View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5109-Insertion-1 (Length: 1023)

Name: NF5109-Insertion-1
Description: NF5109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5109-Insertion-1
NF5109-Insertion-1
[»] chr3 (17 HSPs)
chr3 (8-331)||(2158848-2159172)
chr3 (20-319)||(40089737-40090037)
chr3 (332-509)||(41382463-41382642)
chr3 (332-509)||(10804790-10804969)
chr3 (370-512)||(2154462-2154606)
chr3 (370-510)||(2164299-2164441)
chr3 (370-510)||(40094269-40094411)
chr3 (370-510)||(40084526-40084668)
chr3 (147-297)||(19688429-19688579)
chr3 (165-297)||(25507586-25507718)
chr3 (163-292)||(4363263-4363392)
chr3 (207-331)||(48982299-48982423)
chr3 (207-297)||(28360947-28361037)
chr3 (109-292)||(16405647-16405830)
chr3 (109-292)||(6426345-6426528)
chr3 (109-292)||(8976884-8977067)
chr3 (109-292)||(9541173-9541356)
[»] scaffold0163 (3 HSPs)
scaffold0163 (8-319)||(19510-19822)
scaffold0163 (344-459)||(23879-23994)
scaffold0163 (344-459)||(15158-15274)
[»] chr1 (8 HSPs)
chr1 (8-319)||(20174955-20175267)
chr1 (370-511)||(51283507-51283650)
chr1 (344-510)||(20182817-20182985)
chr1 (344-509)||(20178261-20178428)
chr1 (347-481)||(20145491-20145625)
chr1 (391-481)||(17878055-17878145)
chr1 (207-331)||(14278314-14278438)
chr1 (198-292)||(16158921-16159015)
[»] chr4 (12 HSPs)
chr4 (332-512)||(42114395-42114577)
chr4 (332-509)||(14529369-14529548)
chr4 (334-510)||(14536817-14536995)
chr4 (344-509)||(32194031-32194198)
chr4 (135-297)||(115780-115942)
chr4 (138-297)||(14935930-14936089)
chr4 (207-298)||(54696042-54696133)
chr4 (163-292)||(18127159-18127288)
chr4 (207-297)||(26815921-26816011)
chr4 (391-510)||(27075309-27075432)
chr4 (391-510)||(27155403-27155526)
chr4 (109-292)||(6696256-6696439)
[»] scaffold0465 (1 HSPs)
scaffold0465 (332-510)||(7231-7411)
[»] chr8 (16 HSPs)
chr8 (332-509)||(183064-183243)
chr8 (332-510)||(23751685-23751864)
chr8 (332-500)||(23742414-23742584)
chr8 (344-509)||(21984394-21984561)
chr8 (558-833)||(11742757-11743022)
chr8 (138-297)||(45495423-45495582)
chr8 (898-995)||(11743016-11743116)
chr8 (163-297)||(20748051-20748185)
chr8 (332-457)||(22693705-22693830)
chr8 (163-331)||(33598109-33598277)
chr8 (159-297)||(19754337-19754475)
chr8 (207-289)||(18236367-18236449)
chr8 (207-289)||(18245818-18245900)
chr8 (207-292)||(25047632-25047717)
chr8 (109-292)||(21209090-21209273)
chr8 (109-292)||(14887809-14887992)
[»] chr5 (16 HSPs)
chr5 (332-509)||(43460782-43460961)
chr5 (344-510)||(21079063-21079231)
chr5 (370-511)||(29683288-29683431)
chr5 (135-297)||(724690-724852)
chr5 (138-297)||(15326982-15327141)
chr5 (163-331)||(22454053-22454221)
chr5 (138-297)||(18711628-18711787)
chr5 (207-297)||(30450858-30450948)
chr5 (207-331)||(5604196-5604320)
chr5 (207-297)||(24416259-24416350)
chr5 (109-292)||(26198445-26198628)
chr5 (109-292)||(33943358-33943541)
chr5 (207-289)||(24296837-24296919)
chr5 (109-289)||(20951902-20952082)
chr5 (180-292)||(27416186-27416298)
chr5 (109-292)||(18383778-18383961)
[»] scaffold0002 (1 HSPs)
scaffold0002 (332-509)||(377192-377371)
[»] chr7 (13 HSPs)
chr7 (332-510)||(28721929-28722108)
chr7 (332-509)||(48814561-48814740)
chr7 (135-297)||(610364-610526)
chr7 (109-292)||(9541360-9541543)
chr7 (174-298)||(15179165-15179289)
chr7 (109-292)||(16138304-16138487)
chr7 (109-292)||(5388035-5388218)
chr7 (109-292)||(6538515-6538698)
chr7 (109-292)||(8505087-8505270)
chr7 (109-292)||(26354419-26354602)
chr7 (109-292)||(32102418-32102601)
chr7 (109-292)||(44901395-44901578)
chr7 (109-292)||(46501152-46501335)
[»] chr6 (12 HSPs)
chr6 (332-510)||(24843114-24843294)
chr6 (332-509)||(6082108-6082287)
chr6 (135-297)||(8998478-8998640)
chr6 (135-297)||(9007647-9007810)
chr6 (168-297)||(11377428-11377557)
chr6 (163-289)||(27747224-27747350)
chr6 (108-297)||(17946063-17946252)
chr6 (109-292)||(18164103-18164286)
chr6 (109-292)||(24928285-24928468)
chr6 (109-292)||(31360857-31361040)
chr6 (207-289)||(25898134-25898216)
chr6 (109-292)||(16901984-16902167)
[»] chr2 (10 HSPs)
chr2 (344-511)||(9656366-9656535)
chr2 (135-297)||(24992685-24992847)
chr2 (207-331)||(1794581-1794705)
chr2 (109-289)||(27166100-27166280)
chr2 (109-292)||(9509884-9510067)
chr2 (150-293)||(13945443-13945586)
chr2 (150-293)||(14086632-14086775)
chr2 (109-292)||(18655256-18655439)
chr2 (109-292)||(45018388-45018571)
chr2 (109-289)||(22906186-22906366)
[»] scaffold0198 (1 HSPs)
scaffold0198 (344-509)||(16211-16378)
[»] scaffold0077 (1 HSPs)
scaffold0077 (344-509)||(21097-21264)
[»] scaffold0310 (1 HSPs)
scaffold0310 (344-510)||(19000-19168)
[»] scaffold0023 (1 HSPs)
scaffold0023 (332-509)||(41430-41608)
[»] scaffold0066 (2 HSPs)
scaffold0066 (370-509)||(8393-8534)
scaffold0066 (455-510)||(1-58)
[»] scaffold0096 (2 HSPs)
scaffold0096 (388-509)||(38680-38803)
scaffold0096 (135-297)||(52647-52809)
[»] scaffold0021 (1 HSPs)
scaffold0021 (163-297)||(166909-167043)
[»] scaffold0500 (1 HSPs)
scaffold0500 (147-297)||(9575-9725)
[»] scaffold0028 (2 HSPs)
scaffold0028 (207-298)||(100556-100647)
scaffold0028 (135-280)||(85429-85574)
[»] scaffold0288 (1 HSPs)
scaffold0288 (394-511)||(17183-17300)
[»] scaffold0049 (2 HSPs)
scaffold0049 (163-289)||(18628-18754)
scaffold0049 (180-292)||(84779-84891)
[»] scaffold0010 (1 HSPs)
scaffold0010 (207-292)||(260506-260591)
[»] scaffold0313 (1 HSPs)
scaffold0313 (109-289)||(13598-13778)
[»] scaffold0003 (1 HSPs)
scaffold0003 (109-289)||(149054-149234)
[»] scaffold0254 (1 HSPs)
scaffold0254 (213-292)||(14203-14282)
[»] scaffold0141 (1 HSPs)
scaffold0141 (159-292)||(29921-30054)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 331
Target Start/End: Complemental strand, 2159172 - 2158848
Alignment:
Q  8 tagaatgatgatgttcatcttcattttcatttacattctcaacaataagatcattaaattcatcaaaaacaatatgcatgctt-cttctatacatctggt 106  Q
    |||||||| || ||||||||||||  |||||||||||||||||| |||||||||||||||||||||| |||| |||||||||| | ||| ||||||||||    
T  2159172 tagaatgacgaggttcatcttcatcctcatttacattctcaacattaagatcattaaattcatcaaagacaacatgcatgctttcctctgtacatctggt 2159073  T
Q  107 ccttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttg 206  Q
     ||||||||||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  2159072 tcttagattatagactctataacttttggaagtagtagaataaccaagaaaaatagctttgtctgacttagagtcaaacttactcaaattatctttgttg 2158973  T
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaatatttttga 306  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||| || |||| |||    
T  2158972 ttcaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggtttcttatttttccagagttcatatggggttttgtttagaaaatttctga 2158873  T
Q  307 tagtaacacgatttaaaatatagca 331  Q
    ||||||||||||| | |||||||||    
T  2158872 tagtaacacgattcagaatatagca 2158848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 40089737 - 40090037
Alignment:
Q  20 gttcatcttcattttcatttacattctcaacaataagatcattaaattcatcaaaaacaatatgcatgctt-cttctatacatctggtccttagattata 118  Q
    ||||||||||||  |||||||||||||||||| |||||||||||||||||||||| |||| |||||||||| | ||| |||||||||| |||||||||||    
T  40089737 gttcatcttcatcctcatttacattctcaacattaagatcattaaattcatcaaagacaacatgcatgctttcctctgtacatctggttcttagattata 40089836  T
Q  119 aactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaa 218  Q
     |||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  40089837 gactctataacttttggaagtagtagaataaccaagaaaaatagctttgtctgacttagagtcaaacttactcagattatctttgttgttcaaaatgtaa 40089936  T
Q  219 caataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaatatttttgatagtaacacgat 318  Q
    |||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||| || |||| |||||||||||||||    
T  40089937 caataacatccaaagatatgaaagtatgcaatggtaggtttcttatttttccagagttcatatggggttttgtttagaaaatttctgatagtaacacgat 40090036  T
Q  319 t 319  Q
    |    
T  40090037 t 40090037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 332 - 509
Target Start/End: Complemental strand, 41382642 - 41382463
Alignment:
Q  332 tgagcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaa 431  Q
    |||||| || |||| |||||||||||  |||||||   ||||||| ||| | ||| ||||||||||||||||  |||||||||||||||||||||||| |    
T  41382642 tgagcataaacatcaaaggatacatggctttaacaatgtgtgagaattggactttcctatccttaataaaattcactcaagagcacacattaaataacca 41382543  T
Q  432 aataaaattataatcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaaca 509  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  41382542 aataaaattataatcttaattttaatacaagagtttgtttatcatttaaaaacaatttcaaagggatttttgcttcaaca 41382463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 332 - 509
Target Start/End: Complemental strand, 10804969 - 10804790
Alignment:
Q  332 tgagcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaa 431  Q
    |||||| ||||||||| |||||||||  |||||||   ||||| | ||| | ||| || |||||||||||||  |||||||||||||||||||||||| |    
T  10804969 tgagcataatcatccatggatacatggctttaacaatgtgtgataattggactttcctttccttaataaaattcactcaagagcacacattaaataacca 10804870  T
Q  432 aataaaattataatcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaaca 509  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||||||  |||||| || |||||||||||||||| ||||    
T  10804869 aataatattataatcttaattttaatacaagagtttttttatcatttaaaaacaaattcaaagggatttttgctttaaca 10804790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 370 - 512
Target Start/End: Complemental strand, 2154606 - 2154462
Alignment:
Q  370 tgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattataatcttaattttaatactagagtttgt 469  Q
    ||||||| ||| | ||| ||||| |||||| |||  |||||| ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||    
T  2154606 tgtgagaattggactttcctatctttaatagaattcactcaaaagcacacattaaataaccaaataacattataatcttaattttaatacaagagtttgt 2154507  T
Q  470 ttatcattt--aaacaattttaaagggatttttgcttcaacaaaa 512  Q
    |||||||||  |||||| || ||||||||||||||||||||||||    
T  2154506 ttatcatttaaaaacaagttcaaagggatttttgcttcaacaaaa 2154462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 370 - 510
Target Start/End: Complemental strand, 2164441 - 2164299
Alignment:
Q  370 tgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattataatcttaattttaatactagagtttgt 469  Q
    ||||||| ||| | ||| ||||| |||||| |||  |||||| ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||    
T  2164441 tgtgagaattggactttcctatctttaatagaattcactcaaaagcacacattaaataaccaaataacattataatcttaattttaatacaagagtttgt 2164342  T
Q  470 ttatcattt--aaacaattttaaagggatttttgcttcaacaa 510  Q
    |||||||||  |||||| || ||||||||||||||||||||||    
T  2164341 ttatcatttaaaaacaagttcaaagggatttttgcttcaacaa 2164299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 370 - 510
Target Start/End: Original strand, 40094269 - 40094411
Alignment:
Q  370 tgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattataatcttaattttaatactagagtttgt 469  Q
    ||||||| ||| | ||| ||||| |||||| |||  |||||| ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||    
T  40094269 tgtgagaattggactttcctatctttaatagaattcactcaaaagcacacattaaataaccaaataacattataatcttaattttaatacaagagtttgt 40094368  T
Q  470 ttatcattt--aaacaattttaaagggatttttgcttcaacaa 510  Q
    |||||||||  |||||| || ||||||||||||||||||||||    
T  40094369 ttatcatttaaaaacaagttcaaagggatttttgcttcaacaa 40094411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 370 - 510
Target Start/End: Original strand, 40084526 - 40084668
Alignment:
Q  370 tgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattataatcttaattttaatactagagtttgt 469  Q
    ||||||| ||| | ||| ||||| |||||| |||  |||||| ||||||||||||||||| |||||| |||||||||||||||| ||||| |||||||||    
T  40084526 tgtgagaattggactttcctatctttaatagaattcactcaaaagcacacattaaataaccaaataacattataatcttaatttcaatacaagagtttgt 40084625  T
Q  470 ttatcattt--aaacaattttaaagggatttttgcttcaacaa 510  Q
    |||||||||  |||||| || ||||||||||||||||||||||    
T  40084626 ttatcatttaaaaacaagttcaaagggatttttgcttcaacaa 40084668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 147 - 297
Target Start/End: Complemental strand, 19688579 - 19688429
Alignment:
Q  147 taacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatg 246  Q
    ||||| ||||| |||||||||||||||||||| ||||| || |  || |||| ||||||||||||||| ||||||||||||||||| |||||||| || |    
T  19688579 taaccaagaaatatagctttgtctgactttgaatcaaattttcctaggttatatttgttgtttaaaatataacaataacatccaaaaatatgaaaataag 19688480  T
Q  247 caatggtaggttttctatctttccagagttcatatggggttttgtttaaaa 297  Q
     ||||   || ||||| ||||||||||||||||| ||||||||||||||||    
T  19688479 aaatgtctggctttctttctttccagagttcatacggggttttgtttaaaa 19688429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 165 - 297
Target Start/End: Original strand, 25507586 - 25507718
Alignment:
Q  165 ttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctat 264  Q
    |||||||| |||||||||||||| | ||    || ||| ||||| |||||||||||||||||| |||||||||||||||||| |||| |  | |||||      
T  25507586 ttgtctgattttgagtcaaactttcccaacacatttttattgttcaaaatgtaacaataacattcaaagatatgaaagtatgaaatgtttagctttcttc 25507685  T
Q  265 ctttccagagttcatatggggttttgtttaaaa 297  Q
    |||||||||||||||| ||||||||||||||||    
T  25507686 ctttccagagttcatacggggttttgtttaaaa 25507718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 4363263 - 4363392
Alignment:
Q  163 ctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttct 262  Q
    |||||||||| |||||   |||||| |  ||||| |||||||  |||||||| ||||||||||| ||||| || ||||| |||| |||| ||||||||||    
T  4363263 ctttgtctgattttgaacaaaactttcctagattttctttgtcatttaaaatataacaataacaaccaaaaatgtgaaaatatgaaatgttaggttttct 4363362  T
Q  263 atctttccagagttcatatggggttttgtt 292  Q
    || ||||||||||||||||| |||||||||    
T  4363363 atttttccagagttcatatgaggttttgtt 4363392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 207 - 331
Target Start/End: Complemental strand, 48982423 - 48982299
Alignment:
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaatatttttga 306  Q
    |||||||| ||||||| ||| ||||| || ||||| || |  ||| | |||||| ||| ||||||||||||||||||||||||||||||||| ||| | |    
T  48982423 tttaaaatataacaatgacaaccaaaaatgtgaaaataagagatgtttggttttttatttttccagagttcatatggggttttgtttaaaatttttctaa 48982324  T
Q  307 tagtaacacgatttaaaatatagca 331  Q
    |||  |||||||||| |||||||||    
T  48982323 tagagacacgatttataatatagca 48982299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 28360947 - 28361037
Alignment:
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaa 297  Q
    |||||||| ||||||||||||||||| | |||||| ||||  ||| ||||||||  || |||||||||||| |||||||||||||||||||    
T  28360947 tttaaaatataacaataacatccaaaaacatgaaaatatgagatgttaggttttacatttttccagagttcgtatggggttttgtttaaaa 28361037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 16405830 - 16405647
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  16405830 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 16405731  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| ||||||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  16405730 cagtatgtaacaatagcagccaaaaatatgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 16405647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 6426528 - 6426345
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  6426528 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 6426429  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  6426428 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 6426345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 8977067 - 8976884
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  8977067 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 8976968  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  8976967 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 8976884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 9541356 - 9541173
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  9541356 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 9541257  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  9541256 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 9541173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 19822 - 19510
Alignment:
Q  8 tagaatgatgatgttcatcttcattttcatttacattctcaacaataagatcattaaattcatcaaaaacaatatgcatgctt-cttctatacatctggt 106  Q
    ||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||||||||| |||||| |||||| ||| | ||| ||||||||||    
T  19822 tagaatgatgaggttcatcttcatcctcatttacattctcaacattaagatcattaaattcatcagaaacaacatgcatactttcctctgtacatctggt 19723  T
Q  107 ccttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttg 206  Q
     ||||||||||| |||| ||| |||||||||| |||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||     
T  19722 tcttagattatagactctataacttttggaagaagtagaataaccaagaaaaatggctttgtctgacttagagtcaaacttactcagattatctttgtta 19623  T
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaatatttttga 306  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||| ||  ||| |||    
T  19622 ttcaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggtttcctatttttccaaagttcatatggggttttgtttagaaagtttctga 19523  T
Q  307 tagtaacacgatt 319  Q
    |||||||||||||    
T  19522 tagtaacacgatt 19510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 344 - 459
Target Start/End: Complemental strand, 23994 - 23879
Alignment:
Q  344 tccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattata 443  Q
    ||||| ||||||||  |||||||   ||||||| ||| | ||| ||||||||||||||||  ||| |||||||||||||||||||| |||||| ||||||    
T  23994 tccaatgatacatggctttaacaatgtgtgagaattggactttcctatccttaataaaattcacttaagagcacacattaaataaccaaataacattata 23895  T
Q  444 atcttaattttaatac 459  Q
    ||||||||||||||||    
T  23894 atcttaattttaatac 23879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 344 - 459
Target Start/End: Complemental strand, 15274 - 15158
Alignment:
Q  344 tccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaa-gagcacacattaaataacaaaataaaattat 442  Q
    ||||| ||||||||  |||||||   ||||||| ||| | ||| ||||||||||||||||  |||||| |||||||||||||||||| |||||| |||||    
T  15274 tccaatgatacatggctttaacaatgtgtgagaattggactttcctatccttaataaaattcactcaaagagcacacattaaataaccaaataacattat 15175  T
Q  443 aatcttaattttaatac 459  Q
    |||||||||||||||||    
T  15174 aatcttaattttaatac 15158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 20175267 - 20174955
Alignment:
Q  8 tagaatgatgatgttcatcttcattttcatttacattctcaacaataagatcattaaattcatcaaaaacaatatgcatgctt-cttctatacatctggt 106  Q
    ||||||||||| ||||||||||||  |||||| ||||||||||| | |||||||||||||||||||| |||| |||||||||| | ||| ||||||||||    
T  20175267 tagaatgatgaggttcatcttcatcctcattttcattctcaacatttagatcattaaattcatcaaatacaacatgcatgctttcctctgtacatctggt 20175168  T
Q  107 ccttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttg 206  Q
     ||||  ||||| |||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  20175167 tcttattttatagactctataacttttggaagtagtagaataaccaagaaaaattgctttgtctgacttagagtcaaacttactcagattatctttgttg 20175068  T
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaatatttttga 306  Q
    || |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||  |||||||||||||||||||||||||||| || |||| |||    
T  20175067 ttcaaaatgtaacaataacatccaaagatatgaaagtatgcaatgttaggtttcctattcttccagagttcatatggggttttgtttagaaaatttctga 20174968  T
Q  307 tagtaacacgatt 319  Q
    |||||||||||||    
T  20174967 tagtaacacgatt 20174955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 370 - 511
Target Start/End: Original strand, 51283507 - 51283650
Alignment:
Q  370 tgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattataatcttaattttaatactagagtttgt 469  Q
    ||||||| ||| | ||| |||||||||||| |||  |||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||    
T  51283507 tgtgagaattggactttcctatccttaatagaattcactcaagagcacacattaaataaccaaataacattataatcttaattttaatacaagagtttgt 51283606  T
Q  470 ttatcattt--aaacaattttaaagggatttttgcttcaacaaa 511  Q
    |||||||||  |||||| ||||||||||||||||||||||||||    
T  51283607 ttatcatttaaaaacaagtttaaagggatttttgcttcaacaaa 51283650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 344 - 510
Target Start/End: Complemental strand, 20182985 - 20182817
Alignment:
Q  344 tccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattata 443  Q
    ||||| ||||||||  |||||||   ||||||| ||| | ||| ||||||||||||||||  |||||||||||||||||||||||| |||||| ||| ||    
T  20182985 tccaatgatacatggctttaacaatgtgtgagaattggactttcctatccttaataaaattcactcaagagcacacattaaataaccaaataacattgta 20182886  T
Q  444 atcttaattttaatactagagtttgtttatcatt--taaacaattttaaagggatttttgcttcaacaa 510  Q
    |||||||||||||||| |||||||||||||||||   |||||| || ||||||||||||||||||||||    
T  20182885 atcttaattttaatacaagagtttgtttatcattgaaaaacaagttcaaagggatttttgcttcaacaa 20182817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 344 - 509
Target Start/End: Complemental strand, 20178428 - 20178261
Alignment:
Q  344 tccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattata 443  Q
    ||||| ||||||||  |||||||   ||||||| ||| | ||| ||||||||||||||||  |||||||||||||||||||||||| |||||| ||| ||    
T  20178428 tccaatgatacatggctttaacaatgtgtgagaattggactttcctatccttaataaaattcactcaagagcacacattaaataaccaaataacattgta 20178329  T
Q  444 atcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaaca 509  Q
    ||||||||||||| || ||||||||||||||||||  |||||| || |||||||||||||||||||||    
T  20178328 atcttaattttaacacaagagtttgtttatcatttaaaaacaagttcaaagggatttttgcttcaaca 20178261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 347 - 481
Target Start/End: Complemental strand, 20145625 - 20145491
Alignment:
Q  347 aaggatacatgattttaacataat-gtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattataat 445  Q
    ||||| |||||| ||||||||| | || ||||||||||||   | |||||||||||||  |  |||||| |||||||||||||||| ||||||| |||||    
T  20145625 aaggacacatgactttaacatatttgttagatttgaatttca-tgtccttaataaaattcatccaagaggacacattaaataacaacataaaatcataat 20145527  T
Q  446 cttaattttaatactagagtttgtttatcatttaaa 481  Q
    ||||||||||| || ||||| |||||||||||||||    
T  20145526 cttaattttaacacaagagtctgtttatcatttaaa 20145491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 391 - 481
Target Start/End: Complemental strand, 17878145 - 17878055
Alignment:
Q  391 tccttaataaaatcgactcaagagcacacattaaataacaaaataaaattataatcttaattttaatactagagtttgtttatcatttaaa 481  Q
    |||||||||||||  | |||||||||||||||||||||||| ||||||| || ||||||||||||| |  ||||||| |||||||||||||    
T  17878145 tccttaataaaattcattcaagagcacacattaaataacaacataaaatcatgatcttaattttaacataagagtttatttatcatttaaa 17878055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 331
Target Start/End: Original strand, 14278314 - 14278438
Alignment:
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaatatttttga 306  Q
    |||||||| |||||| |||| ||||| || ||||| || | |||| | |||||||| | ||||||||||||||| ||||||||||| | ||| ||| |||    
T  14278314 tttaaaatataacaaaaacaaccaaaaatgtgaaaataagaaatgtttggttttctgtttttccagagttcatagggggttttgttgagaatttttctga 14278413  T
Q  307 tagtaacacgatttaaaatatagca 331  Q
    | | ||| ||||||| |||||||||    
T  14278414 ttgaaactcgatttataatatagca 14278438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 292
Target Start/End: Complemental strand, 16159015 - 16158921
Alignment:
Q  198 tctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
    ||||| ||||| || ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  16159015 tctttattgttcaatatgtaacaatagcagccaaatatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 16158921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 1e-53; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 332 - 512
Target Start/End: Original strand, 42114395 - 42114577
Alignment:
Q  332 tgagcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaa 431  Q
    |||||| || ||||||||||||||||  |||||||   ||||||| ||| ||||| ||||||||||||||||  |||||||||||||||||||||||| |    
T  42114395 tgagcataaacatccaaggatacatggctttaacaatgtgtgagaattggattttcctatccttaataaaattcactcaagagcacacattaaataacca 42114494  T
Q  432 aataaaattataatcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaacaaaa 512  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||| ||||||||||||||||||    
T  42114495 aataaaattataatcttaattttaatacaagagtttgtttatcatttaaaaacaatttcaaaggaatttttgcttcaacaaaa 42114577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 332 - 509
Target Start/End: Complemental strand, 14529548 - 14529369
Alignment:
Q  332 tgagcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaa 431  Q
    |||||| |||||||||||||||||||| |||||||   ||||||| ||| | ||| ||||||||||||||||  |||||| ||||||||||||||||| |    
T  14529548 tgagcataatcatccaaggatacatgactttaacaatgtgtgagaattggactttcctatccttaataaaattcactcaatagcacacattaaataacca 14529449  T
Q  432 aataaaattataatcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaaca 509  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||  ||||||||| |||||||||||||||||||||    
T  14529448 aataaaattataatcttaattttaatacaagagtttgtttattatttaaaaacaatttcaaagggatttttgcttcaaca 14529369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 334 - 510
Target Start/End: Complemental strand, 14536995 - 14536817
Alignment:
Q  334 agcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaa 433  Q
    |||| |||||||||||||||||||  ||||| |   ||||||| ||| | ||| ||||||||||||||||  |||||||||||||||||||||||| |||    
T  14536995 agcataatcatccaaggatacatggctttaaaaatgtgtgagaattggactttcctatccttaataaaattcactcaagagcacacattaaataaccaaa 14536896  T
Q  434 taaaattataatcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaacaa 510  Q
    |||||||||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  14536895 taaaattataatcttaattttaatacaagagtttgtttatcatttaaaaacaatttcaaagggatttttgcttcaacaa 14536817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 344 - 509
Target Start/End: Complemental strand, 32194198 - 32194031
Alignment:
Q  344 tccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattata 443  Q
    ||||| ||||||||  |||||||   ||||||| ||| | ||| ||||||||||||||||  |||||||||||||||||||||||| |||||| ||||||    
T  32194198 tccaatgatacatggctttaacaatgtgtgagaattggactttcctatccttaataaaattcactcaagagcacacattaaataaccaaataacattata 32194099  T
Q  444 atcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaaca 509  Q
    |||||||||||||||| ||||||||||||||||||  |||||| || |||||||||||||||||||||    
T  32194098 atcttaattttaatacaagagtttgtttatcatttaaaaacaagttcaaagggatttttgcttcaaca 32194031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 135 - 297
Target Start/End: Complemental strand, 115942 - 115780
Alignment:
Q  135 gaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaaga 234  Q
    ||||||| ||| ||||| ||||| |||||||||||||| ||||| ||||| || |  || |||||||||||||||||||| ||||||||||||||||| |    
T  115942 gaagtagcagagtaaccaagaaatatagctttgtctgattttgaatcaaattttcctaggttatctttgttgtttaaaatataacaataacatccaaaaa 115843  T
Q  235 tatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaa 297  Q
    ||||||| || | ||||   || ||||| ||||||||||||||||| ||||||||||||||||    
T  115842 tatgaaaataagaaatgtctggctttctttctttccagagttcatacggggttttgtttaaaa 115780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 138 - 297
Target Start/End: Complemental strand, 14936089 - 14935930
Alignment:
Q  138 gtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatat 237  Q
    |||| |||||| |||| ||| || ||||||||||||||||||||||| || | ||   ||||||| |||||||| ||||| |||||||| ||||| ||||    
T  14936089 gtagaagaatatcccaaaaatattgctttgtctgactttgagtcaaatttccccaaggtatctttattgtttaagatgtagcaataacagccaaatatat 14935990  T
Q  238 gaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaa 297  Q
    |||| |||| |||| | || |||||  |||||||||||||||| |||||||| |||||||    
T  14935989 gaaaatatgaaatgtttggctttcttcctttccagagttcatacggggttttttttaaaa 14935930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 54696042 - 54696133
Alignment:
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaat 298  Q
    |||||||| ||||||||||||||||| |||||||| ||||  ||| |||||||| ||| |||||||||||| ||||||||||||||||||||    
T  54696042 tttaaaatataacaataacatccaaaaatatgaaaatatgagatgttaggttttatatttttccagagttcgtatggggttttgtttaaaat 54696133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 18127159 - 18127288
Alignment:
Q  163 ctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttct 262  Q
    |||||||||| |||||   |||||| |  ||||| |||||||  |||||||| ||||||||||| ||||| || ||||| |||| |||| ||||||||||    
T  18127159 ctttgtctgattttgaacaaaactttcctagattttctttgtcatttaaaatataacaataacaaccaaaaatgtgaaaatatgaaatgttaggttttct 18127258  T
Q  263 atctttccagagttcatatggggttttgtt 292  Q
    || ||||||||||||||||| |||||||||    
T  18127259 atttttccagagttcatatgaggttttgtt 18127288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 26816011 - 26815921
Alignment:
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaa 297  Q
    |||||||| ||||||||||||||||| | |||||| ||||  ||| ||||||||  || |||||||||||| |||||||||||||||||||    
T  26816011 tttaaaatataacaataacatccaaaaacatgaaaatatgagatgttaggttttacatttttccagagttcgtatggggttttgtttaaaa 26815921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 391 - 510
Target Start/End: Original strand, 27075309 - 27075432
Alignment:
Q  391 tccttaataaaatcgactcaagagcacacattaaataacaaaataaaattataatcttaa--ttttaatactagagtttgtttatcattt--aaacaatt 486  Q
    |||||||| ||||  |||||| |||||||||||| |||| |  |||||||||||||||||  ||||||||| ||| ||||||||||| ||  ||||||||    
T  27075309 tccttaatgaaatatactcaaaagcacacattaagtaaccatgtaaaattataatcttaatcttttaatacaagaatttgtttatcacttaaaaacaatt 27075408  T
Q  487 ttaaagggatttttgcttcaacaa 510  Q
    | |||| |||||||||| ||||||    
T  27075409 tcaaagagatttttgctacaacaa 27075432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 391 - 510
Target Start/End: Original strand, 27155403 - 27155526
Alignment:
Q  391 tccttaataaaatcgactcaagagcacacattaaataacaaaataaaattataatcttaa--ttttaatactagagtttgtttatcattt--aaacaatt 486  Q
    |||||||| ||||  |||||| |||||||||||| |||| |  |||||||||||||||||  ||||||||| ||| ||||||||||| ||  ||||||||    
T  27155403 tccttaatgaaatatactcaaaagcacacattaagtaaccatgtaaaattataatcttaatcttttaatacaagaatttgtttatcacttaaaaacaatt 27155502  T
Q  487 ttaaagggatttttgcttcaacaa 510  Q
    | |||| |||||||||| ||||||    
T  27155503 tcaaagagatttttgctacaacaa 27155526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 6696439 - 6696256
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  6696439 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 6696340  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  6696339 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 6696256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0465 (Bit Score: 106; Significance: 2e-52; HSPs: 1)
Name: scaffold0465
Description:

Target: scaffold0465; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 332 - 510
Target Start/End: Complemental strand, 7411 - 7231
Alignment:
Q  332 tgagcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaa 431  Q
    |||||| |||||||||||||||||||  |||||||   ||||||| ||| | ||| ||||||||||||||||  |||||||||||||||||||||||| |    
T  7411 tgagcataatcatccaaggatacatggctttaacaatgtgtgagacttggactttcctatccttaataaaattcactcaagagcacacattaaataacca 7312  T
Q  432 aataaaattataatcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaacaa 510  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  7311 aataaaattataatcttaatcttaatacaagagtttgtttatcatttagaaacaatttcaaagggatttttgcttcaacaa 7231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 6e-52; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 332 - 509
Target Start/End: Original strand, 183064 - 183243
Alignment:
Q  332 tgagcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaa 431  Q
    |||||| |||||||||||||||||||  ||||| |   ||||||| ||| | ||| ||||||||||||||||  |||||||||||||||||||||||| |    
T  183064 tgagcataatcatccaaggatacatggctttaataatgtgtgagaattggactttcctatccttaataaaattcactcaagagcacacattaaataacca 183163  T
Q  432 aataaaattataatcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaaca 509  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  183164 aataaaattataatcttaattttaatacaagagtttgtttatcatttaaaaacaatttcaaagggatttttgcttcaaca 183243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 332 - 510
Target Start/End: Original strand, 23751685 - 23751864
Alignment:
Q  332 tgagcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaa 431  Q
    |||||| || ||||||| ||||||||  |||||||   |||||| |||| | ||| ||||||||||||||||  |||||||||||||||||||||||| |    
T  23751685 tgagcataaacatccaaagatacatggctttaacaatgtgtgagttttggactttcctatccttaataaaattcactcaagagcacacattaaataacca 23751784  T
Q  432 aataaaattataatcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaacaa 510  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||||||| |||||||||    
T  23751785 aataaaattataatcttaattttaatacaagagtttgtttatcatttaaaaacaatttcaaagggattttt-cttcaacaa 23751864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 332 - 500
Target Start/End: Original strand, 23742414 - 23742584
Alignment:
Q  332 tgagcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaa 431  Q
    |||||| || ||||||||||||||||  |||||||   |||||| |||| | ||| ||||||||||||||||  ||| |||||||||||||||||||| |    
T  23742414 tgagcataaacatccaaggatacatggctttaacaatgtgtgagttttggactttcctatccttaataaaattcactaaagagcacacattaaataacca 23742513  T
Q  432 aataaaattataatcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggattttt 500  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||||||    
T  23742514 aataaaattataatcttaattttaatacaagagtttgtttatcatttaaaaacaatttcaaagggattttt 23742584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 344 - 509
Target Start/End: Original strand, 21984394 - 21984561
Alignment:
Q  344 tccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattata 443  Q
    ||||| ||||||||  |||||||   ||||||| ||| | |||  ||||||||| |||||  ||||||||||||||||||||||||||||||| ||||||    
T  21984394 tccaatgatacatggctttaacaatgtgtgagaattggactttcttatccttaacaaaattcactcaagagcacacattaaataacaaaataacattata 21984493  T
Q  444 atcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaaca 509  Q
    |||||||||||||||| ||||||||||||||||||  |||||| || |||||||||||||||||||||    
T  21984494 atcttaattttaatacaagagtttgtttatcatttaaaaacaagttcaaagggatttttgcttcaaca 21984561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 558 - 833
Target Start/End: Original strand, 11742757 - 11743022
Alignment:
Q  558 tctcctcccaacttgcaaacaaagcctaaatgtcgagaagtgaaggaatgtgatgtgagttgtgcttacatgtcacttcttttaatatctcaactgacaa 657  Q
    |||||||| |||| ||||||||  ||||||| ||||||||||||| |||||||      |||||||| ||||||||||||||||||||||||| ||||||    
T  11742757 tctcctccaaactcgcaaacaagacctaaatatcgagaagtgaagaaatgtgaa-----ttgtgcttgcatgtcacttcttttaatatctcaaatgacaa 11742851  T
Q  658 tatcattattgttaagccgaacatctttgctcgagttcaaatctaagatcccgtagttgtgtgagaattttatgttgta-ttgtcattcggtctagctaa 756  Q
    ||||||||||||||  |||||||||||  || || ||||||||||||||| |||| || ||   ||||||||||   || ||||||||  ||||| ||||    
T  11742852 tatcattattgttagaccgaacatcttcacttgaattcaaatctaagatctcgtaattatggatgaattttatgcaatatttgtcatttcgtctaactaa 11742951  T
Q  757 aagaaatagagtaaaggtttataccaaaggattgaagttaccaattgagattgacacaaatgattagactttctcct 833  Q
    ||     | |||||||||||||||| |  |||  |||||||||||||||| || ||||||||||  |||||||||||    
T  11742952 aa-----acagtaaaggtttataccgagcgatcaaagttaccaattgaga-tgccacaaatgatatgactttctcct 11743022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 138 - 297
Target Start/End: Original strand, 45495423 - 45495582
Alignment:
Q  138 gtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatat 237  Q
    |||| |||||| |||| ||| || ||||||||||||||||||||||| || | ||   ||||||| |||||||| ||||| |||||||| ||||| ||||    
T  45495423 gtagaagaatatcccaaaaatattgctttgtctgactttgagtcaaatttccccaaggtatctttattgtttaagatgtagcaataacagccaaatatat 45495522  T
Q  238 gaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaa 297  Q
    |||| |||| |||| | ||||||||  |||||||||||||||| ||||||||||||||||    
T  45495523 gaaaatatgaaatgtttggttttcttcctttccagagttcatacggggttttgtttaaaa 45495582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 898 - 995
Target Start/End: Original strand, 11743016 - 11743116
Alignment:
Q  898 ttctccttgatcttacatgatgtgtgtatccatcccttcttgatcata-taacttcttgcggcc-aaaatgaagtttctgaatgagt-cgtacactgcac 994  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  11743016 ttctccttcatcttgcatgatgtgtgtatccatccctccttgatcatattaacttcttgcggccaaaaatgaagtttctgaatgagtccgtacactgcac 11743115  T
Q  995 a 995  Q
    |    
T  11743116 a 11743116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 163 - 297
Target Start/End: Complemental strand, 20748185 - 20748051
Alignment:
Q  163 ctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttct 262  Q
    |||| ||||| ||||| ||||||||    ||||| ||||| || |||||||| ||||||||||||||||| |||||||| ||||  ||| |||||||| |    
T  20748185 ctttatctgattttgaatcaaacttttctagattttctttattatttaaaatataacaataacatccaaaaatatgaaaatatgagatgttaggttttat 20748086  T
Q  263 atctttccagagttcatatggggttttgtttaaaa 297  Q
    || ||||||||||||||||||||||||||||||||    
T  20748085 atttttccagagttcatatggggttttgtttaaaa 20748051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 332 - 457
Target Start/End: Complemental strand, 22693830 - 22693705
Alignment:
Q  332 tgagcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaa 431  Q
    |||||| || ||||||||||||||||  |||||||   ||||||| ||| | ||| ||||||||||||||||  |||||||||||||||||||||| | |    
T  22693830 tgagcataagcatccaaggatacatggctttaacaatgtgtgagaattggactttcctatccttaataaaattcactcaagagcacacattaaataccca 22693731  T
Q  432 aataaaattataatcttaattttaat 457  Q
    |||||||||||||||||||| |||||    
T  22693730 aataaaattataatcttaatcttaat 22693705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 163 - 331
Target Start/End: Original strand, 33598109 - 33598277
Alignment:
Q  163 ctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttct 262  Q
    |||||||||| |||||||||||||| |  || || ||||| |  ||||||||||||||| |||| ||||| ||||||||||| | |||| | ||||||||    
T  33598109 ctttgtctgattttgagtcaaactttcctaggttttctttatcatttaaaatgtaacaaaaacaaccaaaaatatgaaagtaagaaatgtttggttttct 33598208  T
Q  263 atctttccagagttcatatggggttttgtttaaaatatttttgatagtaacacgatttaaaatatagca 331  Q
    || ||||||||| ||||| ||||||||||| | ||| ||| |||| | ||| | |||||||||||||||    
T  33598209 atttttccagagctcataaggggttttgttgagaatttttctgattgaaactctatttaaaatatagca 33598277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 159 - 297
Target Start/End: Complemental strand, 19754475 - 19754337
Alignment:
Q  159 atagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggtt 258  Q
    |||||||||||||| ||||| |  || || || || |||||||||||||  | ||| |||||||||||||||||||||||||| || | |||| | |  |    
T  19754475 atagctttgtctgattttgaattgaattttcttaggttatctttgttgtccagaatataacaataacatccaaagatatgaaaataagaaatgtttgact 19754376  T
Q  259 ttctatctttccagagttcatatggggttttgtttaaaa 297  Q
    |||| ||||| || |||||||| ||||||||||||||||    
T  19754375 ttctttcttttcaaagttcatacggggttttgtttaaaa 19754337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 18236449 - 18236367
Alignment:
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggtttt 289  Q
    ||||||||||| ||| |||| |||||||| ||||| || | |||| | |||||||| | ||||||||||||||||||||||||    
T  18236449 tttaaaatgtagcaaaaacagccaaagatgtgaaaataagaaatgtttggttttctgtttttccagagttcatatggggtttt 18236367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 18245900 - 18245818
Alignment:
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggtttt 289  Q
    ||||||||||| ||| |||| |||||||| ||||| || | |||| | |||||||| | ||||||||||||||||||||||||    
T  18245900 tttaaaatgtagcaaaaacagccaaagatgtgaaaataagaaatgtttggttttctgtttttccagagttcatatggggtttt 18245818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 292
Target Start/End: Original strand, 25047632 - 25047717
Alignment:
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
    ||||||||||| ||| |||| ||||| || ||||| || | |||| | |||||||| | |||||||||||||||||||||||||||    
T  25047632 tttaaaatgtagcaaaaacagccaaaaatgtgaaaataagaaatgtttggttttctgtttttccagagttcatatggggttttgtt 25047717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 292
Target Start/End: Original strand, 21209090 - 21209273
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  21209090 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 21209189  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || || || || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  21209190 cagtatgtaacaatagcagccgaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 21209273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 292
Target Start/End: Original strand, 14887809 - 14887992
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| ||| |    
T  14887809 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgct 14887908  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     || || |||||||| |||||||| || ||||| || |  ||| |||||||  | | |||||||||||||||||||||||||||    
T  14887909 caatatataacaatagcatccaaatatgtgaaaataagatatgctaggtttaatgtttttccagagttcatatggggttttgtt 14887992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 6e-52; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 332 - 509
Target Start/End: Original strand, 43460782 - 43460961
Alignment:
Q  332 tgagcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaa 431  Q
    |||||| ||||||||||||||||||| ||||||||   ||||||| ||| | ||| ||||||||||||||||  |||||||||||||||||||||||| |    
T  43460782 tgagcataatcatccaaggatacatggttttaacaatgtgtgagaattggactttcctatccttaataaaattcactcaagagcacacattaaataacca 43460881  T
Q  432 aataaaattataatcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaaca 509  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||  |||||| || |||||||||||||||||||||    
T  43460882 aataaaattatactcttaattttaatacaagagtttgtttatcatttaaaaacaagttcaaagggatttttgcttcaaca 43460961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 344 - 510
Target Start/End: Original strand, 21079063 - 21079231
Alignment:
Q  344 tccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattata 443  Q
    ||||| ||||||||  |||||||   ||||||| ||| | ||| ||||||||||||||||  ||||||||||||| |||||||||| |||||| ||||||    
T  21079063 tccaatgatacatggctttaacaatgtgtgagaattggactttcctatccttaataaaattcactcaagagcacaaattaaataaccaaataacattata 21079162  T
Q  444 atcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaacaa 510  Q
    |||||||||||||||| ||||||||||||| ||||  |||||| || ||||||||||||||||||||||    
T  21079163 atcttaattttaatacaagagtttgtttattatttaaaaacaagttcaaagggatttttgcttcaacaa 21079231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 370 - 511
Target Start/End: Original strand, 29683288 - 29683431
Alignment:
Q  370 tgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattataatcttaattttaatactagagtttgt 469  Q
    ||||||| ||| | ||| |||||||||||| |||  |||||| ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||    
T  29683288 tgtgagaattggactttcctatccttaatagaattcactcaaaagcacacattaaataaccaaataacattataatcttaattttaatacaagagtttgt 29683387  T
Q  470 ttatcattt--aaacaattttaaagggatttttgcttcaacaaa 511  Q
    |||||||||  |||||| || |||||||||||||||||||||||    
T  29683388 ttatcatttaaaaacaagttcaaagggatttttgcttcaacaaa 29683431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 135 - 297
Target Start/End: Original strand, 724690 - 724852
Alignment:
Q  135 gaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaaga 234  Q
    ||||||| ||| ||||| ||||| |||||||||||||| ||||| ||||| || |  || |||||||||||||||||||| ||||||||||||||||| |    
T  724690 gaagtagcagagtaaccgagaaatatagctttgtctgattttgaatcaaattttcctaggttatctttgttgtttaaaatataacaataacatccaaaaa 724789  T
Q  235 tatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaa 297  Q
    ||||||| || | ||||   || ||||| ||||||||||||||||| ||||||||||||||||    
T  724790 tatgaaaataagaaatgtctggctttctttctttccagagttcatacggggttttgtttaaaa 724852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 138 - 297
Target Start/End: Original strand, 15326982 - 15327141
Alignment:
Q  138 gtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatat 237  Q
    |||| |||||| |||| ||| || ||||||||||||||||||||||| || | || | ||||||| |||||||  ||||| |||||||| ||||| ||||    
T  15326982 gtagaagaatatcccaaaaatattgctttgtctgactttgagtcaaatttccccaaagtatctttattgtttaggatgtagcaataacagccaaaaatat 15327081  T
Q  238 gaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaa 297  Q
    |||| |||| |||| | || |||||  |||||||||||||||| ||||||||||||||||    
T  15327082 gaaaatatgaaatgtttggctttcttcctttccagagttcatacggggttttgtttaaaa 15327141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 163 - 331
Target Start/End: Original strand, 22454053 - 22454221
Alignment:
Q  163 ctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttct 262  Q
    |||||||||| |||||||||||||| |  || || ||||| |  |||||||| |||||| |||| ||||| |||||||| || | |||| | ||||||||    
T  22454053 ctttgtctgattttgagtcaaactttcctaggttttctttatcatttaaaatttaacaaaaacaaccaaaaatatgaaaataagaaatgtttggttttct 22454152  T
Q  263 atctttccagagttcatatggggttttgtttaaaatatttttgatagtaacacgatttaaaatatagca 331  Q
    || ||||||||| ||||| ||||||||||| | ||| ||| |||| | ||| |||||||||||||||||    
T  22454153 atttttccagagctcataaggggttttgttgagaatttttctgattgaaactcgatttaaaatatagca 22454221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 138 - 297
Target Start/End: Complemental strand, 18711787 - 18711628
Alignment:
Q  138 gtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatat 237  Q
    |||| |||||| |||| ||| || ||||||||||||||||||||||| || | ||   ||||||| |||||||  ||||| |||||||| ||||| ||||    
T  18711787 gtagaagaatatcccaaaaatattgctttgtctgactttgagtcaaatttccccaaggtatctttattgtttaggatgtagcaataacagccaaatatat 18711688  T
Q  238 gaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaa 297  Q
    |||| |||| |||| | || |||||  ||||||| |||||||| ||||||||||||||||    
T  18711687 gaaaatatgaaatgtttggctttcttcctttccaaagttcatacggggttttgtttaaaa 18711628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 30450858 - 30450948
Alignment:
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaa 297  Q
    |||||||| ||||||||||||||||| |||||||| ||||  ||| |||||||| ||| |||||||||||| |||||||||||||||||||    
T  30450858 tttaaaatataacaataacatccaaaaatatgaaaatatgagatgttaggttttatatttttccagagttcgtatggggttttgtttaaaa 30450948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 207 - 331
Target Start/End: Complemental strand, 5604320 - 5604196
Alignment:
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaatatttttga 306  Q
    |||||||| ||||||||||| ||||| || ||||| || |  ||| | |||||| ||| ||||||||||||||||||||||||||||||||| ||| | |    
T  5604320 tttaaaatataacaataacaaccaaaaatgtgaaaataagagatgtttggttttttatttttccagagttcatatggggttttgtttaaaatttttctaa 5604221  T
Q  307 tagtaacacgatttaaaatatagca 331  Q
    |||  |||||||||| |||||||||    
T  5604220 tagagacacgatttataatatagca 5604196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 24416350 - 24416259
Alignment:
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttcc-agagttcatatggggttttgtttaaaa 297  Q
    |||||||| ||||||||||||||||| |||||||| ||||  ||| |||||||| ||| ||||| ||||||| ||||| |||||||||||||    
T  24416350 tttaaaatataacaataacatccaaaaatatgaaaatatgagatgttaggttttatatttttcctagagttcgtatggagttttgtttaaaa 24416259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Original strand, 26198445 - 26198628
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  26198445 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 26198544  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  26198545 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 26198628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 33943541 - 33943358
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  33943541 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 33943442  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  33943441 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 33943358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 24296837 - 24296919
Alignment:
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggtttt 289  Q
    ||||||||||| ||| |||| |||||||| ||||| || | |||| | |||||||| | ||||||||||||||||||||||||    
T  24296837 tttaaaatgtagcaaaaacagccaaagatgtgaaaataagaaatgtttggttttctgtttttccagagttcatatggggtttt 24296919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 289
Target Start/End: Complemental strand, 20952082 - 20951902
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||||||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  20952082 ttagattgtatactctataacctttggaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 20951983  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggtttt 289  Q
     | |||||| ||||| || ||||| || ||||| || |  ||| |||||||  ||| ||||||||||||||||||||||||    
T  20951982 cagaatgtagcaatagcaaccaaatatgtgaaaataagatatgctaggtttgatatttttccagagttcatatggggtttt 20951902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 292
Target Start/End: Complemental strand, 27416298 - 27416186
Alignment:
Q  180 tcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcat 279  Q
    |||||||||| ||  || ||||| ||||| |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| ||||||||||||||    
T  27416298 tcaaacttacccaatttttctttattgttcagtatgtaacaatagcagccaaatatgtgaaagtaagatatgataggtttaatatttttccagagttcat 27416199  T
Q  280 atggggttttgtt 292  Q
    |||||||||||||    
T  27416198 atggggttttgtt 27416186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 18383961 - 18383778
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  18383961 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 18383862  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| ||| |||||||||||||||||||||||    
T  18383861 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatattttttcagagttcatatggggttttgtt 18383778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 101; Significance: 2e-49; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 332 - 509
Target Start/End: Complemental strand, 377371 - 377192
Alignment:
Q  332 tgagcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaa 431  Q
    |||||| ||||||||||||||||||| ||||||||   ||||||| ||| | ||| ||||||||||||||||  |||||| ||||||||||||||||| |    
T  377371 tgagcataatcatccaaggatacatgtttttaacaatgtgtgagaattggactttcctatccttaataaaattcactcaaaagcacacattaaataacca 377272  T
Q  432 aataaaattataatcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaaca 509  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||  |||||| || |||||||||||||||||||||    
T  377271 aataaaattatactcttaattttaatacaagagtttgtttatcatttaaaaacaagttcaaagggatttttgcttcaaca 377192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 1e-47; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 332 - 510
Target Start/End: Original strand, 28721929 - 28722108
Alignment:
Q  332 tgagcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaa 431  Q
    |||||| || ||||||||||||||||  |||||||   ||||| ||||||| ||| ||||||||||||||||  ||||||||||||||||||| |||| |    
T  28721929 tgagcataaacatccaaggatacatggctttaacaatgtgtgaaatttgaactttcctatccttaataaaattcactcaagagcacacattaa-taacca 28722027  T
Q  432 aataaaattataatcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaacaa 510  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  28722028 aataaaattataatcttaattttaatataagagtttgtttatcatttaaaaacaatttcaaagggatttttgcttcaacaa 28722108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 332 - 509
Target Start/End: Original strand, 48814561 - 48814740
Alignment:
Q  332 tgagcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaa 431  Q
    |||||| || ||||||||||||||||  |||||||   ||||| | |||   ||| ||||||||||||||||  |||||||||||||||||||||||| |    
T  48814561 tgagcataaacatccaaggatacatggctttaacaatgtgtgaaaattgggctttcctatccttaataaaattcactcaagagcacacattaaataacca 48814660  T
Q  432 aataaaattataatcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaaca 509  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||  ||| ||||| ||||||||||||| |||||||    
T  48814661 aataaaattatactcttaattttaatacaagagtttgtttatcatttaaaaataatttcaaagggatttttgtttcaaca 48814740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 135 - 297
Target Start/End: Complemental strand, 610526 - 610364
Alignment:
Q  135 gaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaaga 234  Q
    ||||||| ||| ||||| ||||| |||||||||||||| ||||| ||||| || |  || |||||||||||||||||||| ||||||||||||||||| |    
T  610526 gaagtagcagagtaaccaagaaatatagctttgtctgattttgaatcaaattttcctaggttatctttgttgtttaaaatataacaataacatccaaaaa 610427  T
Q  235 tatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaa 297  Q
    ||||||| || | ||||   || ||||| ||||||||||||||||| ||||||||||||||||    
T  610426 tatgaaaataagaaatgtctggctttctttctttccagagttcatacggggttttgtttaaaa 610364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 109 - 292
Target Start/End: Original strand, 9541360 - 9541543
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || || |||||||||| ||  || ||||| |||||    
T  9541360 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttagaatcaaacttacccaatttttctttattgtt 9541459  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  |||||||||||||| ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  9541460 cagtatgtaacaataacaaccaaatatgtgaaagtaggatatgctaggtttaatatttttccagagttcatatggggttttgtt 9541543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 174 - 298
Target Start/End: Complemental strand, 15179289 - 15179165
Alignment:
Q  174 tttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccaga 273  Q
    ||||| |||||||| |  ||||| ||||| |  |||||||| ||||||||||| ||||| |||||||| ||||  ||| |||||||| ||| ||||||||    
T  15179289 tttgaatcaaactttcctagattttctttatcatttaaaatataacaataacaaccaaaaatatgaaaatatgagatgttaggttttatatttttccaga 15179190  T
Q  274 gttcatatggggttttgtttaaaat 298  Q
    ||   ||||||||||||||||||||    
T  15179189 gtaagtatggggttttgtttaaaat 15179165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 292
Target Start/End: Original strand, 16138304 - 16138487
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  16138304 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 16138403  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| ||||||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  16138404 cagtatgtaacaatagcagccaaaaatatgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 16138487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Original strand, 5388035 - 5388218
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  5388035 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 5388134  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  5388135 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 5388218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 6538698 - 6538515
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  6538698 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 6538599  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  6538598 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 6538515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 8505270 - 8505087
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  8505270 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 8505171  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  8505170 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 8505087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Original strand, 26354419 - 26354602
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  26354419 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 26354518  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  26354519 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 26354602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 32102601 - 32102418
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  32102601 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 32102502  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  32102501 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 32102418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 44901578 - 44901395
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  44901578 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 44901479  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  44901478 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 44901395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 46501335 - 46501152
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  46501335 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 46501236  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  46501235 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 46501152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 1e-47; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 332 - 510
Target Start/End: Complemental strand, 24843294 - 24843114
Alignment:
Q  332 tgagcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaa 431  Q
    |||||| || ||||||||||||||||  |||||||   ||||||| ||| | ||| ||||||||||||||||  |||||||||||||||||||||||| |    
T  24843294 tgagcataagcatccaaggatacatggctttaacaatgtgtgagaattggactttcctatccttaataaaattcactcaagagcacacattaaataacca 24843195  T
Q  432 aataaaattataatcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaacaa 510  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||||||| ||||||||    
T  24843194 aataaaattatactcttaattttaatacaagagtttgtttatcatttaaaaacaatttcaaagggatttttgtttcaacaa 24843114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 332 - 509
Target Start/End: Original strand, 6082108 - 6082287
Alignment:
Q  332 tgagcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaa 431  Q
    |||||| || ||||||| ||||||||  |||||||   ||||||| ||| | ||| ||||||||||||||||  |||||||||||||||||||||||| |    
T  6082108 tgagcataagcatccaaagatacatggctttaacaatgtgtgagaattggactttcctatccttaataaaattcactcaagagcacacattaaataacca 6082207  T
Q  432 aataaaattataatcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaaca 509  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  |||||| || |||||||||||||||||||||    
T  6082208 aataaaattataatcttaattttaatacaagagtttgtttatcatttaaaaacaagttcaaagggatttttgcttcaaca 6082287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 135 - 297
Target Start/End: Complemental strand, 8998640 - 8998478
Alignment:
Q  135 gaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaaga 234  Q
    ||||||| ||| ||||| ||||| |||||||||||||| ||||| ||||| || |  || |||||||||||||||||||| ||||||||||||||||| |    
T  8998640 gaagtagcagagtaaccaagaaatatagctttgtctgattttgaatcaaattttcctaggttatctttgttgtttaaaatataacaataacatccaaaaa 8998541  T
Q  235 tatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaa 297  Q
    ||||||| || | ||||   || ||||| ||||||||||||||||| ||||||||||||||||    
T  8998540 tatgaaaataagaaatgtctggctttctttctttccagagttcatacggggttttgtttaaaa 8998478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 135 - 297
Target Start/End: Complemental strand, 9007810 - 9007647
Alignment:
Q  135 gaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaaga 234  Q
    ||||||| ||| ||||| ||||| |||||||||||||||||||| ||||| || |  || |||||||||||||||||||| ||||||||||||||||| |    
T  9007810 gaagtagcagagtaaccaagaaatatagctttgtctgactttgaatcaaattttcctaggttatctttgttgtttaaaatataacaataacatccaaaaa 9007711  T
Q  235 tatgaaagtatgcaatggtaggttttctatc-tttccagagttcatatggggttttgtttaaaa 297  Q
    ||||||| || | ||||   || ||||| || |||| |||||||||| ||||||||||||||||    
T  9007710 tatgaaaataagaaatgtctggctttctttcttttctagagttcatacggggttttgtttaaaa 9007647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 168 - 297
Target Start/End: Complemental strand, 11377557 - 11377428
Alignment:
Q  168 tctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctt 267  Q
    ||||| |||| ||||||| | | |||| ||||||||||||||| |||||| ||||||||||||||||| ||||| |||| |||| | || |||||  |||    
T  11377557 tctgattttgggtcaaacattcccagactatctttgttgtttagaatgtagcaataacatccaaagatgtgaaaatatgaaatgtttggctttcttcctt 11377458  T
Q  268 tccagagttcatatggggttttgtttaaaa 297  Q
    | ||||||||||| ||||||||||||||||    
T  11377457 tacagagttcatacggggttttgtttaaaa 11377428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 163 - 289
Target Start/End: Original strand, 27747224 - 27747350
Alignment:
Q  163 ctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttct 262  Q
    |||||||||| ||||| |||||||| |  ||||||||||||||||||| ||| || ||||||||||||||||| ||||| |||| |||| | || |||||    
T  27747224 ctttgtctgattttgaatcaaactttcctagattatctttgttgtttagaatatagcaataacatccaaagatgtgaaaatatgaaatgtttggctttct 27747323  T
Q  263 atctttccagagttcatatggggtttt 289  Q
      |||| ||||||||||| ||||||||    
T  27747324 tccttttcagagttcatacggggtttt 27747350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 297
Target Start/End: Complemental strand, 17946252 - 17946063
Alignment:
Q  108 cttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgt 207  Q
    ||||||||||||| || ||||  ||| || ||||  ||||| |||| ||| |  ||||||||||| |||||||||||||| | ||   | ||||||||||    
T  17946252 cttagattataaattctataggcttttgatgtagatgaatatcccaaaaataatgctttgtctgattttgagtcaaactttcccaagatgtctttgttgt 17946153  T
Q  208 ttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaa 297  Q
    | || ||||||  |||||||||||| |||||||| |||| |||| | |  |||||  ||||| ||||||||||  | |||||||||||||    
T  17946152 tcaagatgtaaagataacatccaaaaatatgaaaatatgaaatgtttgcctttcttcctttctagagttcatacagagttttgtttaaaa 17946063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 18164286 - 18164103
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  18164286 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 18164187  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  18164186 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 18164103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Original strand, 24928285 - 24928468
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  24928285 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 24928384  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  24928385 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 24928468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 31361040 - 31360857
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  31361040 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 31360941  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  31360940 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 31360857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 25898216 - 25898134
Alignment:
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggtttt 289  Q
    ||||||||||| ||| |||| |||||||| ||||| || | |||| | |||||||| | ||||||||||||||||||||||||    
T  25898216 tttaaaatgtagcaaaaacagccaaagatgtgaaaataagaaatgtttggttttctgtttttccagagttcatatggggtttt 25898134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 16902167 - 16901984
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  16902167 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 16902068  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||| ||||||||    
T  16902067 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttgatatttttccagagttcatatggtgttttgtt 16901984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 344 - 511
Target Start/End: Complemental strand, 9656535 - 9656366
Alignment:
Q  344 tccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattata 443  Q
    ||||| ||||||||  |||||||   ||||||| ||| | ||| ||||||||||||||||  |||||||||||||||||||||||| |||||| ||||||    
T  9656535 tccaatgatacatggctttaacaatgtgtgagaattggactttcctatccttaataaaattcactcaagagcacacattaaataaccaaataacattata 9656436  T
Q  444 atcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaacaaa 511  Q
    |||||||||||||||| ||||||||||||||||||  |||||| || |||||||||||||||||||||||    
T  9656435 atcttaattttaatacaagagtttgtttatcatttaaaaacaagttcaaagggatttttgcttcaacaaa 9656366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 135 - 297
Target Start/End: Complemental strand, 24992847 - 24992685
Alignment:
Q  135 gaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaaga 234  Q
    ||||||| ||| ||||| ||||| |||||||||||||||||||| ||||| ||    || |||||||||||||||||||| |||||||| |||||||| |    
T  24992847 gaagtagcagagtaaccaagaaatatagctttgtctgactttgaatcaaatttttctaggttatctttgttgtttaaaatataacaatagcatccaaaaa 24992748  T
Q  235 tatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaa 297  Q
    ||||||| || | ||||   || ||||| ||||||||||||||||| ||||||||||||||||    
T  24992747 tatgaaaataagaaatgtctggctttctttctttccagagttcatacggggttttgtttaaaa 24992685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 207 - 331
Target Start/End: Complemental strand, 1794705 - 1794581
Alignment:
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaatatttttga 306  Q
    |||||||| ||||||||||| ||||| || ||||| || |  ||| | |||||| ||| ||||||||||||||||||||||||||||||||| ||| | |    
T  1794705 tttaaaatataacaataacaaccaaaaatgtgaaaataagagatgtttggttttttatttttccagagttcatatggggttttgtttaaaatttttctaa 1794606  T
Q  307 tagtaacacgatttaaaatatagca 331  Q
    |||  |||||||||| |||||||||    
T  1794605 tagagacacgatttataatatagca 1794581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 289
Target Start/End: Original strand, 27166100 - 27166280
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||||||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  27166100 ttagattgtatactctataacctttggaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 27166199  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggtttt 289  Q
     | |||||| ||||| |||||||| || ||||| || |  ||| |||||||  ||| ||||||||||||||||||||||||    
T  27166200 cagaatgtagcaatagcatccaaatatgtgaaaataagatatgctaggtttgatatttttccagagttcatatggggtttt 27166280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Original strand, 9509884 - 9510067
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  9509884 ttagattgtatactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 9509983  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  9509984 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 9510067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 293
Target Start/End: Complemental strand, 13945586 - 13945443
Alignment:
Q  150 cccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaa 249  Q
    |||||||| |||||||||||||| ||| | |||||||| |  | ||| || || ||||||||||||||||||||||||  ||||||| |||| |||| ||    
T  13945586 cccagaaatatagctttgtctgatttttaatcaaacttgcctaaattttccttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaa 13945487  T
Q  250 tggtaggttttctatctttccagagttcatatggggttttgttt 293  Q
    || | || ||||| | ||| || |||||||| | | ||||||||    
T  13945486 tgtttggctttcttttttttcatagttcatacgtgattttgttt 13945443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 293
Target Start/End: Complemental strand, 14086775 - 14086632
Alignment:
Q  150 cccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaa 249  Q
    |||||||| |||||||||||||| ||| | |||||||| |  | ||| || || ||||||||||||||||||||||||  ||||||| |||| |||| ||    
T  14086775 cccagaaatatagctttgtctgatttttaatcaaacttgcctaaattttccttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaa 14086676  T
Q  250 tggtaggttttctatctttccagagttcatatggggttttgttt 293  Q
    || | || ||||| | ||| || |||||||| | | ||||||||    
T  14086675 tgtttggctttcttttttttcatagttcatacgtgattttgttt 14086632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 18655439 - 18655256
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  18655439 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 18655340  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  18655339 cagtatgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 18655256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 45018571 - 45018388
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||| ||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  45018571 ttagattgtacactctataacctttagaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 45018472  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
     |  ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  45018471 cagtatgtaacaatagcagccaaatatgtgaaagtaggatatgctaggtttaatatttttccagagttcatatggggttttgtt 45018388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 289
Target Start/End: Complemental strand, 22906366 - 22906186
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||||||||| |||||||| || | |||||||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  22906366 ttagattgtatactctataacctttggaagttgtagaatatcctaaaaaaatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 22906267  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggtttt 289  Q
     | |||||| ||||| || ||||| || ||||| || |  ||| |||||||  ||| |||| |||||||||||| ||||||    
T  22906266 cagaatgtagcaatagcagccaaatatgtgaaaataagatatgctaggtttgatatttttctagagttcatatgaggtttt 22906186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 344 - 509
Target Start/End: Complemental strand, 16378 - 16211
Alignment:
Q  344 tccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattata 443  Q
    ||||| ||||||||  |||||||   ||||||| ||| |||||  |||||||||||||||  |||||||||||||||||||||||| |||||| ||||||    
T  16378 tccaatgatacatggctttaacaatgtgtgagaattggattttcttatccttaataaaattcactcaagagcacacattaaataaccaaataacattata 16279  T
Q  444 atcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaaca 509  Q
    |||||||||||||||| ||||||||||||||||||  |||||| || |||||||||||||||||||||    
T  16278 atcttaattttaatacaagagtttgtttatcatttaaaaacaagttcaaagggatttttgcttcaaca 16211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 344 - 509
Target Start/End: Original strand, 21097 - 21264
Alignment:
Q  344 tccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattata 443  Q
    ||||| ||||||||  |||||||   ||||||| ||| | ||| ||||||||||||||||  |||||||||||||||||||||||| |||||| ||||||    
T  21097 tccaatgatacatggctttaacaacgtgtgagaattggactttcctatccttaataaaattcactcaagagcacacattaaataaccaaataacattata 21196  T
Q  444 atcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaaca 509  Q
    |||||||||||||||| ||||||||||||||||||  |||||| || |||||||||||||||||||||    
T  21197 atcttaattttaatacaagagtttgtttatcatttaaaaacaagttcaaagggatttttgcttcaaca 21264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 344 - 510
Target Start/End: Original strand, 19000 - 19168
Alignment:
Q  344 tccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattata 443  Q
    ||||| ||||||||  |||||||   ||||||| ||| | ||| ||||||||||||||||  ||||||||||||||||| |||||| |||||| ||||||    
T  19000 tccaatgatacatggctttaacaatgtgtgagaattggactttcctatccttaataaaattcactcaagagcacacattcaataaccaaataacattata 19099  T
Q  444 atcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaacaa 510  Q
    |||||||||||||||| ||||||||||||||||||  |||||| || ||||||||||||||||||||||    
T  19100 atcttaattttaatacaagagtttgtttatcatttaaaaacaagttcaaagggatttttgcttcaacaa 19168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 85; Significance: 6e-40; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 332 - 509
Target Start/End: Complemental strand, 41608 - 41430
Alignment:
Q  332 tgagcacaatcatccaaggatacatgattttaacataatgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaa 431  Q
    |||||| |||||||||||||||||||  ||||| |   ||||| |  || | ||| ||||||||||||||||  |||||||||||||||||||||||| |    
T  41608 tgagcataatcatccaaggatacatggctttaagaatgtgtgataaatggactttcctatccttaataaaattcactcaagagcacacattaaataacca 41509  T
Q  432 aataaaattataatcttaattttaatactagagtttgtttatcattt--aaacaattttaaagggatttttgcttcaaca 509  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||  |||||| || |||||||||||||||||||||    
T  41508 aataaaa-tataatcttaattttaatacaagagtttgtttatcatttaaaaacaagttcaaagggatttttgcttcaaca 41430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 83; Significance: 9e-39; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 370 - 509
Target Start/End: Original strand, 8393 - 8534
Alignment:
Q  370 tgtgagatttgaatttttctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattataatcttaattttaatactagagtttgt 469  Q
    ||||||| ||| | ||| ||||| ||||||||||  |||||| ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||    
T  8393 tgtgagaattggactttcctatcattaataaaattcactcaaaagcacacattaaataaccaaataacattataatcttaattttaatacaagagtttgt 8492  T
Q  470 ttatcattt--aaacaattttaaagggatttttgcttcaaca 509  Q
    |||||||||  |||||| ||||||||||||||||||||||||    
T  8493 ttatcatttaaaaacaagtttaaagggatttttgcttcaaca 8534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 455 - 510
Target Start/End: Original strand, 1 - 58
Alignment:
Q  455 aatactagagtttgtttatcatttaaa--caattttaaagggatttttgcttcaacaa 510  Q
    ||||| |||||||||||||||||||||  ||| |||||||||||||||||||||||||    
T  1 aatacaagagtttgtttatcatttaaaaacaagtttaaagggatttttgcttcaacaa 58  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 388 - 509
Target Start/End: Complemental strand, 38803 - 38680
Alignment:
Q  388 ctatccttaataaaatcgactcaagagcacacattaaataacaaaataaaattataatcttaattttaatactagagtttgtttatcattt--aaacaat 485  Q
    ||||||| ||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||     
T  38803 ctatcctaaataaaattcactcaagagcacacattaaataaccaaataaaattataatcttaattttaatacaagagtttgtttatcatttaaaaacaag 38704  T
Q  486 tttaaagggatttttgcttcaaca 509  Q
    || ||||||||||||| |||||||    
T  38703 ttcaaagggatttttgtttcaaca 38680  T

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Target: scaffold0096; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 135 - 297
Target Start/End: Complemental strand, 52809 - 52647
Alignment:
Q  135 gaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaaga 234  Q
    ||||||| ||| ||||| ||||| |||||||||||||| ||||| ||||| || |  || |||||||||||||||||||| |||||||| |||||||| |    
T  52809 gaagtagcagagtaaccaagaaatatagctttgtctgattttgaatcaaattttcctaggttatctttgttgtttaaaatataacaatatcatccaaaaa 52710  T
Q  235 tatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaa 297  Q
    ||||||| || | ||||   || ||||| ||||||||||||||||| ||||||||||||||||    
T  52709 tatgaaaataagaaatgtctggctttctttctttccagagttcatacggggttttgtttaaaa 52647  T

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Target: scaffold0021 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 163 - 297
Target Start/End: Complemental strand, 167043 - 166909
Alignment:
Q  163 ctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttct 262  Q
    |||| ||||| |||| ||||||||| |||||| ||||||||||||||| ||| || ||||||||||||||||| ||||| |||| |||| | || |||||    
T  167043 ctttatctgattttgggtcaaactttctcagactatctttgttgtttagaatatagcaataacatccaaagatgtgaaaatatgaaatgtttggctttct 166944  T
Q  263 atctttccagagttcatatggggttttgtttaaaa 297  Q
      |||||||||||||||||||||||||||||||||    
T  166943 ccctttccagagttcatatggggttttgtttaaaa 166909  T

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Target: scaffold0500 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 147 - 297
Target Start/End: Complemental strand, 9725 - 9575
Alignment:
Q  147 taacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatg 246  Q
    ||||| ||||| |||||||||||||||||||| ||||| || |  || |||||||||||||||||||| |||||||  |||||||| |||||||| || |    
T  9725 taaccaagaaatatagctttgtctgactttgaatcaaattttcctaggttatctttgttgtttaaaatataacaattgcatccaaaaatatgaaaataag 9626  T
Q  247 caatggtaggttttctatctttccagagttcatatggggttttgtttaaaa 297  Q
     |||| | || ||||| | ||||||||||| ||| |||||||| |||||||    
T  9625 aaatgtttggctttctttttttccagagttgatacggggttttatttaaaa 9575  T

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Target: scaffold0028 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 100556 - 100647
Alignment:
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtttaaaat 298  Q
    |||||||| ||||||||||||||||| |||||||| ||||  ||| |||||||| ||| |||||||||||| ||||||||||||||||||||    
T  100556 tttaaaatataacaataacatccaaaaatatgaaaatatgagatgttaggttttatatttttccagagttcgtatggggttttgtttaaaat 100647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 135 - 280
Target Start/End: Complemental strand, 85574 - 85429
Alignment:
Q  135 gaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaaga 234  Q
    ||||||| ||| ||||| ||||| |||||||||||||||||||| ||||| ||    || || ||||||||||||||||| |||||||| |||||||| |    
T  85574 gaagtagcagagtaaccaagaaatatagctttgtctgactttgaatcaaatttttctaggttctctttgttgtttaaaatataacaatagcatccaaaaa 85475  T
Q  235 tatgaaagtatgcaatggtaggttttctatctttccagagttcata 280  Q
    ||||||| || | |||| | || ||||| |||||| ||||||||||    
T  85474 tatgaaattaagaaatgtttggctttctttctttcgagagttcata 85429  T

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Target: scaffold0288 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 394 - 511
Target Start/End: Complemental strand, 17300 - 17183
Alignment:
Q  394 ttaataaaatcgactcaagagcacacattaaataacaaaataaaattataatcttaattttaatactagagtttgtttatcatttaaaca-attttaaag 492  Q
    ||||||||||  |||||| ||||||||| ||||||||| |||| ||||||||||||| ||||| || ||||||||||||||| ||||| | | |||||||    
T  17300 ttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacttaaaaacaatttaaag 17202  T
Q  493 ggatttttgcttcaacaaa 511  Q
    || ||||||||||||||||    
T  17201 gggtttttgcttcaacaaa 17183  T

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Target: scaffold0049 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 163 - 289
Target Start/End: Complemental strand, 18754 - 18628
Alignment:
Q  163 ctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttct 262  Q
    |||||||||| |||||||||||||| | || | ||||| ||||||||| ||| || ||||| ||||||||||| ||||| |||| |||| | || |||||    
T  18754 ctttgtctgattttgagtcaaactttcccaaactatctctgttgtttagaatatagcaatagcatccaaagatgtgaaaatatgaaatgtttggctttct 18655  T
Q  263 atctttccagagttcatatggggtttt 289  Q
      |||||||||||||||| ||||||||    
T  18654 tcctttccagagttcatacggggtttt 18628  T

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Target: scaffold0049; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 292
Target Start/End: Original strand, 84779 - 84891
Alignment:
Q  180 tcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcat 279  Q
    |||||||||| || ||| ||||| ||||| |  || ||||||||||| ||||| || ||||| || |  ||| |||||||  ||| ||||||||||||||    
T  84779 tcaaacttacccaaattttctttattgttcagtatataacaataacagccaaatatgtgaaaataagatatgctaggtttaatatttttccagagttcat 84878  T
Q  280 atggggttttgtt 292  Q
    ||||| |||||||    
T  84879 atgggattttgtt 84891  T

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Target: scaffold0010 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 292
Target Start/End: Complemental strand, 260591 - 260506
Alignment:
Q  207 tttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
    ||||||||||| ||| |||| |||||||| ||||| || | |||| | |||||||| | |||||||||||||||||||||||||||    
T  260591 tttaaaatgtagcaaaaacagccaaagatgtgaaaataagaaatgtttggttttctgtttttccagagttcatatggggttttgtt 260506  T

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Target: scaffold0313 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 289
Target Start/End: Complemental strand, 13778 - 13598
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||||||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  13778 ttagattgtatactctataacctttggaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 13679  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggtttt 289  Q
     | |||||| ||||| || ||||| || ||||| || |  ||| |||||||  ||| ||||||||||||||||||||||||    
T  13678 cagaatgtagcaatagcagccaaatatgtgaaaataagatatgctaggtttgatatttttccagagttcatatggggtttt 13598  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 289
Target Start/End: Complemental strand, 149234 - 149054
Alignment:
Q  109 ttagattataaactccatagcttttggaagtagtagaataacccagaaaaatagctttgtctgactttgagtcaaacttactcagattatctttgttgtt 208  Q
    ||||||| || |||| ||| | ||||||||| ||||| || || | ||| |||||||| ||||| || |  |||||||||| ||  || ||||| |||||    
T  149234 ttagattgtatactctataacctttggaagttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgtt 149135  T
Q  209 taaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggtttt 289  Q
     | |||||| ||||| |||||||| || ||||| || |  ||| |||||||  ||| |||||| |||||||||||||||||    
T  149134 cagaatgtagcaatagcatccaaatatgtgaaaataagatatgctaggtttgatatttttccatagttcatatggggtttt 149054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 14203 - 14282
Alignment:
Q  213 atgtaacaataacatccaaagatatgaaagtatgcaatggtaggttttctatctttccagagttcatatggggttttgtt 292  Q
    ||||||||||| || ||||| || |||||||| |  ||| |||||||  ||| |||||||||||||||||||||||||||    
T  14203 atgtaacaatagcagccaaaaatgtgaaagtaagatatgctaggtttaatatttttccagagttcatatggggttttgtt 14282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 292
Target Start/End: Complemental strand, 30054 - 29921
Alignment:
Q  159 atagctttgtctgactttgagtcaaacttactcagattatctttgttgtttaaaatgtaacaataacatccaaagatatgaaagtatgcaatggtaggtt 258  Q
    |||||||| ||||| || |  |||||||||| ||  || ||||| ||||| |  |||||||||||||| ||||| || ||||| || |  ||| ||||||    
T  30054 atagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaataacagccaaatatgtgaaaataagatatgctaggtt 29955  T
Q  259 ttctatctttccagagttcatatggggttttgtt 292  Q
    |  | | ||||||||||||||||||| |||||||    
T  29954 taatgtttttccagagttcatatgggattttgtt 29921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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