View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5109_low_3 (Length: 373)
Name: NF5109_low_3
Description: NF5109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5109_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 3 - 175
Target Start/End: Complemental strand, 21269598 - 21269426
Alignment:
| Q |
3 |
ccttcatttccttctttctcaccaccaccaccttctttgtctttctttggttgaactacctcaacctttctcttaagcttctctgataaattctcaacta |
102 |
Q |
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| T |
21269598 |
ccttcatttccttctttctcaccaccaccaccttctttgtctttctttggttgaactacctcaacctttctctttagcttctgtgataaattctctacta |
21269499 |
T |
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| Q |
103 |
gctttttcacatccattgcacccttcacagtcacattatctttctctttatcaactttcatttcaagcactcc |
175 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21269498 |
gctttttcacatccattgtacccttcacagtcacattatctttctctttatcaactttcatttcaagcactcc |
21269426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 243 - 356
Target Start/End: Complemental strand, 21269355 - 21269242
Alignment:
| Q |
243 |
aatattgaaaaataaaaacccacctttagttttcataacaattttcccaatcttatcaatacatccttgacagtgtagtaccaatttcaaaacagaagtg |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21269355 |
aatattgaaaaataaaaacccacctttagttttcataacaattttcccaatcttatcaatacatccttgacagtgtagtaccaatttcaaaacagaagtg |
21269256 |
T |
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| Q |
343 |
gtaattgactgtta |
356 |
Q |
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|||||||||||||| |
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| T |
21269255 |
gtaattgactgtta |
21269242 |
T |
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