttacctactgacataagc 201  Q
    |||||||||||||||||||||||||| ||||| ||| ||||    
T  41155320 tgtttggattgacttatttgagcttaactactaacacaagc 41155280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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