View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5109-Insertion-2 (Length: 981)

Name: NF5109-Insertion-2
Description: NF5109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5109-Insertion-2
NF5109-Insertion-2
[»] chr5 (8 HSPs)
chr5 (8-979)||(8702816-8703780)
chr5 (636-939)||(24870300-24870600)
chr5 (357-540)||(8693080-8693265)
chr5 (632-939)||(24275112-24275416)
chr5 (632-939)||(24386797-24387101)
chr5 (661-858)||(30304769-30304966)
chr5 (556-624)||(8693253-8693321)
chr5 (636-704)||(10032435-10032503)
[»] chr1 (13 HSPs)
chr1 (636-939)||(17321745-17322045)
chr1 (629-825)||(12539097-12539293)
chr1 (636-939)||(10395299-10395599)
chr1 (636-861)||(27877646-27877871)
chr1 (636-829)||(3601159-3601355)
chr1 (636-829)||(2114333-2114526)
chr1 (814-942)||(12538964-12539089)
chr1 (636-803)||(40609930-40610097)
chr1 (760-827)||(32544406-32544473)
chr1 (765-807)||(44839927-44839969)
chr1 (764-801)||(2536551-2536588)
chr1 (764-801)||(6784283-6784320)
chr1 (764-801)||(11351666-11351703)
[»] chr3 (9 HSPs)
chr3 (636-910)||(10346425-10346697)
chr3 (636-858)||(1017567-1017789)
chr3 (636-939)||(26730812-26731112)
chr3 (659-939)||(47703699-47703976)
chr3 (636-905)||(4525378-4525642)
chr3 (661-781)||(20223177-20223296)
chr3 (764-801)||(8705717-8705754)
chr3 (764-801)||(9057604-9057641)
chr3 (764-801)||(36684910-36684947)
[»] chr7 (10 HSPs)
chr7 (636-939)||(9451330-9451630)
chr7 (636-840)||(17852310-17852514)
chr7 (636-826)||(20492460-20492653)
chr7 (643-858)||(12129439-12129654)
chr7 (636-918)||(36677506-36677787)
chr7 (747-807)||(12980729-12980789)
chr7 (636-712)||(20528964-20529040)
chr7 (636-795)||(10325008-10325166)
chr7 (628-699)||(12980813-12980884)
chr7 (764-829)||(21118372-21118437)
[»] chr2 (5 HSPs)
chr2 (636-939)||(41315806-41316106)
chr2 (659-939)||(28589916-28590193)
chr2 (655-952)||(10977614-10977908)
chr2 (766-807)||(6860501-6860542)
chr2 (764-801)||(29894390-29894427)
[»] scaffold0151 (1 HSPs)
scaffold0151 (636-863)||(21292-21518)
[»] scaffold0010 (1 HSPs)
scaffold0010 (659-858)||(255330-255529)
[»] chr8 (6 HSPs)
chr8 (636-840)||(26951381-26951585)
chr8 (749-939)||(21276442-21276629)
chr8 (636-952)||(33324566-33324875)
chr8 (631-830)||(9808652-9808851)
chr8 (873-939)||(23556604-23556668)
chr8 (764-829)||(26440783-26440848)
[»] chr4 (11 HSPs)
chr4 (636-939)||(16889012-16889311)
chr4 (636-828)||(35096886-35097078)
chr4 (673-939)||(23059319-23059582)
chr4 (636-834)||(37856911-37857109)
chr4 (636-805)||(49407016-49407185)
chr4 (680-812)||(9633052-9633184)
chr4 (657-829)||(17283484-17283655)
chr4 (644-807)||(1479180-1479343)
chr4 (764-807)||(1394124-1394167)
chr4 (636-685)||(5124521-5124570)
chr4 (764-801)||(19315959-19315996)
[»] chr6 (6 HSPs)
chr6 (636-941)||(32899771-32900073)
chr6 (636-840)||(11657601-11657804)
chr6 (636-861)||(13104311-13104536)
chr6 (659-850)||(27862053-27862235)
chr6 (634-698)||(29021910-29021974)
chr6 (764-801)||(4513077-4513114)


Alignment Details
Target: chr5 (Bit Score: 809; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 809; E-Value: 0
Query Start/End: Original strand, 8 - 979
Target Start/End: Original strand, 8702816 - 8703780
Alignment:
Q  8 cagattttgataattctcaattgagattgttcagcacaatctccttcaaaaggataatgcattatttaccattacactccaaattgatcaataattaaac 107  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||   |||||    
T  8702816 cagattttgataattctcaattgaaattgttcagcacaatctccttcaaaagtataatgcattatttaccattacactccaaattgatcaat---taaac 8702912  T
Q  108 ttgatatggactgaatatacagcatttttaattaccaataattatatgaaaagcttagcatgcagacatgtcggtcactttccttttcctccaaatgtct 207  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8702913 ttgatatggactgaatatacagcatttataattactaataattatatgaaaagcttagcatgcagacatgtcggtcactttccttttcctccaaatgtct 8703012  T
Q  208 tcttttatatcgtcgtgagtagaaaacgtaaacagtgtgtagccataaaaaacacgtaaacagtattttctatactttatattctttaattaatttataa 307  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8703013 tcttttatatcgt---gagtagaaaacgtaaacagtgtgtagccataaaaaacacgtaaacagtattttctatactttatattctttaattaatttataa 8703109  T
Q  308 acgacaattatttgtgcctgatatagatagcatgagatgagacatattgatatttaattgaaccgatccatagaattagaattaaataatataaactgct 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8703110 acgacaattatttgtgcctgatatagatagcatgagatgagacatattgatatttaattgaaccgatccatagaattagaattaaataatataaactgct 8703209  T
Q  408 tccttgtcaacttcaatatacatcagagcagtgcactaggcctatgcatttggagcaacttgtgacttgtatcccaatcggggcattagtggtattatga 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8703210 tccttgtcaacttcaatatacatcagagcagtgcactaggcctatgcatttggagcaacttgtgacttgtatcccaatcgaggcattagtggtattatga 8703309  T
Q  508 gatatttatatgtgtttgtatctagaaggaagacaataattgtgtgtatctagaaggaagacaaatcagaaaagtatttataataatgcatcactttgtt 607  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  8703310 gatatttatatgtgtttgtatctagaaggaaggcaataattgtgtgtatctagaaggaaggcaaatcagaaaagtattcataataatgcatcactttgtt 8703409  T
Q  608 ccaaacaaaaatagctggccattatttatttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataa 707  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||||||||   |||||||||    
T  8703410 ccaaacaaaaatagctggccattatttatttttaaggaggaaattcattgtattttattagttaaaatatgtcaaatatatgagggta---catcaataa 8703506  T
Q  708 tatgggtgctagaattagatagagttgcctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctatt 807  Q
    ||| |||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||||| |||||||||||| ||||||||||    
T  8703507 tataggtgctagaattagatagggttgcctgatctaacccgtaagctaccctattcgcttgcctcgtgttgaacacaacatgagagttccgaaatctatt 8703606  T
Q  808 cactatcaactgtttacaagcagtaatattacactcaaattcggtactatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgc 907  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  8703607 cactatcaactgtttacaagcaggaatattacacccaaattcggtactatcatcaatgtttgaa-ttgacactatcaacaactcttttacaatcaagtgc 8703705  T
Q  908 aaaatcaacatattgtcaaactgttgattagaaatggaatcc-aagtcgtgtgc-atcc-acaacctcccctacg 979  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||    
T  8703706 aaaatcaacatattgtcaaactgttgattagaaatcgaatccaaagtcgtgtgcaatccaacaacctcccctacg 8703780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 636 - 939
Target Start/End: Complemental strand, 24870600 - 24870300
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    ||||| ||||||||| || ||| |||||||||  |||||||| |||||||||||  |||||||||||||||||||||  | |||  ||||| || | |||    
T  24870600 ttttttaggaagaaaatcattgcatttcattagctaaaatatatcaaatatatgtaggtacatcatcaataatatggaggttagggttagacagggctgc 24870501  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
     ||| ||||| |||| ||||||||||| | |||||| ||||||||| | || |||||||||||||||||||  |||| || ||||||||||||||| |||    
T  24870500 ttgagctaactcgtgtgctatcctatttgtttgccttctgttgaactcaacttgagagttctgaaatctatctactagcagctgtttacaagcagtgata 24870401  T
Q  836 ttacactcaaattcggtactatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgttgat 935  Q
     |||| ||||| ||| |||||||||| |   | ||| ||||||| ||||||||| |||||||||||||| |||||||| ||  ||||||||||| |||||    
T  24870400 atacattcaaactcgctactatcatctaaactagaa-ttgacacaatcaacaacccttttacaatcaagagcaaaatcgac--attgtcaaactattgat 24870304  T
Q  936 taga 939  Q
    ||||    
T  24870303 taga 24870300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 357 - 540
Target Start/End: Original strand, 8693080 - 8693265
Alignment:
Q  357 atatttaattgaaccgatccatagaattagaatta-aat--aatat---aaactgcttccttgtcaacttcaatatacatcagagcagtgcactaggcct 450  Q
    ||||||||||||| ||||||||||||||||||||| |||  |||||   ||| |||||| ||||||| |||||    ||||||| || ||||||||||||    
T  8693080 atatttaattgaatcgatccatagaattagaattagaattaaatatgacaaattgcttcattgtcaatttcaa----catcagatcaatgcactaggcct 8693175  T
Q  451 atgcatttggagcaacttgtgacttgtatcccaatcggggcattagtggtattatgagatatttatatgtgtttgtatctagaaggaaga 540  Q
    ||||||||||||| |||||||||||| |||||||||  |||||| ||||||||| ||||||||||||| | ||| | |||||||||||||    
T  8693176 atgcatttggagcgacttgtgacttgcatcccaatcttggcattggtggtattaagagatatttatatatctttctttctagaaggaaga 8693265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 632 - 939
Target Start/End: Complemental strand, 24275416 - 24275112
Alignment:
Q  632 tttatttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagag 731  Q
    |||||||| | |||||||| || ||||||||||||| |||||||||| |||||| |||   ||||||||||||| | ||||| ||||| ||||||||| |    
T  24275416 tttattttgagggaagaaaatcattgtatttcattagttaaaatatgccaaatacatgtaagtacatcatcaatcacatgggggctaggattagataggg 24275317  T
Q  732 ttgcctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagt 831  Q
     ||||||| ||||| ||||||||| | |||| |||||||| |   ||||| | ||||||| |||||||||| |||  |||| ||  ||||||||||||||    
T  24275316 atgcctgagctaactcgtgagctaccttatttgcttgccttcgactgaactcaacatgagtgttctgaaatttatcaactagcagttgtttacaagcagt 24275217  T
Q  832 aatattacactcaaattcggtactatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgt 931  Q
     |||  |||  |||| ||| ||||||| || |   | ||| ||||||| |||||||||  |||||||||||||  ||||||| ||  ||| |||||||||    
T  24275216 gataaaacatccaaactcgctactatcttctagactagaa-ttgacacaatcaacaacctttttacaatcaagaacaaaatctac--attatcaaactgt 24275120  T
Q  932 tgattaga 939  Q
    ||||||||    
T  24275119 tgattaga 24275112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 632 - 939
Target Start/End: Original strand, 24386797 - 24387101
Alignment:
Q  632 tttatttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagag 731  Q
    |||||||| | |||||||| || ||||||||||||| |||||||||| |||||| |||   ||||||||||||| | ||||| ||||| ||||||||| |    
T  24386797 tttattttgagggaagaaaatcattgtatttcattagttaaaatatgccaaatacatgtaagtacatcatcaatcacatgggggctaggattagataggg 24386896  T
Q  732 ttgcctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagt 831  Q
     ||||||| ||||| ||||||||| | |||| |||||||| |   ||||| | ||||||| |||||||||| |||  |||| ||  ||||||||||||||    
T  24386897 atgcctgagctaactcgtgagctaccttatttgcttgccttcgactgaactcaacatgagtgttctgaaatttatcaactagcagttgtttacaagcagt 24386996  T
Q  832 aatattacactcaaattcggtactatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgt 931  Q
     |||  |||  |||| ||| ||||||| || |   | ||| ||||||| |||||||||  |||||||||||||  ||||||| ||  ||| |||||||||    
T  24386997 gataaaacatccaaactcgctactatcttctagactagaa-ttgacacaatcaacaacctttttacaatcaagaacaaaatctac--attatcaaactgt 24387093  T
Q  932 tgattaga 939  Q
    ||||||||    
T  24387094 tgattaga 24387101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 661 - 858
Target Start/End: Complemental strand, 30304966 - 30304769
Alignment:
Q  661 ttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgcctgatctaacccgtgagctatccta 760  Q
    |||||||  ||||||||| |||||| |||  |||| ||||||||| | ||||| ||||| ||||||||| | ||||||| ||||| ||||||||| ||||    
T  30304966 ttcattagataaaatatgccaaatacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagctaactcgtgagctacccta 30304867  T
Q  761 ttcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaatattacactcaaattcggtactatc 858  Q
    || |||||||||| | ||||| | ||||||||||||||||| ||||  |||| || ||||||||||||||| ||| ||||  |||| ||| |||||||    
T  30304866 tttgcttgcctccggctgaactcaacatgagagttctgaaaactatcaactagcagctgtttacaagcagtgataatacatccaaactcgctactatc 30304769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 556 - 624
Target Start/End: Original strand, 8693253 - 8693321
Alignment:
Q  556 tctagaaggaagacaaatcagaaaagtatttataataatgcatcactttgttccaaacaaaaatagctg 624  Q
    ||||||||||||| | || ||||| |||||   ||||||||||||||||||||||||||||||||||||    
T  8693253 tctagaaggaagaaagataagaaaggtattctcaataatgcatcactttgttccaaacaaaaatagctg 8693321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 636 - 704
Target Start/End: Complemental strand, 10032503 - 10032435
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaa 704  Q
    |||||||| ||||||||| ||  |||||||||| ||||||||||||| || || | |||||||||||||    
T  10032503 tttttaagaaagaaattcattacatttcattaactaaaatatgtcaactacataaaggtacatcatcaa 10032435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 5e-71; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 636 - 939
Target Start/End: Complemental strand, 17322045 - 17321745
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||||||||||||||||| ||| | |||||||  |||||| ||||| ||| ||||||||||||||||||||||||||| ||||| ||||||||| | |||    
T  17322045 tttttaaggaagaaattcattgcaattcattagctaaaatgtgtcacatacatgagggtacatcatcaataatatgggggctaggattagatagggctgc 17321946  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
     ||| ||||| ||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||| || || |||||||||||||||| |||||    
T  17321945 ttgagctaactcgtgagctaccctatttgcttgcctcctgttgaactcgacatgagagttctgaaatctatccaataacaactgtttacaagcactaata 17321846  T
Q  836 ttacactcaaattcggtactatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgttgat 935  Q
     | ||  |||| ||| |||| ||||| ||  | ||| ||||||| |||||||||| |||| ||||||||||||||||| ||  |||||||||||||||||    
T  17321845 atgcatccaaactcgctactgtcatctatactagaa-ttgacacaatcaacaacttttttgcaatcaagtgcaaaatcgac--attgtcaaactgttgat 17321749  T
Q  936 taga 939  Q
    ||||    
T  17321748 taga 17321745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 629 - 825
Target Start/End: Complemental strand, 12539293 - 12539097
Alignment:
Q  629 ttatttatttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagata 728  Q
    |||||| |||||||||||||||||| ||| |||||||||  |||||||||||||||| |||  |||||||||||||||||||||| ||||| |||||| |    
T  12539293 ttatttttttttaaggaagaaattcattgcatttcattagctaaaatatgtcaaataaatgtaggtacatcatcaataatatgggggctaggattagaca 12539194  T
Q  729 gagttgcctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttaca 825  Q
      | ||| | | ||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| ||  ||||||||    
T  12539193 tggctgcatcagctaactcgtgagctatcctatttgcttgcctcctgttgaactcgacatgagagttctgaaatctatccactaacagttgtttaca 12539097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 636 - 939
Target Start/End: Original strand, 10395299 - 10395599
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    ||||||||||||||| || |||||||||||||| ||||||||| |||||| |||  |||||||||||||||| ||||| ||||| || ||| |  | |||    
T  10395299 tttttaaggaagaaaatcattgtatttcattaactaaaatatgccaaatacatgtaggtacatcatcaataacatgggggctaggatcagacatggctgc 10395398  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
     ||| ||||| ||||||||| |||||| |||||||||||| |||||   |||| ||||||||| ||| |||  |||| || |||||||||||||||  ||    
T  10395399 ttgagctaactcgtgagctaccctatttgcttgcctcctgctgaacttaacataagagttctggaatttatcaactagcagctgtttacaagcagtgcta 10395498  T
Q  836 ttacactcaaattcggtactatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgttgat 935  Q
     ||||  |||| ||| |||||||||| |   ||||| ||||||| ||||||||| ||||||||||||||  ||||||| ||  ||| |||||||||||||    
T  10395499 atacatccaaactcgctactatcatctaaacttgaa-ttgacacaatcaacaacccttttacaatcaagaacaaaatctac--attatcaaactgttgat 10395595  T
Q  936 taga 939  Q
    ||||    
T  10395596 taga 10395599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 636 - 861
Target Start/End: Complemental strand, 27877871 - 27877646
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||| ||||||| || || ||| |||||||||  |||||||||||||||| |||  ||||||||||||||||  |||  ||||| |||||| || |||||    
T  27877871 ttttgaaggaaggaaatcattgcatttcattagctaaaatatgtcaaatacatgtaggtacatcatcaataacgtggcggctaggattagacagggttgc 27877772  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
    |||| ||||| ||||||||| |||||| |||||||||||| ||||| | ||||||||||| ||||||||||  |||| || ||||||||||||||| |||    
T  27877771 ctgagctaactcgtgagctaccctatttgcttgcctcctgctgaactcaacatgagagttatgaaatctatctactagcagctgtttacaagcagtgata 27877672  T
Q  836 ttacactcaaattcggtactatcatc 861  Q
     ||||  |||| ||| ||||||||||    
T  27877671 atacatccaaactcgctactatcatc 27877646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 636 - 829
Target Start/End: Original strand, 3601159 - 3601355
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaa---taatatgggtgctagaattagatagagt 732  Q
    |||||||||||||||||| ||| ||| |||||  |||||||||||||||| |||| ||||||||||||    | |||||||  |||  ||||||||| ||    
T  3601159 tttttaaggaagaaattcattgcattccattagctaaaatatgtcaaatacatgaaggtacatcatcatctgtcatatggggactatgattagatagggt 3601258  T
Q  733 tgcctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagca 829  Q
    || || | ||||| ||||||| | |  ||||||||||||||| |||||| ||||||||||||||||||||||||| ||||  || ||||||||||||    
T  3601259 tgtctaagctaactcgtgagcaacctcattcgcttgcctcctattgaactcgacatgagagttctgaaatctattaactaataattgtttacaagca 3601355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 636 - 829
Target Start/End: Complemental strand, 2114526 - 2114333
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||||||||||||||||| ||| ||||||||| ||||||| || |||||| || | |||| |||||| |||| | ||| ||||| ||| ||||| | |||    
T  2114526 tttttaaggaagaaattcattgcatttcattagttaaaatgtgccaaatacataaaggtagatcatctataacacgggggctaggattggatagggctgc 2114427  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagca 829  Q
    || | ||||  ||||||| | || |||||||| | ||||||||||| ||||||||||||||||||||||||| ||||  || ||||||||||||    
T  2114426 ctaagctaattcgtgagcgaccccattcgcttccttcctgttgaactcgacatgagagttctgaaatctattaactaataagtgtttacaagca 2114333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 814 - 942
Target Start/End: Complemental strand, 12539089 - 12538964
Alignment:
Q  814 caactgtttacaagcagtaatattacactcaaattcggtactatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatc 913  Q
    |||||||||||||||||||||| ||||| |||||||| |||||||||| | | | | | || |||| ||||||||||||||||||||||||  |||||||    
T  12539089 caactgtttacaagcagtaataatacacccaaattcgctactatcatctaggctagca-ttaacacaatcaacaactcttttacaatcaagaacaaaatc 12538991  T
Q  914 aacatattgtcaaactgttgattagaaat 942  Q
     ||    |||||||||||||||| |||||    
T  12538990 gac--gctgtcaaactgttgattggaaat 12538964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 636 - 803
Target Start/End: Complemental strand, 40610097 - 40609930
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    ||||||||||||||| || ||  |||||||||  |||||||||||||||| |||   |||||||||||||||  |||| | ||| |||||| || | |||    
T  40610097 tttttaaggaagaaaatcattacatttcattagctaaaatatgtcaaatacatgtatgtacatcatcaataacgtgggggttaggattagacagggctgc 40609998  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatc 803  Q
    ||||  |||| ||| ||||| ||||||  |||  || ||| ||||| | |||||||||||||||||||    
T  40609997 ctgaattaactcgtaagctaccctatttacttatcttctgatgaactcaacatgagagttctgaaatc 40609930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 760 - 827
Target Start/End: Original strand, 32544406 - 32544473
Alignment:
Q  760 attcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaag 827  Q
    |||||||||||| ||||| ||| |||||||| |||||||| ||||||| ||||  |||||||||||||    
T  32544406 attcgcttgccttctgttaaactcgacatgaaagttctgatatctattaactaataactgtttacaag 32544473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 765 - 807
Target Start/End: Original strand, 44839927 - 44839969
Alignment:
Q  765 cttgcctcctgttgaacacgacatgagagttctgaaatctatt 807  Q
    |||||||||| |||||| ||||||||||||||||||| |||||    
T  44839927 cttgcctcctattgaactcgacatgagagttctgaaaactatt 44839969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 764 - 801
Target Start/End: Original strand, 2536551 - 2536588
Alignment:
Q  764 gcttgcctcctgttgaacacgacatgagagttctgaaa 801  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  2536551 gcttgcctcctattgaactcgacatgagagttctgaaa 2536588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 764 - 801
Target Start/End: Complemental strand, 6784320 - 6784283
Alignment:
Q  764 gcttgcctcctgttgaacacgacatgagagttctgaaa 801  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  6784320 gcttgcctcctattgaactcgacatgagagttctgaaa 6784283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 764 - 801
Target Start/End: Original strand, 11351666 - 11351703
Alignment:
Q  764 gcttgcctcctgttgaacacgacatgagagttctgaaa 801  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  11351666 gcttgcctcctattgaactcgacatgagagttctgaaa 11351703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 5e-65; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 636 - 910
Target Start/End: Original strand, 10346425 - 10346697
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||||||||||||||||| ||| |||||||||  |||||| ||||||||| |||||||||||||||| |||||||| | | |||||||| |||| |||||    
T  10346425 tttttaaggaagaaattcattgcatttcattagctaaaatgtgtcaaatacatgagggtacatcatctataatatgag-gatagaattatatagggttgc 10346523  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
    |||| ||||| ||||||| | ||||||||||||||||||||||||| | ||||| |||||||||||||||| ||||| ||  || ||||||| |||||||    
T  10346524 ctgagctaactcgtgagcgaccctattcgcttgcctcctgttgaactctacatgcgagttctgaaatctatccactaacatttggttacaagtagtaata 10346623  T
Q  836 ttacactcaaattcggtactatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaa 910  Q
     ||||  |||||||| |||||||||| || ||| || ||||||| |||||||||||||||||| |||||||||||    
T  10346624 atacatccaaattcgctactatcatctatattttaa-ttgacacaatcaacaactcttttacagtcaagtgcaaa 10346697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 636 - 858
Target Start/End: Original strand, 1017567 - 1017789
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||||| |||||||| |  ||| |||||||||  ||||||||| |||||| |||  |||||||||||||| | ||||| ||||| ||||||||| | ||     
T  1017567 tttttagggaagaaaattattgcatttcattagataaaatatgccaaatacatgtaggtacatcatcaatcacatgggggctaggattagatagggctgt 1017666  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
    |||| ||||| ||||||||| |||||| |||||||||| ||||||| | ||||||||||||||||||||||  |||| ||  ||||||||||||||||||    
T  1017667 ctgagctaactcgtgagctaccctatttgcttgcctccggttgaactcaacatgagagttctgaaatctatcaactagcatatgtttacaagcagtaata 1017766  T
Q  836 ttacactcaaattcggtactatc 858  Q
     ||||  |||| ||| |||||||    
T  1017767 atacatccaaactcgctactatc 1017789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 636 - 939
Target Start/End: Original strand, 26730812 - 26731112
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||||| |||||||| || ||| |||||||||  ||||||||| |||||| |||  |||| ||||||||| | ||||| ||||| ||||||||| | |||    
T  26730812 tttttagggaagaaaatcattgcatttcattagataaaatatgccaaatacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgc 26730911  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
    |||| ||||| |||| |||| |||||| |||||||||| | ||||| | ||||||||||||||||||||||  ||||  | ||||||||||| ||| |||    
T  26730912 ctgagctaactcgtgtgctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctatcaactagtagctgtttacaagtagtgata 26731011  T
Q  836 ttacactcaaattcggtactatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgttgat 935  Q
     ||||  |||| ||| ||||||| || |   | ||| ||||||| |||||||||  |||||||||||||  ||||||| ||  ||| |||||||||||||    
T  26731012 atacatccaaactcgctactatcttctagactagaa-ttgacacaatcaacaacctttttacaatcaagaacaaaatctac--attatcaaactgttgat 26731108  T
Q  936 taga 939  Q
    ||||    
T  26731109 taga 26731112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 659 - 939
Target Start/End: Original strand, 47703699 - 47703976
Alignment:
Q  659 atttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgcctgatctaacccgtgagctatcc 758  Q
    |||||||||  ||||||||| |||||| |||  |||| ||||||||| | ||||| ||||| |||| |||| | ||||||| ||||| ||||||||| ||    
T  47703699 atttcattagataaaatatgccaaatacatgtaggtatatcatcaatcacatgggggctaggattatatagggctgcctgagctaactcgtgagctaccc 47703798  T
Q  759 tattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaatattacactcaaattcggtactatc 858  Q
    |||| |||||||||| |   ||| | ||||||||||||||||||||||  |||| || |||||||||||| || ||| ||||  |||| ||| |||||||    
T  47703799 tatttgcttgcctccggcataactcaacatgagagttctgaaatctatcaactagcagctgtttacaagcggtgataatacatccaaactcgctactatc 47703898  T
Q  859 atcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgttgattaga 939  Q
     || |   | ||| ||||||| |||||||||  |||||||||||||  ||||||| ||  ||| ||||| |||||||||||    
T  47703899 ttctagactagaa-ttgacacaatcaacaacctttttacaatcaagaacaaaatctac--attatcaaattgttgattaga 47703976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 636 - 905
Target Start/End: Original strand, 4525378 - 4525642
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||| |||||| |||||| ||| |||||||||  ||||||||| |||||| |||   ||||||||| ||||||| ||  ||||| |||||| || ||||     
T  4525378 ttttgaaggaataaattcattgcatttcattagctaaaatatgccaaatacatgtacgtacatcattaataatacgga-gctaggattagacagggttgt 4525476  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
    || | ||||| ||||| |||      | ||||||||| || ||||| | |||||||||||||||||| |||  |||| || ||||||||||||| |||||    
T  4525477 ctcaactaactcgtgatctac-----ttgcttgcctcttgctgaactcaacatgagagttctgaaatttatctactaacagctgtttacaagcaataata 4525571  T
Q  836 ttacactcaaattcggtactatcatc-aatgtttgaatttgacaccatcaacaactcttttacaatcaagt 905  Q
     ||||| |||||||  |||||||||| ||  | |    ||||||| |||||||||| ||||||||||||||    
T  4525572 atacacccaaattcaatactatcatctaaactatactattgacacaatcaacaacttttttacaatcaagt 4525642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 661 - 781
Target Start/End: Complemental strand, 20223296 - 20223177
Alignment:
Q  661 ttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgcctgatctaacccgtgagctatccta 760  Q
    |||||||| ||||||||| |||||| |||  |||||||||||||||| ||||| | ||| |||||| || | | ||| | ||||| ||||||||||||||    
T  20223296 ttcattaactaaaatatgccaaatacatgtaggtacatcatcaataacatggg-gttaggattagacagggctaccttagctaactcgtgagctatccta 20223198  T
Q  761 ttcgcttgcctcctgttgaac 781  Q
    || |||||||| ||| |||||    
T  20223197 tttgcttgccttctgctgaac 20223177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 764 - 801
Target Start/End: Complemental strand, 8705754 - 8705717
Alignment:
Q  764 gcttgcctcctgttgaacacgacatgagagttctgaaa 801  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  8705754 gcttgcctcctattgaactcgacatgagagttctgaaa 8705717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 764 - 801
Target Start/End: Complemental strand, 9057641 - 9057604
Alignment:
Q  764 gcttgcctcctgttgaacacgacatgagagttctgaaa 801  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  9057641 gcttgcctcctattgaactcgacatgagagttctgaaa 9057604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 764 - 801
Target Start/End: Complemental strand, 36684947 - 36684910
Alignment:
Q  764 gcttgcctcctgttgaacacgacatgagagttctgaaa 801  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  36684947 gcttgcctcctattgaactcgacatgagagttctgaaa 36684910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 4e-59; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 636 - 939
Target Start/End: Complemental strand, 9451630 - 9451330
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||||||||||||||||  ||| |||||||||  |||||||||||||||| |||  |||||||||||||||||||||| ||||| |||||| || | |||    
T  9451630 tttttaaggaagaaattaattgcatttcattaggtaaaatatgtcaaatacatgtaggtacatcatcaataatatgggggctaggattagacagggctgc 9451531  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
    ||||| |||| ||||||||| |||||| | ||| |||||||||||| ||| ||||||||||||||||||||  || | |   ||||||||||||||||||    
T  9451530 ctgatttaactcgtgagctaccctatttgtttgtctcctgttgaactcgatatgagagttctgaaatctatctaccagccgttgtttacaagcagtaata 9451431  T
Q  836 ttacactcaaattcggtactatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgttgat 935  Q
     ||||| |||||||  | |||||||| | | | ||| ||||||| ||||||||||||||||||||||||  ||||||| ||  |||||||||| ||||||    
T  9451430 atacacccaaattcacttctatcatctaagctagaa-ttgacacaatcaacaactcttttacaatcaagaacaaaatcgac--attgtcaaacggttgat 9451334  T
Q  936 taga 939  Q
    ||||    
T  9451333 taga 9451330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 636 - 840
Target Start/End: Complemental strand, 17852514 - 17852310
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||||| |||||||| || ||| |||||||||  ||||||||| |||||| |||  |||||||||||||| | ||||| ||||  ||||||||| | |||    
T  17852514 tttttagggaagaaaatcattgcatttcattagataaaatatgccaaatacatgtaggtacatcatcaatcacatgggggctaagattagatagggctgc 17852415  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
    |||| ||||| ||||||||| |||||| |||||||||| | ||||| | |||||||| |||||||||||||  |||| || ||||||||||||||| |||    
T  17852414 ctgagctaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagaattctgaaatctatcaactagcagctgtttacaagcagtgata 17852315  T
Q  836 ttaca 840  Q
     ||||    
T  17852314 ataca 17852310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 636 - 826
Target Start/End: Complemental strand, 20492653 - 20492460
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaa---taatatgggtgctagaattagatagagt 732  Q
    |||||| ||||||||||  ||| ||||||||| ||||||| |||||||||  ||| |||| ||||||||   ||||||||| | ||||||| ||||| |     
T  20492653 tttttagggaagaaatttattgcatttcattagttaaaatgtgtcaaatacgtgaaggtatatcatcaactataatatgggggttagaattggatagggc 20492554  T
Q  733 tgcctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaa 826  Q
    ||||||| ||||  ||||||| | |||||||||||||||||| || ||| ||| ||||||||||| ||||||||| ||||  ||| ||||||||    
T  20492553 tgcctgagctaattcgtgagcgaccctattcgcttgcctcctattaaactcgagatgagagttctaaaatctattaactaataaccgtttacaa 20492460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 643 - 858
Target Start/End: Complemental strand, 12129654 - 12129439
Alignment:
Q  643 ggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgcctgatct 742  Q
    |||||||| || ||| |||||||||  |||||||||||||||| |||  |||||||||||||| | ||||| ||||| || |||||  | | ||||| ||    
T  12129654 ggaagaaaatcattgcatttcattagataaaatatgtcaaatacatgtaggtacatcatcaatcacatgggggctaggatcagataaggctacctgagct 12129555  T
Q  743 aacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaatattacact 842  Q
    ||| ||||||||| |||||| |||||||| | | ||||| | || ||| |||| ||||||||||  |||| ||  |||||||||||||| ||| ||||      
T  12129554 aactcgtgagctaccctatttgcttgccttcggctgaactcaacgtgaaagttttgaaatctatcaactagcagttgtttacaagcagtgataatacatc 12129455  T
Q  843 caaattcggtactatc 858  Q
    |||| ||| |||||||    
T  12129454 caaactcgctactatc 12129439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 636 - 918
Target Start/End: Complemental strand, 36677787 - 36677506
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||||||||||||||||  ||| |||||||||  |||||| ||||||||| ||||||| |||||||| |||| ||| | ||||| |||| |||| | |      
T  36677787 tttttaaggaagaaatttattgcatttcattagctaaaatgtgtcaaatacatgagggaacatcatctataacatgcgagctaggattaaatagggctat 36677688  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
     ||| |||||  |||||  | |||||||| | |||| ||||||||| ||||||||||||  ||||| ||||| |||| ||| ||| |||| |||   ||     
T  36677687 atgagctaacttgtgagtgaccctattcgttcgccttctgttgaactcgacatgagagtgttgaaaactattaactaacaattgtctacatgcatatatg 36677588  T
Q  836 ttacactcaaattcggtactatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacat 918  Q
     ||||  |||| ||| |||||||||  ||  |||||||| |||  ||||| |||||||||| ||||||| | |||||| ||||    
T  36677587 atacaaccaaactcgctactatcatttatagttgaattt-acatgatcaataactcttttagaatcaagagaaaaatccacat 36677506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 747 - 807
Target Start/End: Complemental strand, 12980789 - 12980729
Alignment:
Q  747 cgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctatt 807  Q
    ||||||| | || ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  12980789 cgtgagcgaccccattcgtttgcctcctgttgaactcgacatgagagttctgaaatctatt 12980729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 636 - 712
Target Start/End: Original strand, 20528964 - 20529040
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgg 712  Q
    |||||||| |||||| |||||||||||||||| |||||||||   ||||| |||| ||||||||||| |||| ||||    
T  20528964 tttttaagaaagaaagtcgttgtatttcattagttaaaatattctaaatacatgaaggtacatcatctataacatgg 20529040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 636 - 795
Target Start/End: Original strand, 10325008 - 10325166
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    ||||||| ||||||| || |||||||||||||  |||||| |||| |||| | |||||||||||||| |||| |||||  |||| |||| || | ||||     
T  10325008 tttttaaagaagaaactcattgtatttcattagctaaaatgtgtctaatacacgagggtacatcatctataacatgggatctaggattaaatggggttg- 10325106  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagtt 795  Q
     ||| ||||| | ||||| | |  ||||| ||||||||| || ||| |||||||||||||    
T  10325107 ttgagctaactcatgagcgacctcattcgtttgcctcctattaaactcgacatgagagtt 10325166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 628 - 699
Target Start/End: Complemental strand, 12980884 - 12980813
Alignment:
Q  628 attatttatttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatc 699  Q
    ||||||||| |||||| ||| ||||  ||||||||||||| ||||||| ||||||||| |||||| ||||||    
T  12980884 attatttatatttaagaaaggaatttattgtatttcattagttaaaatgtgtcaaatacatgaggatacatc 12980813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 764 - 829
Target Start/End: Complemental strand, 21118437 - 21118372
Alignment:
Q  764 gcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagca 829  Q
    ||||||||||| |||||| ||||||||||||||||||| |||||  | | ||||||| ||||||||    
T  21118437 gcttgcctcctattgaactcgacatgagagttctgaaaactattgtcaaacaactgtctacaagca 21118372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 5e-40; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 636 - 939
Target Start/End: Original strand, 41315806 - 41316106
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||||| ||||| || || ||| |||||||||  ||||||||| ||||||||||  |||| ||||||||| | ||||| ||||| ||||||||| |||||    
T  41315806 tttttagggaaggaaatcattgcatttcattagataaaatatgccaaatatatgtaggtatatcatcaatcacatgggggctagtattagatagggttgc 41315905  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
    ||||  |||| ||||||||| |||||| |||||||||| | ||||| | ||||||||||||||||||||||  |||| || ||||||||||| ||| |||    
T  41315906 ctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctatcaactagcagctgtttacaagtagtgata 41316005  T
Q  836 ttacactcaaattcggtactatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgttgat 935  Q
     ||||  |||| ||| ||||||| || |   | ||| ||||||| |||||||||  |||||||||||||  ||||||| ||  ||| ||||| |||||||    
T  41316006 atacatccaaactcgctactatcttctagactagaa-ttgacacaatcaacaacctttttacaatcaagaacaaaatctac--attatcaaattgttgat 41316102  T
Q  936 taga 939  Q
    ||||    
T  41316103 taga 41316106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 659 - 939
Target Start/End: Original strand, 28589916 - 28590193
Alignment:
Q  659 atttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgcctgatctaacccgtgagctatcc 758  Q
    |||||||||  ||||||||| |||||| ||   |||| ||||||||| | ||||| ||||| ||||||||| | ||||||| ||||| ||||||||| ||    
T  28589916 atttcattagataaaatatgccaaatacatttaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagctaactcgtgagctaccc 28590015  T
Q  759 tattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaatattacactcaaattcggtactatc 858  Q
    |||| |||||||||| | ||||| | ||||||||||||||||||||||  |||| || ||||||||||||||| ||| ||||  |||| ||| |||||||    
T  28590016 tatttgcttgcctccggctgaactcaacatgagagttctgaaatctatcaactagcagctgtttacaagcagtgataatacatccaaactcgctactatc 28590115  T
Q  859 atcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgttgattaga 939  Q
     || |   | ||| ||||||| |||||||||| |||||||||||||  ||||||| ||  ||| ||||| |||||||||||    
T  28590116 ttctagactagaa-ttgacacaatcaacaacttttttacaatcaagaacaaaatctac--attatcaaattgttgattaga 28590193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 655 - 952
Target Start/End: Complemental strand, 10977908 - 10977614
Alignment:
Q  655 ttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgcctgatctaacccgtgagct 754  Q
    |||||||||||||  |||||||||||||||| |||  |||| ||||||||||||||||| ||||| |||||| || | | ||||| ||| | | || |||    
T  10977908 ttgtatttcattagctaaaatatgtcaaatacatgtaggtatatcatcaataatatgggggctaggattagacagggctacctgagctagctcatgggct 10977809  T
Q  755 atcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaatattacactcaaattcggtac 854  Q
    | ||||||  |||||||| |||||||| | |||||||||||||| ||||||||| ||| ||  ||||||||||||| |||| ||||  |||| ||  | |    
T  10977808 accctatttacttgcctcatgttgaactcaacatgagagttctggaatctattctctagcagttgtttacaagcagcaataatacatccaaaatcactgc 10977709  T
Q  855 tatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgttgattagaaatggaatccaag 952  Q
    ||||||| |   | ||| ||||||| |||||||| | |||||||||||||| ||||||| ||  ||| ||||| ||||||||||| ||  ||||||||    
T  10977708 tatcatctaaactagaa-ttgacacaatcaacaattattttacaatcaagtacaaaatcgac--attatcaaattgttgattagagatccaatccaag 10977614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 766 - 807
Target Start/End: Complemental strand, 6860542 - 6860501
Alignment:
Q  766 ttgcctcctgttgaacacgacatgagagttctgaaatctatt 807  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  6860542 ttgcctcctgttgaactcgacatgagagttttgaaatctatt 6860501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 764 - 801
Target Start/End: Original strand, 29894390 - 29894427
Alignment:
Q  764 gcttgcctcctgttgaacacgacatgagagttctgaaa 801  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  29894390 gcttgcctcctattgaactcgacatgagagttctgaaa 29894427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 80; Significance: 5e-37; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 636 - 863
Target Start/End: Original strand, 21292 - 21518
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    ||||||| |||||||||| ||| |||||||||  |||||| ||||||||| ||| |||||||||||||||| |||||| ||||| ||||||||| | | |    
T  21292 tttttaatgaagaaattcattgcatttcattagctaaaatgtgtcaaatacatgtgggtacatcatcaatagtatgggggctaggattagatagggctac 21391  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
     ||| |||||   ||||||| ||||||  ||||||||||||||||| |||||||||| ||||||||||||| || || ||||||||| ||||||  |||     
T  21392 ttgagctaacttatgagctaccctatttccttgcctcctgttgaactcgacatgaga-ttctgaaatctatccattaacaactgtttgcaagcaaaaatg 21490  T
Q  836 ttacactcaaattcggtactatcatcaa 863  Q
     ||||  |||||||| |||||| |||||    
T  21491 atacatccaaattcgctactattatcaa 21518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 659 - 858
Target Start/End: Original strand, 255330 - 255529
Alignment:
Q  659 atttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgcctgatctaacccgtgagctatcc 758  Q
    |||||||||  |||| |||| |||||| |||  |||| ||||||||| ||||||| ||||| ||||||||| | ||||||| ||||||||||||||| ||    
T  255330 atttcattagataaagtatgccaaatacatgtaggtatatcatcaatcatatgggggctaggattagatagggctgcctgagctaacccgtgagctaccc 255429  T
Q  759 tattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaatattacactcaaattcggtactatc 858  Q
    |||| |||||||||| | ||||| | |||||||| |||||||||||||  |||| || ||||||||||||||| ||| ||||  |||| ||| |||||||    
T  255430 tatttgcttgcctccggctgaactcaacatgagaattctgaaatctatcaactagcagctgtttacaagcagtgataatacatccaaactcgctactatc 255529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 8e-33; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 636 - 840
Target Start/End: Original strand, 26951381 - 26951585
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||||| ||||| || || ||| |||||||||  ||||||||| |||||| |||  |||| ||||||||| | ||||| ||||| ||||||||| | |||    
T  26951381 tttttagggaaggaaatcattgcatttcattagataaaatatgccaaatacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgc 26951480  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
    |||| ||||| ||||||||| |||||| |||||||||| | ||||| | ||||||||||||||||||||||  |||| ||  |||||||||||||| |||    
T  26951481 ctgagctaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctatcaactagcagttgtttacaagcagtgata 26951580  T
Q  836 ttaca 840  Q
     ||||    
T  26951581 ataca 26951585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 749 - 939
Target Start/End: Original strand, 21276442 - 21276629
Alignment:
Q  749 tgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaatattacactcaaatt 848  Q
    |||||||||||||| ||||||||| || ||||| | ||||||||||| ||||||||||  |||| || ||||||||||||||| ||| ||||  |||| |    
T  21276442 tgagctatcctatttgcttgcctcttgctgaactcaacatgagagttttgaaatctatctactaacagctgtttacaagcagtgataatacatccaaact 21276541  T
Q  849 cggtactatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgttgattaga 939  Q
    || |||||||||| |   | ||| ||||||| ||||||||| ||||||||||||||  ||||||| ||  ||| ||||| |||||||||||    
T  21276542 cgctactatcatctaaactagaa-ttgacacaatcaacaacccttttacaatcaagaacaaaatctac--attatcaaaatgttgattaga 21276629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 636 - 952
Target Start/End: Complemental strand, 33324875 - 33324566
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    ||||| |||||||| ||| ||| |||| ||||| |||||||||||||||| ||   |||||||||||||||||||||| | ||| |||||| || | | |    
T  33324875 ttttttaggaagaatttcattgcattttattaactaaaatatgtcaaatacatataggtacatcatcaataatatggg-gttaggattagacagggctac 33324777  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
    |||| |||   |||| |||| |||||| || ||||||||||||||| |   || |||||| || ||||||| | ||  ||||||||||||||||| ||||    
T  33324776 ctgaactagttcgtgggcta-cctatttgcgtgcctcctgttgaactc--aataagagttttggaatctatcctcttgcaactgtttacaagcagcaata 33324680  T
Q  836 ttacactcaaattcggtactatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgttgat 935  Q
     |||| ||||||||  |  ||||||| |    | || ||||||| || ||||||| |||||||||||||| ||||||| ||  ||| ||||| |||||||    
T  33324679 atacattcaaattcattgttatcatcta-aactaaaattgacacaattaacaacttttttacaatcaagtacaaaatcgac--attatcaaattgttgat 33324583  T
Q  936 tagaaatggaatccaag 952  Q
    |||| ||  ||||||||    
T  33324582 tagagatccaatccaag 33324566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 631 - 830
Target Start/End: Original strand, 9808652 - 9808851
Alignment:
Q  631 atttatttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagataga 730  Q
    |||| |||||| ||||||||||  ||| |||||||||  |||| | || |||||| |||| || |||||||| |||||||||| | ||| ||| ||||||    
T  9808652 atttttttttatggaagaaatttattgcatttcattagctaaagtgtgacaaatacatgaaggaacatcatctataatatgggggttaggattggataga 9808751  T
Q  731 gttgcctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcag 830  Q
    | || |||| ||||| ||||||| |  | ||||  ||||||   ||||||| || |||||||||| ||||||||||| ||||  |  |||||||||||||    
T  9808752 gctgtctgagctaactcgtgagcgactccattcatttgccttaagttgaactcggcatgagagttttgaaatctattaactaatatatgtttacaagcag 9808851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 873 - 939
Target Start/End: Complemental strand, 23556668 - 23556604
Alignment:
Q  873 ttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgttgattaga 939  Q
    ||||||| ||||||||||||||||||||||| | ||||||| ||  ||||||||||| |||| ||||    
T  23556668 ttgacacaatcaacaactcttttacaatcaaatacaaaatcgac--attgtcaaactattgaataga 23556604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 764 - 829
Target Start/End: Complemental strand, 26440848 - 26440783
Alignment:
Q  764 gcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagca 829  Q
    ||||||||||| |||||| ||||||||||||||| ||| |||||  | | ||||||| ||||||||    
T  26440848 gcttgcctcctattgaactcgacatgagagttctaaaaactattgtcaaacaactgtctacaagca 26440783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 8e-33; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 636 - 939
Target Start/End: Complemental strand, 16889311 - 16889012
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||||| |||||||| || ||| ||||| |||  ||||||||| |||||| |||  |||||||||||||| | ||||| ||||| ||||||||| | |||    
T  16889311 tttttagggaagaaaatcattgcatttcgttagataaaatatgccaaatacatgtaggtacatcatcaatcacatgggagctaggattagatagggctgc 16889212  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
     ||| ||||| ||||||||| |||||| ||||||||||   ||||| | ||||||||||||||||||||||  |||| |  |||||||||| |||| |||    
T  16889211 -tgagctaactcgtgagctaccctatttgcttgcctccgactgaactcaacatgagagttctgaaatctatcaactagcggctgtttacaaacagtgata 16889113  T
Q  836 ttacactcaaattcggtactatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgttgat 935  Q
     ||||  |||| ||| ||||||| || |  || ||| ||||||| |||||||||  |||||||||||||  ||||||| ||  ||| ||||| |||||||    
T  16889112 atacatccaaactcgctactatcttctagattagaa-ttgacacaatcaacaacctttttacaatcaagaacaaaatctac--attatcaaattgttgat 16889016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 636 - 828
Target Start/End: Complemental strand, 35097078 - 35096886
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||||||| | ||||||| ||| |||||||||  |||||| || |||||| |||| ||||||||||| |||||| |   ||||| ||||||||| ||||     
T  35097078 tttttaagaaggaaattcattgcatttcattagctaaaatgtgccaaatacatgaaggtacatcatctataatacgatggctaggattagatagggttgt 35096979  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagc 828  Q
    |||| ||||| ||||||| | |||||| |||||||| || |||||| |||||||||||||||||||||||| ||||| ||  |||||||||||    
T  35096978 ctgagctaactcgtgagcaaccctatttgcttgccttctattgaactcgacatgagagttctgaaatctatccactaacatttgtttacaagc 35096886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 673 - 939
Target Start/End: Original strand, 23059319 - 23059582
Alignment:
Q  673 aatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgcctgatctaacccgtgagctatcctattcgcttgcctc 772  Q
    |||||| |||||| |||  | |||||||||||| | ||||| ||||| |||||||||   ||||||| ||||| ||||||||| |||||| |||||||||    
T  23059319 aatatgccaaatacatgtagatacatcatcaatcacatgggggctaggattagataggactgcctgagctaactcgtgagctaccctatttgcttgcctc 23059418  T
Q  773 ctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaatattacactcaaattcggtactatcatcaatgtttgaat 872  Q
    | | ||||| | ||||||||||||||||||||||  |||| || ||||||||||| ||| ||| ||||  |||| ||| ||||||| || |   | |||     
T  23059419 cggctgaactcaacatgagagttctgaaatctatcaactagcagctgtttacaagtagtgataatacatccaaactcgctactatcttctagactagaa- 23059517  T
Q  873 ttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgttgattaga 939  Q
    ||||||| |||||||||  |||||||||||||  ||||||| ||  ||| ||||| |||||||||||    
T  23059518 ttgacacaatcaacaacctttttacaatcaagaacaaaatctac--attatcaaattgttgattaga 23059582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 636 - 834
Target Start/End: Original strand, 37856911 - 37857109
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    ||||||||||| |||||| ||| |||||||||  |||||||| ||||||| |||  |||| ||||||||||||||||| | | | |||||  ||    ||    
T  37856911 tttttaaggaataaattcattgcatttcattaggtaaaatatttcaaatacatgtaggtatatcatcaataatatgggggttgggattaggcaggaccgc 37857010  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaat 834  Q
    |||| ||||| |||||||||  ||||| |||||||||||||||||| | |||||||||||||||||||||| | ||| ||  |||||||||||| ||||    
T  37857011 ctgagctaactcgtgagctactctatttgcttgcctcctgttgaactcaacatgagagttctgaaatctatcctctagcagttgtttacaagcaataat 37857109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 636 - 805
Target Start/End: Original strand, 49407016 - 49407185
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||  | |||||||| ||||| || | ||||| ||| ||    |||||    
T  49407016 tttttaaggaagaaattcgttgcatttcattagttaaaatgtgtcaaatatatgaaagaacatcatctataatgtgagagctaggatttgacgtggttgc 49407115  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatcta 805  Q
    || | ||||| ||||||| | ||||||  ||||| |||| ||||||  ||||| |||||| |||||||||    
T  49407116 ctaaactaactcgtgagcgaccctatttacttgcttcctattgaacttgacataagagttatgaaatcta 49407185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 680 - 812
Target Start/End: Complemental strand, 9633184 - 9633052
Alignment:
Q  680 caaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgcctgatctaacccgtgagctatcctattcgcttgcctcctgttga 779  Q
    |||||| |||| |||||  |||| |||||||||| ||||| ||| |||||  ||| |||| ||||| ||| | | | || |||| |||||||||| ||||    
T  9633184 caaatacatgaaggtacgccatctataatatgggggctagtattggataggattgtctgagctaactcgtaatcgaccccattcacttgcctcctattga 9633085  T
Q  780 acacgacatgagagttctgaaatctattcacta 812  Q
    || ||||||||||||||||||||||||| ||||    
T  9633084 actcgacatgagagttctgaaatctattaacta 9633052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 657 - 829
Target Start/End: Original strand, 17283484 - 17283655
Alignment:
Q  657 gtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgcctgatctaacccgtgagctat 756  Q
    |||||||| ||  |||||| || |||||| |||| ||||||||||| |||| ||||| ||||  ||| ||||||||||  |||  |||| ||||||  |     
T  17283484 gtatttcaatagctaaaatgtgacaaatacatgaaggtacatcatctataacatggg-gctatgattggatagagttgtttgagttaactcgtgagtcac 17283582  T
Q  757 cctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagca 829  Q
    || ||||| ||||||||| |||||| |||||| |||||||||||||||||| ||||  |  ||||||||||||    
T  17283583 cccattcgtttgcctcctattgaactcgacataagagttctgaaatctattgactaatagttgtttacaagca 17283655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 644 - 807
Target Start/End: Original strand, 1479180 - 1479343
Alignment:
Q  644 gaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgcctgatcta 743  Q
    |||||||||| ||| ||||||||  ||||||| || ||||||||||| ||  ||||||| |||||||| | ||||| |||  || | | || | || |||    
T  1479180 gaagaaattcattgcatttcattggttaaaatgtgccaaatatatgaaggagcatcatctataatatgtgagctaggatttaatggggctgtccgagcta 1479279  T
Q  744 acccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctatt 807  Q
    ||  |||||  | || |||  |||||||||| |||||| ||| |||||||||||||||||||||    
T  1479280 acttgtgagtgaccccatttacttgcctcctattgaactcgatatgagagttctgaaatctatt 1479343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 764 - 807
Target Start/End: Complemental strand, 1394167 - 1394124
Alignment:
Q  764 gcttgcctcctgttgaacacgacatgagagttctgaaatctatt 807  Q
    ||||||||||| |||||| ||||||||||||||||||| |||||    
T  1394167 gcttgcctcctattgaactcgacatgagagttctgaaaactatt 1394124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 636 - 685
Target Start/End: Original strand, 5124521 - 5124570
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaata 685  Q
    |||||||||||| || || ||||||||||||| ||||||| |||||||||    
T  5124521 tttttaaggaagcaaatcattgtatttcattagttaaaatgtgtcaaata 5124570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 764 - 801
Target Start/End: Original strand, 19315959 - 19315996
Alignment:
Q  764 gcttgcctcctgttgaacacgacatgagagttctgaaa 801  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  19315959 gcttgcctcctattgaactcgacatgagagttctgaaa 19315996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 1e-31; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 636 - 941
Target Start/End: Complemental strand, 32900073 - 32899771
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||| ||||||| || || ||| |||||||||  |||||||||||||||| ||   ||| ||||||||||||| |||| ||||  |||||| || | |||    
T  32900073 ttttgaaggaaggaaatcattgcatttcattagctaaaatatgtcaaatacatataggtgcatcatcaataatgtgggggctatgattagacagggctgc 32899974  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
     ||| ||||| ||||| ||| |||||| | ||| |||||| ||||| | ||||||||||||||||||||||  |||| |||||||||||||||||| |||    
T  32899973 atgagctaactcgtgaactaccctatttgattgtctcctggtgaactcaacatgagagttctgaaatctatctactagcaactgtttacaagcagtgata 32899874  T
Q  836 ttacactcaaattcggtactatcatcaatgtttgaatttgacaccatcaacaactcttttacaatcaagtgcaaaatcaacatattgtcaaactgttgat 935  Q
     ||||  |||| | | |||||||||| |   | | | ||||| | ||||||||  ||||||||||||||  ||||||| ||  ||| |||||||||||||    
T  32899873 atacatccaaacttgctactatcatctaaactag-agttgacgcaatcaacaatccttttacaatcaagaacaaaatctac--attatcaaactgttgat 32899777  T
Q  936 tagaaa 941  Q
    ||||||    
T  32899776 tagaaa 32899771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 636 - 840
Target Start/End: Complemental strand, 11657804 - 11657601
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    |||||| |||||||| || ||| |||||||||  ||||||||| ||||||||||  |||||||||||||| | ||| | ||||| ||||||||| | | |    
T  11657804 tttttagggaagaaaatcattgcatttcattagctaaaatatgccaaatatatgtaggtacatcatcaatcacatgagggctaggattagatagggctac 11657705  T
Q  736 ctgatctaacccgtgagctatcctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaata 835  Q
    || | ||||| ||||||||| |||||| |||||||||| | ||||| | ||||||||||||||||||||||  |||| || |||||| |||||||| |||    
T  11657704 ctaagctaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctatcaactagcagctgttt-caagcagtgata 11657606  T
Q  836 ttaca 840  Q
     ||||    
T  11657605 ataca 11657601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 636 - 861
Target Start/End: Original strand, 13104311 - 13104536
Alignment:
Q  636 tttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacatcatcaataatatgggtgctagaattagatagagttgc 735  Q
    ||||||||| ||||| || ||| ||||||||| ||||| |||| |||||| ||   |||||||| ||||||||||||| ||||  |||||| || | ||     
T  13104311 tttttaaggtagaaaatcattgcatttcattagttaaa-tatgccaaatacatataggtacatcgtcaataatatgggggctaagattagacagggctgt 13104409  T
Q  736 ctgatctaacccgtgagctatcctattcgctt-gcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaat 834  Q
    |||| ||||| ||||||||| |||| | |||| ||||| |||||||| | ||||||||||||||||||||||  |||| || ||||||||||||||| ||    
T  13104410 ctgagctaactcgtgagctaccctacttgctttgcctcttgttgaactcaacatgagagttctgaaatctatctactaccagctgtttacaagcagtgat 13104509  T
Q  835 attacactcaaattcggtactatcatc 861  Q
    | ||||  |||| ||| ||||||||||    
T  13104510 aatacatccaaactcgctactatcatc 13104536  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 659 - 850
Target Start/End: Original strand, 27862053 - 27862235
Alignment:
Q  659 atttcattaattaaaatatgtcaaatatatgagggtacatcatcaataa--tatgggtgctagaattagatagagttgcctgatctaacccgtgagctat 756  Q
    |||||||||  |||||||||||||||| |||  ||||||||||||||||  |||||| ||||| |||||| || | |||||           |||||||     
T  27862053 atttcattagctaaaatatgtcaaatacatgtaggtacatcatcaataaaatatgggggctaggattagacagggctgcct-----------tgagctac 27862141  T
Q  757 cctattcgcttgcctcctgttgaacacgacatgagagttctgaaatctattcactatcaactgtttacaagcagtaatattacactcaaattcg 850  Q
    ||||||   |||||||||||||||| | |||||||||||||||||||||| | ||| || || |||||||||||||||| |||||  |||||||    
T  27862142 cctatttatttgcctcctgttgaactcaacatgagagttctgaaatctatcctctagcagctatttacaagcagtaataatacacctaaattcg 27862235  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 634 - 698
Target Start/End: Complemental strand, 29021974 - 29021910
Alignment:
Q  634 tatttttaaggaagaaattcgttgtatttcattaattaaaatatgtcaaatatatgagggtacat 698  Q
    |||||| ||||||||||||| ||| |||| ||||  ||||||||||||||||||||  |||||||    
T  29021974 tattttaaaggaagaaattcattgcatttaattagctaaaatatgtcaaatatatgtaggtacat 29021910  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 764 - 801
Target Start/End: Complemental strand, 4513114 - 4513077
Alignment:
Q  764 gcttgcctcctgttgaacacgacatgagagttctgaaa 801  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  4513114 gcttgcctcctattgaactcgacatgagagttctgaaa 4513077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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