View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5109-Insertion-3 (Length: 225)
Name: NF5109-Insertion-3
Description: NF5109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5109-Insertion-3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 39641830 - 39642049
Alignment:
| Q |
6 |
caacaccacttctctttctcatttccctcaatgtcttgaatatatcttcagacgctaaagccaaatgctgaaacccggcaccttcattgtgctccaaata |
105 |
Q |
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| T |
39641830 |
caacaccacttctctttctcatttccctcaatgtcttgaatatatcttcagacgctaaagccaaatgctgaaacccggcaccttcattgtgctccaaata |
39641929 |
T |
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| Q |
106 |
cgtttctatcgtactcttgcgctttgttccgtaaacaggttcgcacaacgaaagcaacaccgtttcatcattgttcgccagtgctactgcgttcaatcca |
205 |
Q |
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| T |
39641930 |
cgtttctatcgtactcttgcgctttgttccgtaaacaggttcgcacaacggaagcaacaccgtttcatcattgttcgccagtgctactgcgttcaatcca |
39642029 |
T |
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| Q |
206 |
ctctcaacatcttcagctgt |
225 |
Q |
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| T |
39642030 |
ctctcaacatcttcagctgt |
39642049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 39680424 - 39680242
Alignment:
| Q |
1 |
cccaacaacaccacttctctttctcatttccctcaatgtcttgaatatatcttcagacgctaaagccaaatgctgaaacccggcaccttcattgtgctcc |
100 |
Q |
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| T |
39680424 |
cccaccaacaccacttctctttctcatttccctcagtgtcctaaatatatccgctgacatcaacgccaaatgctgtaacccagcaccttcattgtgttcc |
39680325 |
T |
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| Q |
101 |
aaatacgtttctatcgtactcttgcgctttgttccgtaaacaggttcgcacaacgaaagcaacaccgtttcatcattgttcgc |
183 |
Q |
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| T |
39680324 |
aaatacgtttctatttgactctttctctttgttccgtaaacaggttcattcatcggaagcaaaaccgtttcttcattattcgc |
39680242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 121
Target Start/End: Original strand, 39637201 - 39637316
Alignment:
| Q |
6 |
caacaccacttctctttctcatttccctcaatgtcttgaatatatcttcagacgctaaagccaaatgctgaaacccggcaccttcattgtgctccaaata |
105 |
Q |
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| T |
39637201 |
caacaccacttttctttctcatttctctcaatgtcttgaatatatcctccgacatcaacgccacatgttgtaaccctgcaccttcgctgtgttccaaata |
39637300 |
T |
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| Q |
106 |
cgtttctatcgtactc |
121 |
Q |
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| T |
39637301 |
agtttctatcggactc |
39637316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 6 - 211
Target Start/End: Original strand, 7055692 - 7055897
Alignment:
| Q |
6 |
caacaccacttctctttctcatttccctcaatgtcttgaatatatcttcagacgctaaagccaaatgctgaaacccggcaccttcattgtgctccaaata |
105 |
Q |
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| T |
7055692 |
caacaccacttttcttcctcatttctcttaatgtcctgaatatatcttcagacgccaaagccaaatgctgaaacccggcaccttcattgtgttccaaata |
7055791 |
T |
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| Q |
106 |
cgtttctatcgtactcttgcgctttgttccgtaaacaggttcgcacaacgaaagcaacaccgtttcatcattgttcgccagtgctactgcgttcaatcca |
205 |
Q |
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| T |
7055792 |
tgtttctatcggactcttgcgctttgttccgtaaatgggttcgcatatcggaagcaacacagtttcatcattgctcgctagtactacattgttcaaacca |
7055891 |
T |
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| Q |
206 |
ctctca |
211 |
Q |
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| T |
7055892 |
ctctca |
7055897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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