View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110-Insertion-1 (Length: 968)
Name: NF5110-Insertion-1
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110-Insertion-1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 628; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 218 - 968
Target Start/End: Original strand, 49330228 - 49330993
Alignment:
| Q |
218 |
aaaatctaggcaacttatttcattcagctctatttcaccaatttaagcataccatagaggaagccgcaatcaatcaatcagtcaaacactaaccgcgtgt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49330228 |
aaaatctaggcaacttatttcattcagctctatttcaccaatttaagcataccatagaggaagccgcaatcaatcaatcagtcaaacactaaccgcgtga |
49330327 |
T |
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| Q |
318 |
tttggcttcaccatgacaaaaaatgatttttaactaatagattttgttatattgatttttgttaaaagttagttgaaagtgaactaaattatgtttggat |
417 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49330328 |
tttggcttcaccatgacaaaaaataatttttaactaatagattttgttatattgattttggttaaaagttagttgaaagtgaactaaattatgtttggat |
49330427 |
T |
|
| Q |
418 |
atatctacctaaaatgagttgagcggtaaatttaagtataaaaaatatttggagttcaaagctacaaattttagtgttaaataagaataaattctgaaag |
517 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49330428 |
atatctacctaaagtgagttgagcggtaaatttaaatataaaaaacatttggagttcaaagctacaaattttagtgttaaataagaataaattttgaaag |
49330527 |
T |
|
| Q |
518 |
aaatctcaattcaaatcgatatcaatattcaaatatgtcaaaatcaattttgaatgtttgaaatccttatgttcgccgaaaccaaaaaacaccctagatg |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
49330528 |
aaatctcaattcaaatcgatatcaatattcaaatatgtcaaaatcaattttaaatgtctgaaatccttatattccccgaaaccaaaaaacaccctagatg |
49330627 |
T |
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| Q |
618 |
catgtttgtttccaatgaaaatggccatggaaagcgtgaatggcaagctaaaccaaattcaaaacatacaaaatcatgcaattttccgcctgag-aaaaa |
716 |
Q |
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| T |
49330628 |
catgtttgtttccaatgaaaatggccatggaaagcgtgaatggcaagctaaaccaaattcaaaacatacaaaatcatgcaattttccgcatgagaaaaaa |
49330727 |
T |
|
| Q |
717 |
atatgggacatcaatttctatgggtgacttttttgagtgt----cgtgtcctacaaacatgttcttttacaactgacttaagagattttaactatgttat |
812 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49330728 |
atatgggacatcaatttctatgggtgacttttttgagtgtcgtgcgtgtcctacaaacatgttcttttacaactgacttaagagattttaactatgttat |
49330827 |
T |
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| Q |
813 |
ctaaagttacagtgttaaattcttcacactcatttcatgtagataaaatggtgggtgg----gagagataataac-aatg-aaaaaaggcacataatcat |
906 |
Q |
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| T |
49330828 |
ctaaagttacagtgttaaattcttcacactcatttcatgtagataaaatggtgggtgggagagagagataataacaaatgaaaaaaaggcacataatcat |
49330927 |
T |
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| Q |
907 |
cc-aaatattac-actcattttttcataagcttac-aaagtaccaactggaaacg-tatcacaaat |
968 |
Q |
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| T |
49330928 |
ccaaaatattacaactcattttttcataagcttacaaaagtaccaactggaaacgttatcacaaat |
49330993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 49329837 - 49330032
Alignment:
| Q |
21 |
ttcttagcatttcaactaaaataatagatagatcattcttttaaaggcgaagtggttgcaacttaaagaataatgtcactttgtaaatcaagcaacgagt |
120 |
Q |
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|||| ||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49329837 |
ttctgagcatttcaactaaaataatagaaaggtcattcttttaaaggcgaagtgtttgcaacttaaagaataatgtcactttgtaaatcaagcaacgagt |
49329936 |
T |
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| Q |
121 |
ttcccatatgaaacttaagggtatgta--atatgtttaggttgatggtataaggtggaatgaagtgtaataaaactgatctccataacatttattt |
214 |
Q |
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| T |
49329937 |
ttcccatatgaaacttaagggtatgtaatatatgtttaggttgatggtataaggtggaataaagtgtaataaaactgatctccataacatttattt |
49330032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 31246330 - 31246380
Alignment:
| Q |
368 |
attgatttttgttaaaagttagttgaaagtgaactaaattatgtttggata |
418 |
Q |
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||||||||||||||||||| ||||||| ||||| | | ||||||||||||| |
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| T |
31246330 |
attgatttttgttaaaagtgagttgaatgtgaattgatttatgtttggata |
31246380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 42752193 - 42752243
Alignment:
| Q |
368 |
attgatttttgttaaaagttagttgaaagtgaactaaattatgtttggata |
418 |
Q |
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||||||||||||||||||| ||||||| ||||| | | ||||||||||||| |
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| T |
42752193 |
attgatttttgttaaaagtgagttgaatgtgaattgatttatgtttggata |
42752243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 368 - 418
Target Start/End: Complemental strand, 47022026 - 47021976
Alignment:
| Q |
368 |
attgatttttgttaaaagttagttgaaagtgaactaaattatgtttggata |
418 |
Q |
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||||||||| ||||||||| ||||||||||||| | | ||||||||||||| |
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| T |
47022026 |
attgattttggttaaaagtaagttgaaagtgaattgatttatgtttggata |
47021976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 386482 - 386535
Alignment:
| Q |
367 |
tattgatttttgttaaaagttagttgaaagtgaactaaattatgtttggatata |
420 |
Q |
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|||||||||| |||||||||||| |||| ||||| | | ||||||||||||||| |
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| T |
386482 |
tattgattttggttaaaagttagctgaatgtgaattgatttatgtttggatata |
386535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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