View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110-Insertion-12 (Length: 594)

Name: NF5110-Insertion-12
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110-Insertion-12
NF5110-Insertion-12
[»] chr2 (39 HSPs)
chr2 (230-441)||(25426628-25426845)
chr2 (489-594)||(40469686-40469791)
chr2 (57-141)||(2438664-2438754)
chr2 (57-108)||(5040758-5040809)
chr2 (517-594)||(24832351-24832428)
chr2 (517-594)||(30190943-30191020)
chr2 (63-108)||(15972903-15972948)
chr2 (57-98)||(19536391-19536432)
chr2 (518-554)||(15920799-15920835)
chr2 (57-101)||(30404841-30404885)
chr2 (57-108)||(28596493-28596544)
chr2 (59-109)||(6940281-6940331)
chr2 (517-594)||(11883643-11883720)
chr2 (59-101)||(18841004-18841046)
chr2 (60-98)||(21624294-21624332)
chr2 (517-554)||(11883923-11883960)
chr2 (517-593)||(15321410-15321486)
chr2 (57-147)||(20242666-20242762)
chr2 (517-554)||(30191222-30191259)
chr2 (57-101)||(5367216-5367260)
chr2 (517-549)||(6171175-6171207)
chr2 (57-97)||(18421987-18422027)
chr2 (519-551)||(20347185-20347217)
chr2 (518-554)||(26737501-26737537)
chr2 (487-553)||(32673141-32673206)
chr2 (518-554)||(40469448-40469484)
chr2 (491-594)||(20347421-20347524)
chr2 (57-108)||(37559001-37559052)
chr2 (70-108)||(12224260-12224298)
chr2 (520-550)||(32672865-32672895)
chr2 (57-146)||(44635522-44635612)
chr2 (518-551)||(7591850-7591883)
chr2 (57-98)||(18255974-18256015)
chr2 (61-98)||(20473350-20473387)
chr2 (517-549)||(6495723-6495755)
chr2 (110-146)||(11223793-11223829)
chr2 (59-91)||(11223864-11223896)
chr2 (61-97)||(27460065-27460101)
chr2 (59-99)||(43585998-43586038)
[»] chr4 (40 HSPs)
chr4 (57-146)||(49431050-49431145)
chr4 (57-146)||(23292926-23293021)
chr4 (57-108)||(54580007-54580058)
chr4 (517-594)||(3930437-3930514)
chr4 (57-99)||(12797331-12797373)
chr4 (57-98)||(6879459-6879500)
chr4 (517-554)||(13198903-13198940)
chr4 (57-98)||(42640553-42640594)
chr4 (57-101)||(4157173-4157217)
chr4 (57-101)||(4157460-4157504)
chr4 (57-101)||(28964239-28964283)
chr4 (57-101)||(29205468-29205512)
chr4 (68-108)||(34306788-34306828)
chr4 (60-99)||(16073421-16073460)
chr4 (520-554)||(16555538-16555572)
chr4 (59-101)||(21945529-21945571)
chr4 (59-100)||(2361967-2362008)
chr4 (517-554)||(22681594-22681631)
chr4 (57-101)||(8423709-8423753)
chr4 (57-101)||(12895265-12895309)
chr4 (107-147)||(18513174-18513214)
chr4 (57-101)||(35157976-35158020)
chr4 (520-551)||(8488211-8488242)
chr4 (517-587)||(27304736-27304806)
chr4 (517-587)||(39415244-39415314)
chr4 (520-554)||(11241412-11241446)
chr4 (517-554)||(3930198-3930235)
chr4 (57-90)||(6485613-6485646)
chr4 (517-554)||(7603163-7603200)
chr4 (110-147)||(11596296-11596333)
chr4 (517-554)||(18077199-18077236)
chr4 (518-551)||(24775783-24775816)
chr4 (59-92)||(30298973-30299006)
chr4 (59-92)||(30327841-30327874)
chr4 (517-554)||(35393773-35393810)
chr4 (517-554)||(49178813-49178850)
chr4 (58-98)||(482232-482272)
chr4 (59-107)||(13307903-13307951)
chr4 (68-108)||(38846996-38847036)
chr4 (57-101)||(40179627-40179671)
[»] chr6 (47 HSPs)
chr6 (57-147)||(4877967-4878062)
chr6 (57-146)||(34595158-34595253)
chr6 (57-108)||(28152122-28152173)
chr6 (517-594)||(3403946-3404023)
chr6 (57-108)||(17841573-17841624)
chr6 (59-106)||(28715321-28715368)
chr6 (58-101)||(32978890-32978933)
chr6 (517-594)||(18242113-18242190)
chr6 (517-594)||(21031998-21032075)
chr6 (517-554)||(18241874-18241911)
chr6 (59-99)||(6898274-6898314)
chr6 (57-108)||(853843-853894)
chr6 (59-97)||(7977825-7977863)
chr6 (518-587)||(11656746-11656815)
chr6 (57-98)||(403858-403899)
chr6 (57-98)||(426508-426549)
chr6 (517-554)||(12714451-12714488)
chr6 (61-98)||(16388211-16388248)
chr6 (517-554)||(33972013-33972050)
chr6 (57-101)||(8776964-8777008)
chr6 (68-108)||(23771613-23771653)
chr6 (59-99)||(26402673-26402713)
chr6 (517-553)||(30388360-30388396)
chr6 (57-92)||(9911528-9911563)
chr6 (57-92)||(10770674-10770709)
chr6 (57-92)||(16766721-16766756)
chr6 (57-108)||(24645505-24645556)
chr6 (517-551)||(3403737-3403771)
chr6 (517-551)||(10039695-10039729)
chr6 (517-547)||(31598732-31598762)
chr6 (57-107)||(33001274-33001324)
chr6 (110-147)||(426477-426514)
chr6 (517-554)||(3825546-3825583)
chr6 (8-92)||(8713953-8714039)
chr6 (57-90)||(9522915-9522948)
chr6 (517-554)||(13579648-13579685)
chr6 (517-546)||(21032285-21032314)
chr6 (59-92)||(21395308-21395341)
chr6 (58-99)||(27904029-27904070)
chr6 (57-97)||(1700376-1700416)
chr6 (57-93)||(3209406-3209442)
chr6 (57-97)||(7265588-7265628)
chr6 (57-101)||(7378003-7378047)
chr6 (57-101)||(7740665-7740709)
chr6 (57-93)||(7801155-7801191)
chr6 (57-101)||(16833332-16833376)
chr6 (57-101)||(19040376-19040420)
[»] chr1 (35 HSPs)
chr1 (57-147)||(22881566-22881651)
chr1 (57-146)||(18337353-18337448)
chr1 (57-101)||(22515878-22515922)
chr1 (57-101)||(51410049-51410093)
chr1 (63-147)||(37598861-37598951)
chr1 (57-141)||(40258878-40258968)
chr1 (61-108)||(46348367-46348414)
chr1 (517-594)||(47955326-47955403)
chr1 (57-147)||(1815281-1815377)
chr1 (58-146)||(2218264-2218347)
chr1 (517-553)||(8108741-8108777)
chr1 (57-101)||(38078652-38078696)
chr1 (59-98)||(19058850-19058889)
chr1 (59-98)||(41877464-41877503)
chr1 (57-141)||(42359394-42359484)
chr1 (520-554)||(17518325-17518359)
chr1 (60-98)||(24334699-24334737)
chr1 (517-554)||(13589656-13589693)
chr1 (517-554)||(31848189-31848226)
chr1 (517-554)||(41083208-41083245)
chr1 (517-554)||(47955605-47955642)
chr1 (492-549)||(22149701-22149758)
chr1 (57-92)||(24577186-24577221)
chr1 (61-146)||(35702542-35702619)
chr1 (57-92)||(47989521-47989556)
chr1 (517-554)||(1176856-1176893)
chr1 (59-92)||(6612171-6612204)
chr1 (517-554)||(17518599-17518636)
chr1 (59-108)||(18190092-18190141)
chr1 (57-98)||(21620979-21621020)
chr1 (57-106)||(30749864-30749913)
chr1 (57-106)||(30771315-30771364)
chr1 (57-98)||(31672889-31672930)
chr1 (489-551)||(49284401-49284463)
chr1 (110-146)||(16812639-16812675)
[»] chr3 (35 HSPs)
chr3 (57-146)||(55401099-55401194)
chr3 (517-594)||(10293628-10293705)
chr3 (57-108)||(10954976-10955027)
chr3 (59-146)||(20503491-20503584)
chr3 (517-554)||(10293906-10293943)
chr3 (517-554)||(20968738-20968775)
chr3 (57-98)||(25775533-25775574)
chr3 (57-109)||(3865698-3865750)
chr3 (57-96)||(8587017-8587056)
chr3 (57-108)||(28918025-28918078)
chr3 (57-147)||(40993274-40993370)
chr3 (57-97)||(51206348-51206388)
chr3 (57-92)||(1509563-1509598)
chr3 (69-108)||(7171537-7171576)
chr3 (57-96)||(8593161-8593200)
chr3 (59-98)||(16000010-16000049)
chr3 (517-587)||(18875155-18875225)
chr3 (57-92)||(27505270-27505305)
chr3 (517-552)||(47871121-47871156)
chr3 (111-141)||(15544768-15544798)
chr3 (63-101)||(26492196-26492234)
chr3 (517-550)||(4947279-4947312)
chr3 (57-98)||(7928474-7928515)
chr3 (61-98)||(8383285-8383322)
chr3 (518-551)||(9026756-9026789)
chr3 (518-551)||(14015964-14015997)
chr3 (519-548)||(17441066-17441095)
chr3 (517-550)||(18874902-18874935)
chr3 (57-98)||(35994733-35994773)
chr3 (57-101)||(8789541-8789585)
chr3 (57-97)||(10268481-10268521)
chr3 (57-101)||(10335277-10335321)
chr3 (110-146)||(11610592-11610628)
chr3 (517-553)||(17372318-17372354)
chr3 (57-89)||(26508134-26508166)
[»] chr5 (30 HSPs)
chr5 (57-141)||(21191001-21191091)
chr5 (57-146)||(21576685-21576780)
chr5 (57-147)||(43564905-43565001)
chr5 (57-101)||(15884012-15884056)
chr5 (517-594)||(18433035-18433112)
chr5 (57-98)||(6247646-6247687)
chr5 (517-554)||(18433313-18433350)
chr5 (517-554)||(25175148-25175185)
chr5 (57-97)||(33178049-33178089)
chr5 (57-146)||(42893384-42893479)
chr5 (59-146)||(24906252-24906334)
chr5 (517-552)||(25116060-25116095)
chr5 (517-594)||(26020470-26020547)
chr5 (517-550)||(41382912-41382945)
chr5 (57-101)||(28588665-28588709)
chr5 (564-594)||(12441269-12441299)
chr5 (57-91)||(21351906-21351940)
chr5 (517-551)||(22428953-22428987)
chr5 (517-551)||(22429196-22429230)
chr5 (520-550)||(23011383-23011413)
chr5 (520-553)||(5187828-5187861)
chr5 (59-92)||(21542056-21542089)
chr5 (517-554)||(33324835-33324872)
chr5 (57-147)||(6770567-6770656)
chr5 (59-95)||(8420053-8420089)
chr5 (59-107)||(27932261-27932309)
chr5 (57-101)||(30502379-30502423)
chr5 (57-101)||(30542722-30542766)
chr5 (517-549)||(31569926-31569958)
chr5 (111-147)||(40000492-40000528)
[»] scaffold0319 (2 HSPs)
scaffold0319 (517-594)||(6654-6731)
scaffold0319 (517-554)||(6414-6451)
[»] chr8 (48 HSPs)
chr8 (517-594)||(43245891-43245968)
chr8 (5-92)||(25566814-25566900)
chr8 (57-108)||(20873093-20873144)
chr8 (57-108)||(40332215-40332266)
chr8 (517-594)||(765754-765831)
chr8 (57-99)||(4948676-4948718)
chr8 (517-594)||(15156142-15156219)
chr8 (517-587)||(37752381-37752450)
chr8 (517-594)||(41662360-41662437)
chr8 (517-554)||(9465871-9465908)
chr8 (517-554)||(15155903-15155940)
chr8 (517-554)||(18020085-18020122)
chr8 (57-147)||(18407743-18407839)
chr8 (57-98)||(24613544-24613585)
chr8 (517-554)||(34313783-34313820)
chr8 (57-146)||(36450694-36450789)
chr8 (57-108)||(5813616-5813667)
chr8 (520-554)||(12281423-12281457)
chr8 (520-554)||(41662130-41662164)
chr8 (517-554)||(16928962-16928999)
chr8 (517-554)||(16929239-16929276)
chr8 (59-108)||(22596020-22596069)
chr8 (519-594)||(74942-75016)
chr8 (57-97)||(13844591-13844631)
chr8 (110-146)||(26902104-26902140)
chr8 (57-101)||(31557020-31557064)
chr8 (57-92)||(2572056-2572091)
chr8 (57-92)||(8342996-8343031)
chr8 (61-108)||(15023241-15023288)
chr8 (58-101)||(33405375-33405418)
chr8 (57-107)||(3025575-3025625)
chr8 (517-551)||(3463660-3463694)
chr8 (113-147)||(22197670-22197704)
chr8 (517-551)||(22851410-22851444)
chr8 (520-554)||(23123514-23123548)
chr8 (68-98)||(30271249-30271279)
chr8 (57-106)||(4786324-4786373)
chr8 (57-98)||(8343340-8343381)
chr8 (520-553)||(9930837-9930870)
chr8 (59-92)||(24669459-24669492)
chr8 (57-94)||(30077385-30077422)
chr8 (517-554)||(43162253-43162290)
chr8 (517-554)||(43162536-43162573)
chr8 (517-554)||(43246173-43246210)
chr8 (517-550)||(43598756-43598789)
chr8 (68-108)||(926772-926812)
chr8 (517-553)||(7127672-7127708)
chr8 (57-101)||(31580118-31580162)
[»] chr7 (30 HSPs)
chr7 (59-146)||(21880178-21880271)
chr7 (57-108)||(15680833-15680884)
chr7 (517-594)||(9412282-9412359)
chr7 (517-554)||(3687374-3687411)
chr7 (61-108)||(21864836-21864883)
chr7 (57-108)||(25481926-25481977)
chr7 (517-551)||(5349733-5349767)
chr7 (520-554)||(9412046-9412080)
chr7 (517-594)||(3687614-3687690)
chr7 (517-554)||(8953886-8953923)
chr7 (57-101)||(33994236-33994280)
chr7 (57-92)||(2334274-2334309)
chr7 (57-92)||(9408334-9408369)
chr7 (57-92)||(18039023-18039058)
chr7 (57-100)||(18213025-18213068)
chr7 (57-100)||(19213827-19213870)
chr7 (57-92)||(21560527-21560562)
chr7 (57-92)||(24339666-24339701)
chr7 (520-551)||(35080223-35080254)
chr7 (523-553)||(5349489-5349519)
chr7 (59-101)||(8234172-8234214)
chr7 (59-97)||(28155596-28155634)
chr7 (517-550)||(6908232-6908265)
chr7 (57-98)||(11061070-11061111)
chr7 (517-554)||(13772898-13772935)
chr7 (59-92)||(27945067-27945100)
chr7 (517-554)||(29291826-29291863)
chr7 (519-552)||(34235977-34236010)
chr7 (517-550)||(38191566-38191599)
chr7 (59-99)||(25956471-25956511)
[»] scaffold0192 (1 HSPs)
scaffold0192 (517-593)||(25327-25403)
[»] scaffold0083 (1 HSPs)
scaffold0083 (59-107)||(45515-45563)
[»] scaffold0802 (2 HSPs)
scaffold0802 (517-594)||(1377-1454)
scaffold0802 (517-554)||(1138-1175)
[»] scaffold0110 (2 HSPs)
scaffold0110 (517-594)||(45764-45841)
scaffold0110 (517-554)||(45556-45593)
[»] scaffold0053 (1 HSPs)
scaffold0053 (68-146)||(8833-8917)
[»] scaffold0050 (1 HSPs)
scaffold0050 (59-108)||(70304-70353)
[»] scaffold0652 (1 HSPs)
scaffold0652 (57-100)||(454-497)
[»] scaffold0512 (1 HSPs)
scaffold0512 (70-108)||(5020-5058)
[»] scaffold0001 (1 HSPs)
scaffold0001 (517-582)||(438950-439015)
[»] scaffold0025 (1 HSPs)
scaffold0025 (34-92)||(23771-23829)
[»] scaffold0009 (1 HSPs)
scaffold0009 (517-554)||(205706-205743)
[»] scaffold0002 (1 HSPs)
scaffold0002 (517-554)||(411942-411979)
[»] scaffold0011 (1 HSPs)
scaffold0011 (57-91)||(17750-17784)
[»] scaffold0004 (1 HSPs)
scaffold0004 (57-91)||(123652-123686)
[»] scaffold1221 (1 HSPs)
scaffold1221 (517-554)||(1781-1818)
[»] scaffold0376 (1 HSPs)
scaffold0376 (517-554)||(7597-7634)
[»] scaffold0361 (1 HSPs)
scaffold0361 (57-108)||(14554-14602)
[»] scaffold0015 (1 HSPs)
scaffold0015 (517-554)||(16871-16908)
[»] scaffold0598 (1 HSPs)
scaffold0598 (517-549)||(6627-6659)
[»] scaffold0021 (1 HSPs)
scaffold0021 (57-89)||(130506-130538)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 1e-98; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 230 - 441
Target Start/End: Complemental strand, 25426845 - 25426628
Alignment:
Q  230 ccttgaagaagagatggaaattgggggagttggtggcgggagggaaagagtggttgaggagaagtttgaggtgttggacggtggaagagcgagtgatgtg 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25426845 ccttgaagaagagatggaaattgggggagttggtggcgggagggaaagagtggttgaggagaagtttgagttgttggacggtggaagagcgagtgatgtg 25426746  T
Q  330 aagagtgatggattcaccggtcagggttcggatttgaatttccttctctttgctgtcttctgccattgctcgcaactgcaa------ctgcgtgggaaat 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||      |||||||||||||    
T  25426745 aagagtgatggattcaccggtcagggttcggatttgaatttccttctcgttgctgtcttctgccattgctcgcaactgcaactgcaactgcgtgggaaat 25426646  T
Q  424 gcttgcagcgctttttcg 441  Q
    | ||||||||||||||||    
T  25426645 gtttgcagcgctttttcg 25426628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 489 - 594
Target Start/End: Complemental strand, 40469791 - 40469686
Alignment:
Q  489 aaaataaaggtttaattgcacnnnnnnnccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatattttt 588  Q
    |||| ||||||||||||||||       |||||||||||| |||||||||||||||||||||||||         ||||||||||||||||||| |||||    
T  40469791 aaaaaaaaggtttaattgcactttttccccctatcttttgctaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatcttttt 40469692  T
Q  589 gccccc 594  Q
    ||||||    
T  40469691 gccccc 40469686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 2438754 - 2438664
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt------ccaggacacgccttatctgaggagtgtccgtgctt 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||  |||      || |||||||||| ||| |||||||||||||||||    
T  2438754 tcacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgctt 2438664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 5040758 - 5040809
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||| | |||||||||||||||||||||||||||||||| ||||||    
T  5040758 tcacataattcaatgtaattacaagtgtcggtgtcggacacgacatgtgtcc 5040809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 594
Target Start/End: Original strand, 24832351 - 24832428
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    |||||||||||| |||||||||||||||||||||| ||         ||||||||||||||||||| |||||||||||    
T  24832351 ccctatcttttgctaattgtgcgattttgcaccccatctttttttttgagcgattttgcaccccatctttttgccccc 24832428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 594
Target Start/End: Original strand, 30190943 - 30191020
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    ||||||||||||  ||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||    
T  30190943 ccctatcttttgccaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccc 30191020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 15972903 - 15972948
Alignment:
Q  63 aattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||    
T  15972903 aattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtcc 15972948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 19536432 - 19536391
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  19536432 tcacataattcagtgtaattacaagtgtcggtgtcggacacg 19536391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 518 - 554
Target Start/End: Original strand, 15920799 - 15920835
Alignment:
Q  518 cctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||||||||||||||||||||||||||||    
T  15920799 cctatcttttgttaattgtgcgattttgcaccccctc 15920835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 30404885 - 30404841
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  30404885 tcacataattcagtgtaattacaagtgtcggcgtcggacacgaca 30404841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 28596493 - 28596544
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||| | |||||||||| ||||||||||||||||||||||| ||||||    
T  28596493 tcacataagtcagtgtaattataagtgtcggtgtcggacacgacacgtgtcc 28596544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 6940281 - 6940331
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcca 109  Q
    |||||||| ||||||||||||||||||||| || ||||||||| |||||||    
T  6940281 acataattaagtgtaattacaagtgtcggtatccgacacgacacgtgtcca 6940331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 517 - 594
Target Start/End: Original strand, 11883643 - 11883720
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    |||||||||||| |||||||||||||||||||||||||         |||| |||||||||| ||| |||||||||||    
T  11883643 ccctatcttttgctaattgtgcgattttgcaccccctctttttttttgagcaattttgcacctcatctttttgccccc 11883720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 18841046 - 18841004
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||| |||||||||||||||||||||||| |||||||||    
T  18841046 acataattaagtgtaattacaagtgtcggtgtcagacacgaca 18841004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 21624294 - 21624332
Alignment:
Q  60 cataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  21624294 cataattcagtgtaattacaagtgtcggtgtcggacacg 21624332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 11883960 - 11883923
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||| |||||||||||||||||||||||||    
T  11883960 ccctatcttttgctaattgtgcgattttgcaccccctc 11883923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 593
Target Start/End: Original strand, 15321410 - 15321486
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgcccc 593  Q
    |||||||||||||||||||||| |||||||| |||||          ||||||||||||||||||| ||||||||||    
T  15321410 ccctatcttttgttaattgtgcaattttgcatcccctattttattttgagcgattttgcaccccatctttttgcccc 15321486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 20242762 - 20242666
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt------ccaggacacgccttatctgaggagtgtccgtgctttatagg 147  Q
    |||||||||| |||||||||| | ||||||||||||||||| ||| ||||      | ||||||||||||||| || ||||||| |||||| |||||    
T  20242762 tcacataattcagtgtaattatatgtgtcggtgtcggacacaacacgtgtctgacacgaggacacgccttatccgaagagtgtctgtgcttcatagg 20242666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 30191259 - 30191222
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  30191259 ccctatcttttattaattgtgcgattttgcaccccctc 30191222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 5367216 - 5367260
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| |||||||||| | |||||||||||||||||||||    
T  5367216 tcacataattcagtgtaattatatgtgtcggtgtcggacacgaca 5367260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 517 - 549
Target Start/End: Original strand, 6171175 - 6171207
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcacc 549  Q
    |||||||||||||||||||||||||||||||||    
T  6171175 ccctatcttttgttaattgtgcgattttgcacc 6171207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 18421987 - 18422027
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacac 97  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  18421987 tcacataattcagtgtaattacaagtgtcggtgtcgaacac 18422027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 519 - 551
Target Start/End: Original strand, 20347185 - 20347217
Alignment:
Q  519 ctatcttttgttaattgtgcgattttgcacccc 551  Q
    |||||||||||||||||||||||||||||||||    
T  20347185 ctatcttttgttaattgtgcgattttgcacccc 20347217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 554
Target Start/End: Original strand, 26737501 - 26737537
Alignment:
Q  518 cctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||| |||||||||||||||||||||||||    
T  26737501 cctatcttttgctaattgtgcgattttgcaccccctc 26737537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 553
Target Start/End: Complemental strand, 32673206 - 32673141
Alignment:
Q  487 ataaaataaaggtttaattgcacnnnnnnnccctatcttttgttaattgtgcgattttgcaccccct 553  Q
    |||||||||||||||||||||||       ||||||||||||  |||||||||||||||||||||||    
T  32673206 ataaaataaaggtttaattgcactttttc-ccctatcttttgccaattgtgcgattttgcaccccct 32673141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 554
Target Start/End: Original strand, 40469448 - 40469484
Alignment:
Q  518 cctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||| |||||||||||||||||||||||||    
T  40469448 cctatcttttgctaattgtgcgattttgcaccccctc 40469484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 594
Target Start/End: Complemental strand, 20347524 - 20347421
Alignment:
Q  491 aataaaggtttaattgcacnnnnnnnccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgc 590  Q
    |||||||| ||||||||||       ||||||||||||  ||||||||||||||||||||||||         ||| ||||||||||||||| ||||||     
T  20347524 aataaaggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcaccccctctttttttttgagggattttgcaccccatctttttgt 20347425  T
Q  591 cccc 594  Q
    ||||    
T  20347424 cccc 20347421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 37559001 - 37559052
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||| | ||||||||||||||||||||||||||  |||| ||||||    
T  37559001 tcacataattcaatgtaattacaagtgtcggtgtcggacttgacacgtgtcc 37559052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 12224260 - 12224298
Alignment:
Q  70 tgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  12224260 tgtaattacaagtgtcggtgtcggacacgatacgtgtcc 12224298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 520 - 550
Target Start/End: Original strand, 32672865 - 32672895
Alignment:
Q  520 tatcttttgttaattgtgcgattttgcaccc 550  Q
    |||||||||||||||||||||||||||||||    
T  32672865 tatcttttgttaattgtgcgattttgcaccc 32672895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 44635522 - 44635612
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacac-gacaagtgtccaggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||| ||||| ||||||||||||||||||||||||||   | |||| |   ||  ||||||||| ||||||||||||||||||||| ||||    
T  44635522 tcacgtaattcagtgtaattacaagtgtcggtgtcggtgtcggacacgacaccgagacacgcctaatctgaggagtgtccgtgcttcatag 44635612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 551
Target Start/End: Complemental strand, 7591883 - 7591850
Alignment:
Q  518 cctatcttttgttaattgtgcgattttgcacccc 551  Q
    |||||||||||| |||||||||||||||||||||    
T  7591883 cctatcttttgtcaattgtgcgattttgcacccc 7591850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 18256015 - 18255974
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||||| | |||||||| ||||||||||||||||||||    
T  18256015 tcacataatttaatgtaattagaagtgtcggtgtcggacacg 18255974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 20473350 - 20473387
Alignment:
Q  61 ataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  20473350 ataattcagtgtaattacaagtgtcgatgtcggacacg 20473387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 549
Target Start/End: Complemental strand, 6495755 - 6495723
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcacc 549  Q
    ||||||||||||| |||||||||||||||||||    
T  6495755 ccctatcttttgtgaattgtgcgattttgcacc 6495723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 11223829 - 11223793
Alignment:
Q  110 ggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  11223829 ggacacgcctaatctgaggagtgtccgtgcttcatag 11223793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 11223896 - 11223864
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtc 91  Q
    |||||||| ||||||||||||||||||||||||    
T  11223896 acataattcagtgtaattacaagtgtcggtgtc 11223864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 27460065 - 27460101
Alignment:
Q  61 ataattgagtgtaattacaagtgtcggtgtcggacac 97  Q
    |||||| |||||||||||||| |||||||||||||||    
T  27460065 ataattcagtgtaattacaagggtcggtgtcggacac 27460101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 43586038 - 43585998
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacga 99  Q
    |||||||| | |||||| |||||||||||||||||||||||    
T  43586038 acataattcaatgtaatcacaagtgtcggtgtcggacacga 43585998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 49431050 - 49431145
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcca------ggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| |||||||      |||||||||||||| ||||||||||| ||||||||||    
T  49431050 tcacataattcagtgtaattaaaagtgtcggtgtcggacacgacacgtgtccaacaccgggacacgccttatccgaggagtgtccatgctttatag 49431145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 23293021 - 23292926
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt------ccaggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||||||||| ||| |||||||||||||||||||||||||||||| ||||      || |||||||||| ||| ||||||||||||||||| ||||    
T  23293021 tcacataattcagtataattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 54580058 - 54580007
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| ||||||    
T  54580058 tcacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtcc 54580007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 594
Target Start/End: Complemental strand, 3930514 - 3930437
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    |||||||||||| |||||||||||||||||||||||||          |||||||||||||||||| |||||||||||    
T  3930514 ccctatcttttgctaattgtgcgattttgcaccccctcttttttttttagcgattttgcaccccatctttttgccccc 3930437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 12797373 - 12797331
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacga 99  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  12797373 tcacataattcagtgtaattacaagtgtcggtgtcggacacga 12797331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 6879500 - 6879459
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  6879500 tcacataattaagtgtaattacaagtgtcggtgtcggacacg 6879459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 13198940 - 13198903
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13198940 ccctatcttttgttaattgtgcgattttgcaccccctc 13198903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 42640553 - 42640594
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  42640553 tcacataattcagtgtaattacaagtgtcggtgtcggacacg 42640594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 4157173 - 4157217
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| |||| |||||||||||||||||||||||||||||    
T  4157173 tcacataatttagtgcaattacaagtgtcggtgtcggacacgaca 4157217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 4157460 - 4157504
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| |||| |||||||||||||||||||||||||||||    
T  4157460 tcacataatttagtgcaattacaagtgtcggtgtcggacacgaca 4157504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 28964283 - 28964239
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| |||||||||||||||||| |||||||||||||||    
T  28964283 tcacataattcagtgtaattacaagtgtctgtgtcggacacgaca 28964239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 29205468 - 29205512
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||    
T  29205468 tcacataattcagtgtaattacaagtgtcggtgttggacacgaca 29205512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 34306828 - 34306788
Alignment:
Q  68 agtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  34306828 agtgtaattacaagtgtcggtgtcggacacgacacgtgtcc 34306788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 16073421 - 16073460
Alignment:
Q  60 cataattgagtgtaattacaagtgtcggtgtcggacacga 99  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  16073421 cataattcagtgtaattacaagtgtcggtgtcggacacga 16073460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 520 - 554
Target Start/End: Original strand, 16555538 - 16555572
Alignment:
Q  520 tatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||||||||||||||||||||||||||    
T  16555538 tatcttttgttaattgtgcgattttgcaccccctc 16555572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 21945529 - 21945571
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||| ||||||||||||||||||||||||||||| ||||    
T  21945529 acataattcagtgtaattacaagtgtcggtgtcggacatgaca 21945571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 2362008 - 2361967
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacgac 100  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  2362008 acataatttagtgtaattaaaagtgtcggtgtcggacacgac 2361967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 22681594 - 22681631
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  22681594 ccctatcttttgtcaattgtgcgattttgcaccccctc 22681631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 8423753 - 8423709
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| |||||||||| || ||||||||||||||||||||    
T  8423753 tcacataattcagtgtaattataaatgtcggtgtcggacacgaca 8423709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 12895309 - 12895265
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    ||||||||||  ||||||||| |||||||||||||||||||||||    
T  12895309 tcacataattttgtgtaattataagtgtcggtgtcggacacgaca 12895265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 18513214 - 18513174
Alignment:
Q  107 ccaggacacgccttatctgaggagtgtccgtgctttatagg 147  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  18513214 ccaggacacgcctaatctgaggagtgtccgtgcttcatagg 18513174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 35158020 - 35157976
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||    
T  35158020 tcacataatttagtgtaattataagtgtcggtgtctgacacgaca 35157976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 551
Target Start/End: Original strand, 8488211 - 8488242
Alignment:
Q  520 tatcttttgttaattgtgcgattttgcacccc 551  Q
    ||||||||||||||||||||||||||||||||    
T  8488211 tatcttttgttaattgtgcgattttgcacccc 8488242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 587
Target Start/End: Original strand, 27304736 - 27304806
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttt 587  Q
    ||||||||| || |||||||||||||||||||||||||         ||||||||||||| ||||||||||    
T  27304736 ccctatcttctgctaattgtgcgattttgcaccccctcttttcttttgagcgattttgcaacccatatttt 27304806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 587
Target Start/End: Original strand, 39415244 - 39415314
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttt 587  Q
    |||||||||||| ||||||||||||||||||||| |||         ||||||||||||||||||| ||||    
T  39415244 ccctatcttttgctaattgtgcgattttgcaccctctctttttatttgagcgattttgcaccccatctttt 39415314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 520 - 554
Target Start/End: Original strand, 11241412 - 11241446
Alignment:
Q  520 tatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||||||||||||||||||| ||||||    
T  11241412 tatcttttgttaattgtgcgattttgcatcccctc 11241446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 3930198 - 3930235
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  3930198 ccctatcttttattaattatgcgattttgcaccccctc 3930235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 6485646 - 6485613
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgt 90  Q
    |||||||||| |||||||||||||||||||||||    
T  6485646 tcacataatttagtgtaattacaagtgtcggtgt 6485613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 7603163 - 7603200
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  7603163 ccctatctttttttaattgtgcaattttgcaccccctc 7603200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 11596333 - 11596296
Alignment:
Q  110 ggacacgccttatctgaggagtgtccgtgctttatagg 147  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  11596333 ggacacgcctaatctgaggagtgtccgtgcttcatagg 11596296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 18077236 - 18077199
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  18077236 ccctattttttgctaattgtgcgattttgcaccccctc 18077199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 551
Target Start/End: Complemental strand, 24775816 - 24775783
Alignment:
Q  518 cctatcttttgttaattgtgcgattttgcacccc 551  Q
    |||||||||||| |||||||||||||||||||||    
T  24775816 cctatcttttgtcaattgtgcgattttgcacccc 24775783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 30298973 - 30299006
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||| |||||||||||||||||||||||||    
T  30298973 acataattcagtgtaattacaagtgtcggtgtcg 30299006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 30327841 - 30327874
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||| |||||||||||||||||||||||||    
T  30327841 acataattcagtgtaattacaagtgtcggtgtcg 30327874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 35393810 - 35393773
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  35393810 ccctatcttttgctaattgtgcgaatttgcaccccctc 35393773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 49178850 - 49178813
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  49178850 ccctatcttttgccaattgtgcgattttgcaccccctc 49178813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 482272 - 482232
Alignment:
Q  58 cacataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    ||||||||| |||||||||| || |||||||||||||||||    
T  482272 cacataattcagtgtaattataactgtcggtgtcggacacg 482232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 13307903 - 13307951
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtc 107  Q
    |||||||| | |||||| |||||||| |||||||||||||||| |||||    
T  13307903 acataattcaatgtaatcacaagtgttggtgtcggacacgacacgtgtc 13307951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 38847036 - 38846996
Alignment:
Q  68 agtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||||||||||| |||||||| |||||| ||||||    
T  38847036 agtgtaattacaagtgtcagtgtcggatacgacacgtgtcc 38846996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 40179671 - 40179627
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| |||||||||| | | |||||||||||||||||||    
T  40179671 tcacataattcagtgtaattatatgcgtcggtgtcggacacgaca 40179627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 47)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 4877967 - 4878062
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtc-----caggacacgccttatctgaggagtgtccgtgctttatagg 147  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||  ||||     |||||||||||| ||| ||||||||||||||||| |||||    
T  4877967 tcacataattaagtataattacaagtgtcggtgtcggacacgacacatgtccgacacaggacacgcctaatccgaggagtgtccgtgcttcatagg 4878062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 34595158 - 34595253
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt------ccaggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||      || |||||| ||| ||| ||||||||||||||||| ||||    
T  34595158 tcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 34595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 28152122 - 28152173
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  28152122 tcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtcc 28152173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 517 - 594
Target Start/End: Complemental strand, 3404023 - 3403946
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    |||||||||||| |||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||    
T  3404023 ccctatcttttgctaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccc 3403946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 17841624 - 17841573
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  17841624 tcacataatttagtgtaattacaagtgacggtgtcggacacgacatgtgtcc 17841573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 28715321 - 28715368
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt 106  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||    
T  28715321 acataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgt 28715368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 32978933 - 32978890
Alignment:
Q  58 cacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  32978933 cacataattaagtgtaattacaagtgtcggtgtcggacacgaca 32978890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 594
Target Start/End: Complemental strand, 18242190 - 18242113
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    ||||||||||||  ||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||    
T  18242190 ccctatcttttgccaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccc 18242113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 594
Target Start/End: Original strand, 21031998 - 21032075
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    ||||| |||||| |||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||    
T  21031998 ccctaacttttgctaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccc 21032075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 18241874 - 18241911
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18241874 ccctatcttttgttaattgtgcgattttgcaccccctc 18241911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 6898314 - 6898274
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacga 99  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  6898314 acataattaagtgtaattacaagtgtcggtgtcggacacga 6898274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 853894 - 853843
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||| |||| |||||||||||||||||||||| |||||| ||||||    
T  853894 tcacataattaagtgcaattacaagtgtcggtgtcggatacgacatgtgtcc 853843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 7977863 - 7977825
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacac 97  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  7977863 acataattcagtgtaattacaagtgtcggtgtcggacac 7977825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 587
Target Start/End: Complemental strand, 11656815 - 11656746
Alignment:
Q  518 cctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttt 587  Q
    ||||||||||| |||||||||||||||||||||||||         ||||||||||||||||||| ||||    
T  11656815 cctatcttttgctaattgtgcgattttgcaccccctctttatttttgagcgattttgcaccccatctttt 11656746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 403899 - 403858
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  403899 tcacataatttagtgtaactacaagtgtcggtgtcggacacg 403858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 426549 - 426508
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||||| | |||||||||||||||||||||||||||||    
T  426549 tcacataattaaatgtaattacaagtgtcggtgtcggacacg 426508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 12714451 - 12714488
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  12714451 ccctatcttttgttaattgtgcgattttgcagcccctc 12714488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 16388248 - 16388211
Alignment:
Q  61 ataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||| |||||||||||||||||||||||||||||||    
T  16388248 ataattcagtgtaattacaagtgtcggtgtcggacacg 16388211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 33972013 - 33972050
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||||||||||| |||||||||||||||||    
T  33972013 ccctatcttttgttaattgtacgattttgcaccccctc 33972050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 8777008 - 8776964
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||||    
T  8777008 tcacaaaattcagtgtaattacaagtgttggtgtcggacacgaca 8776964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 23771613 - 23771653
Alignment:
Q  68 agtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  23771613 agtgtaattacaaatgtcggtgtcggacacgacatgtgtcc 23771653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 26402713 - 26402673
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacga 99  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  26402713 acataattcagtgtaatcacaagtgtcggtgtcggacacga 26402673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 517 - 553
Target Start/End: Complemental strand, 30388396 - 30388360
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccct 553  Q
    |||||||||||| ||||||||||||||||||||||||    
T  30388396 ccctatcttttgctaattgtgcgattttgcaccccct 30388360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 9911563 - 9911528
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||||| |||||||||||||||||||||||||    
T  9911563 tcacataattcagtgtaattacaagtgtcggtgtcg 9911528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 10770709 - 10770674
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||||| |||||||||||||||||||||||||    
T  10770709 tcacataattcagtgtaattacaagtgtcggtgtcg 10770674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 16766721 - 16766756
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||||| |||||||||||||||||||||||||    
T  16766721 tcacataattcagtgtaattacaagtgtcggtgtcg 16766756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 24645505 - 24645556
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||| ||| || ||||||||||||||||| ||||||||| ||||||    
T  24645505 tcacataattcagtatagttacaagtgtcggtgtcagacacgacacgtgtcc 24645556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 551
Target Start/End: Original strand, 3403737 - 3403771
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcacccc 551  Q
    |||||||||||| ||||||||||||||||||||||    
T  3403737 ccctatcttttgctaattgtgcgattttgcacccc 3403771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 551
Target Start/End: Original strand, 10039695 - 10039729
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcacccc 551  Q
    |||||||||||| ||||||||||||||||||||||    
T  10039695 ccctatcttttgctaattgtgcgattttgcacccc 10039729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 547
Target Start/End: Complemental strand, 31598762 - 31598732
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgca 547  Q
    |||||||||||||||||||||||||||||||    
T  31598762 ccctatcttttgttaattgtgcgattttgca 31598732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 33001324 - 33001274
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtc 107  Q
    |||||||||| | |||||||| | ||||||||||||||||||||| |||||    
T  33001324 tcacataattaaatgtaattatatgtgtcggtgtcggacacgacacgtgtc 33001274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 426514 - 426477
Alignment:
Q  110 ggacacgccttatctgaggagtgtccgtgctttatagg 147  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  426514 ggacacgcctaatctgaggagtgtccgtgcttcatagg 426477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 3825546 - 3825583
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  3825546 ccctatattttgctaattgtgcgattttgcaccccctc 3825583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 8713953 - 8714039
Alignment:
Q  8 gacaccggacatgactcggaca-gt-gacacagttaataatttgnnnnnnntcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||||||||||  ||||| || ||||||||||||||||||       |||||||||| ||||||||||||| ||| |||||||    
T  8713953 gacaccggacatgacatggacacgtcgacacagttaataatttgaaaaaaatcacataattcagtgtaattacaaatgtgggtgtcg 8714039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 9522915 - 9522948
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgt 90  Q
    |||||||||| |||||||||||||||||||||||    
T  9522915 tcacataattcagtgtaattacaagtgtcggtgt 9522948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 13579685 - 13579648
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  13579685 ccctatcgtttgctaattgtgcgattttgcaccccctc 13579648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 546
Target Start/End: Complemental strand, 21032314 - 21032285
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgc 546  Q
    ||||||||||||||||||||||||||||||    
T  21032314 ccctatcttttgttaattgtgcgattttgc 21032285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 21395341 - 21395308
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||| |||||||||||||||||||||||||    
T  21395341 acataatttagtgtaattacaagtgtcggtgtcg 21395308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 27904070 - 27904029
Alignment:
Q  58 cacataattgagtgtaattacaagtgtcggtgtcggacacga 99  Q
    ||||||||| ||||||||||||| |||||||||| |||||||    
T  27904070 cacataattcagtgtaattacaaatgtcggtgtcagacacga 27904029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 1700376 - 1700416
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacac 97  Q
    ||||||| || |||||||||| |||||||||||||||||||    
T  1700376 tcacatatttcagtgtaattataagtgtcggtgtcggacac 1700416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 3209406 - 3209442
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcgg 93  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  3209406 tcacataatttagtgttattacaagtgtcggtgtcgg 3209442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 7265628 - 7265588
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacac 97  Q
    |||||||||| |||||||||| | |||||||||||||||||    
T  7265628 tcacataattcagtgtaattatatgtgtcggtgtcggacac 7265588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 7378003 - 7378047
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| | |||||||| | |||||||||||||||||||||    
T  7378003 tcacataattcaatgtaattatatgtgtcggtgtcggacacgaca 7378047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 7740665 - 7740709
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    ||||| ||||||||||||||| | ||||| |||||||||||||||    
T  7740665 tcacaaaattgagtgtaattatatgtgtcagtgtcggacacgaca 7740709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 7801191 - 7801155
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcgg 93  Q
    |||||||||| || |||||||||||||||||||||||    
T  7801191 tcacataattcagcgtaattacaagtgtcggtgtcgg 7801155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 16833332 - 16833376
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    ||||||| || |||||||||||||||||||||||  |||||||||    
T  16833332 tcacatacttcagtgtaattacaagtgtcggtgttagacacgaca 16833376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 19040376 - 19040420
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| |||||||||| | ||||| |||||||||||||||    
T  19040376 tcacataattcagtgtaattatatgtgtctgtgtcggacacgaca 19040420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 22881651 - 22881566
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtccaggacacgccttatctgaggagtgtccgtgctttatagg 147  Q
    |||||||||| ||||||||||||||||||||||||||||||||||     || ||||||| || ||| ||||||||||||||||| |||||    
T  22881651 tcacataatttagtgtaattacaagtgtcggtgtcggacacgaca-----ccgggacacgtctaatccgaggagtgtccgtgcttcatagg 22881566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 18337353 - 18337448
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc------aggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||||||||| |||||||||||||||||||||||||||||| ||| ||||||       ||||| |||| ||| ||||||||||||||||| ||||    
T  18337353 tcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttcatag 18337448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 22515922 - 22515878
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  22515922 tcacataatttagtgtaattacaagtgtcggtgtcggacacgaca 22515878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 51410049 - 51410093
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  51410049 tcacataattcagtgtaattacaagtgtcggtgtcggacacgaca 51410093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 37598861 - 37598951
Alignment:
Q  63 aattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc------aggacacgccttatctgaggagtgtccgtgctttatagg 147  Q
    |||| |||||||||| ||||||||||||||||||||||| ||||||       |||||||||| ||| ||||||||||||||||| |||||    
T  37598861 aattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatagg 37598951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 40258968 - 40258878
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt------ccaggacacgccttatctgaggagtgtccgtgctt 141  Q
    |||||||||| |||||||||||||||||||||||| |||||||||  |||      ||||||||||||| ||| ||||||||||| |||||    
T  40258968 tcacataattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtccatgctt 40258878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 46348414 - 46348367
Alignment:
Q  61 ataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||    
T  46348414 ataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtcc 46348367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 594
Target Start/End: Original strand, 47955326 - 47955403
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    ||||||||||||  ||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||    
T  47955326 ccctatcttttgccaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccc 47955403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 1815281 - 1815377
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt------ccaggacacgccttatctgaggagtgtccgtgctttatagg 147  Q
    |||||||||| |||||||||||||||||||||||| |||||||||  |||      || |||||||||| |||||||||||| ||||| || |||||    
T  1815281 tcacataattcagtgtaattacaagtgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatctgaggagtgaccgtgattcatagg 1815377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 2218264 - 2218347
Alignment:
Q  58 cacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtccaggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    ||||||||| |||||||||||||||||||||||||    |||||     | ||||||||||| ||||||||||||||||||||| ||||    
T  2218264 cacataatttagtgtaattacaagtgtcggtgtcgtgtccgaca-----ctaggacacgcctaatctgaggagtgtccgtgcttcatag 2218347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 517 - 553
Target Start/End: Original strand, 8108741 - 8108777
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccct 553  Q
    |||||||||||||||||||||||||||||||||||||    
T  8108741 ccctatcttttgttaattgtgcgattttgcaccccct 8108777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 38078696 - 38078652
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| | ||||||||||||||||||||||||||||||||    
T  38078696 tcacataattcaatgtaattacaagtgtcggtgtcggacacgaca 38078652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 19058889 - 19058850
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  19058889 acataattcagtgtaattacaagtgtcggtgtcggacacg 19058850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 41877503 - 41877464
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  41877503 acataatttagtgtaattacaagtgtcggtgtcggacacg 41877464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 42359484 - 42359394
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt------ccaggacacgccttatctgaggagtgtccgtgctt 141  Q
    ||||| |||| ||||||||||||||||||||||||||||| |||  ||||      || |||||||||| ||| |||||||||||||||||    
T  42359484 tcacaaaattcagtgtaattacaagtgtcggtgtcggacaagacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgctt 42359394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 520 - 554
Target Start/End: Original strand, 17518325 - 17518359
Alignment:
Q  520 tatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||||||||||||||||||||||||||    
T  17518325 tatcttttgttaattgtgcgattttgcaccccctc 17518359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 24334737 - 24334699
Alignment:
Q  60 cataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  24334737 cataattcagtgtaattacaagtgtcggtgtcggacacg 24334699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 13589693 - 13589656
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||| |||||||||||||||||||||||||    
T  13589693 ccctatcttttgctaattgtgcgattttgcaccccctc 13589656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 31848226 - 31848189
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||||||||||| |||||||||||||||||    
T  31848226 ccctatcttttgttaattgtacgattttgcaccccctc 31848189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 41083245 - 41083208
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  41083245 ccctatcttttgttagttgtgcgattttgcaccccctc 41083208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 47955642 - 47955605
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  47955642 ccctatcttttattaattgtgcgattttgcaccccctc 47955605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 549
Target Start/End: Complemental strand, 22149758 - 22149701
Alignment:
Q  492 ataaaggtttaattgcacnnnnnnnccctatcttttgttaattgtgcgattttgcacc 549  Q
    ||||||||||||||||||       |||||||||||| ||||||||||||||||||||    
T  22149758 ataaaggtttaattgcacttttcccccctatcttttgctaattgtgcgattttgcacc 22149701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 24577221 - 24577186
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||||| |||||||||||||||||||||||||    
T  24577221 tcacataattcagtgtaattacaagtgtcggtgtcg 24577186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 35702619 - 35702542
Alignment:
Q  61 ataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtccaggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||||| |||||||||||||||||| |||||||||||||    ||    |||||||||| ||| ||||||||||||||||| ||||    
T  35702619 ataattaagtgtaattacaagtgtcagtgtcggacacga----tg----ggacacgcctaatccgaggagtgtccgtgcttcatag 35702542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 47989521 - 47989556
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||||| |||||||||||||||||||||||||    
T  47989521 tcacataattcagtgtaattacaagtgtcggtgtcg 47989556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 1176856 - 1176893
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  1176856 ccctatcttttgtcaattgtgcaattttgcaccccctc 1176893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 6612204 - 6612171
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||| |||||||||||||||||||||||||    
T  6612204 acataattcagtgtaattacaagtgtcggtgtcg 6612171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 17518636 - 17518599
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  17518636 ccctatcttttgccaattgtgcgattttgcaccccctc 17518599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 18190141 - 18190092
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||| ||||||||||||||||||| |||| ||||| ||| ||||||    
T  18190141 acataattcagtgtaattacaagtgtcgatgtcagacacaacacgtgtcc 18190092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 21620979 - 21621020
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||||| |||||| ||||||| ||||||||||||||||    
T  21620979 tcacataattcagtgtatttacaagcgtcggtgtcggacacg 21621020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 30749864 - 30749913
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt 106  Q
    |||||||||| |||||||||| | ||||||||||||||||| ||| ||||    
T  30749864 tcacataattcagtgtaattatatgtgtcggtgtcggacaccacatgtgt 30749913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 30771315 - 30771364
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt 106  Q
    |||||||||| |||||||||| | ||||||||||||||||| ||| ||||    
T  30771315 tcacataattcagtgtaattatatgtgtcggtgtcggacaccacatgtgt 30771364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 31672930 - 31672889
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||| ||||| ||||||||||||||| |||||||||||||||    
T  31672930 tcacttaattcagtgtaattacaagtctcggtgtcggacacg 31672889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 551
Target Start/End: Original strand, 49284401 - 49284463
Alignment:
Q  489 aaaataaaggtttaattgcacnnnnnnnccctatcttttgttaattgtgcgattttgcacccc 551  Q
    |||||||||| ||||||||||       ||||||||||||  |||||||||||||||||||||    
T  49284401 aaaataaaggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacccc 49284463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 16812639 - 16812675
Alignment:
Q  110 ggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  16812639 ggacacgcctaatctgaggagtgtccgtgcttcatag 16812675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 55401099 - 55401194
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt------ccaggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||      ||  ||||||||| ||| ||||||||||||||||| ||||    
T  55401099 tcacataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 517 - 594
Target Start/End: Original strand, 10293628 - 10293705
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    ||||||||||||| ||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||    
T  10293628 ccctatcttttgtcaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccc 10293705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 10954976 - 10955027
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  10954976 tcacataattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgtcc 10955027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 20503491 - 20503584
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt------ccaggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||||||| ||||||||||||||||||||||| ||||||||||  |||      || |||||||||| ||| ||||||||||||||||| ||||    
T  20503491 acataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 20503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 10293943 - 10293906
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10293943 ccctatcttttgttaattgtgcgattttgcaccccctc 10293906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 20968738 - 20968775
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20968738 ccctatcttttgttaattgtgcgattttgcaccccctc 20968775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 25775533 - 25775574
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  25775533 tcacataattcagtgtaattacaagtgtcggtgtcggacacg 25775574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 3865698 - 3865750
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcca 109  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||| |||||||    
T  3865698 tcacataattcagtataattacaagtgtcggtgtctgacacgacacgtgtcca 3865750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 8587056 - 8587017
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggaca 96  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  8587056 tcacataattaagtgtaattacaagtgtcggtgtcggaca 8587017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 28918025 - 28918078
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtc--ggacacgacaagtgtcc 108  Q
    |||||||||| ||||||||||||||||||||||||  |||||||||| ||||||    
T  28918025 tcacataattcagtgtaattacaagtgtcggtgtcgtggacacgacacgtgtcc 28918078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 40993370 - 40993274
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt------ccaggacacgccttatctgaggagtgtccgtgctttatagg 147  Q
    |||||||||| |||||||||| | |||||||||||||||||||||  |||      || |||||||||| ||| ||||||||||| ||||| |||||    
T  40993370 tcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatagg 40993274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 51206388 - 51206348
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacac 97  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  51206388 tcacataattcagtgtaaatacaagtgtcggtgtcggacac 51206348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 1509563 - 1509598
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||||| |||||||||||||||||||||||||    
T  1509563 tcacataatttagtgtaattacaagtgtcggtgtcg 1509598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 108
Target Start/End: Original strand, 7171537 - 7171576
Alignment:
Q  69 gtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  7171537 gtgtaattacaagtgttggtgtcggacacgacacgtgtcc 7171576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 8593161 - 8593200
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggaca 96  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  8593161 tcacataattcagtataattacaagtgtcggtgtcggaca 8593200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 16000049 - 16000010
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  16000049 acataattcagtgtaactacaagtgtcggtgtcggacacg 16000010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 587
Target Start/End: Complemental strand, 18875225 - 18875155
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttt 587  Q
    |||||||||||| ||||||| |||||||||||||||||         ||||||||||||||||||| ||||    
T  18875225 ccctatcttttgctaattgtacgattttgcaccccctctttttttttgagcgattttgcaccccatctttt 18875155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 27505270 - 27505305
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||||| |||||||||||||||||||||||||    
T  27505270 tcacataattaagtgtaattacaagtgtcggtgtcg 27505305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 552
Target Start/End: Complemental strand, 47871156 - 47871121
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccc 552  Q
    |||||||||||| |||||||||||||||||||||||    
T  47871156 ccctatcttttgctaattgtgcgattttgcaccccc 47871121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 15544768 - 15544798
Alignment:
Q  111 gacacgccttatctgaggagtgtccgtgctt 141  Q
    |||||||||||||||||||||||||||||||    
T  15544768 gacacgccttatctgaggagtgtccgtgctt 15544798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 26492234 - 26492196
Alignment:
Q  63 aattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  26492234 aattcagtgtaattacaagtatcggtgtcggacacgaca 26492196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 550
Target Start/End: Original strand, 4947279 - 4947312
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccc 550  Q
    |||||| |||||||||||||||||||||||||||    
T  4947279 ccctattttttgttaattgtgcgattttgcaccc 4947312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 7928474 - 7928515
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||||| |||||||||| | ||||||||||||||||||    
T  7928474 tcacataattcagtgtaattatatgtgtcggtgtcggacacg 7928515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 8383285 - 8383322
Alignment:
Q  61 ataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  8383285 ataattcagtgtaattataagtgtcggtgtcggacacg 8383322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 551
Target Start/End: Original strand, 9026756 - 9026789
Alignment:
Q  518 cctatcttttgttaattgtgcgattttgcacccc 551  Q
    ||||||||||||||||||||| ||||||||||||    
T  9026756 cctatcttttgttaattgtgcaattttgcacccc 9026789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 551
Target Start/End: Complemental strand, 14015997 - 14015964
Alignment:
Q  518 cctatcttttgttaattgtgcgattttgcacccc 551  Q
    ||||||||||| ||||||||||||||||||||||    
T  14015997 cctatcttttgctaattgtgcgattttgcacccc 14015964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 548
Target Start/End: Complemental strand, 17441095 - 17441066
Alignment:
Q  519 ctatcttttgttaattgtgcgattttgcac 548  Q
    ||||||||||||||||||||||||||||||    
T  17441095 ctatcttttgttaattgtgcgattttgcac 17441066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 550
Target Start/End: Original strand, 18874902 - 18874935
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccc 550  Q
    |||||||||||| |||||||||||||||||||||    
T  18874902 ccctatcttttgctaattgtgcgattttgcaccc 18874935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 35994773 - 35994733
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||||| |||||||||||||||||| ||||||||||||    
T  35994773 tcacataattcagtgtaattacaagtgtc-gtgtcggacacg 35994733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 8789585 - 8789541
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    ||||||||||  ||||||||| | |||||||||||||||||||||    
T  8789585 tcacataattccgtgtaattatatgtgtcggtgtcggacacgaca 8789541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 10268521 - 10268481
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacac 97  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  10268521 tcacataatttagtgtaattacaagtgtcagtgtcagacac 10268481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 10335321 - 10335277
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    ||||||| || ||||||| |||||||||||||||||| |||||||    
T  10335321 tcacatattttagtgtaaatacaagtgtcggtgtcgggcacgaca 10335277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 11610592 - 11610628
Alignment:
Q  110 ggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  11610592 ggacacgcctaatctgaggagtgtccgtgcttcatag 11610628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 553
Target Start/End: Original strand, 17372318 - 17372354
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccct 553  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  17372318 ccctattttttgctaattgtgcgattttgcaccccct 17372354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 26508134 - 26508166
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtg 89  Q
    |||||||||| ||||||||||||||||||||||    
T  26508134 tcacataattcagtgtaattacaagtgtcggtg 26508166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 21191091 - 21191001
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtg------tccaggacacgccttatctgaggagtgtccgtgctt 141  Q
    |||||||||| |||||||||||||||||||||||||||||| ||| |||      ||| |||||||||| ||| |||||||||||||||||    
T  21191091 tcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgctt 21191001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 21576780 - 21576685
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtc---ca---ggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||||||||| ||||||||||||||||||| |||||||||||||| |||||   ||   |||||||||| ||| ||||||||||||||||| ||||    
T  21576780 tcacataattcagtgtaattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 43564905 - 43565001
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt------ccaggacacgccttatctgaggagtgtccgtgctttatagg 147  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| ||||      || |||||||||| ||| ||| ||||||||||||| |||||    
T  43564905 tcacataatttagtgtaattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcatagg 43565001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 15884012 - 15884056
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  15884012 tcacataattcagtgtaattacaagtgtcggtgtcggacacgaca 15884056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 594
Target Start/End: Original strand, 18433035 - 18433112
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    |||||||||||| |||||||||||||||||||||| ||         ||||||||||||||||||| |||||||||||    
T  18433035 ccctatcttttgctaattgtgcgattttgcaccccatctttttttttgagcgattttgcaccccatctttttgccccc 18433112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 6247646 - 6247687
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  6247646 tcacataattcagtgtaattacaagtgtcggtgtcggacacg 6247687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 18433350 - 18433313
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18433350 ccctatcttttgttaattgtgcgattttgcaccccctc 18433313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 25175185 - 25175148
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25175185 ccctatcttttgttaattgtgcgattttgcaccccctc 25175148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 33178049 - 33178089
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacac 97  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  33178049 tcacataatttagtgtaattacaagtgtcggtgtcggacac 33178089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 42893384 - 42893479
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt------ccaggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||||||||  |||||||||||||||||||||||| ||||| ||| ||||      ||||||||||||| || |||||||||||| ||||| ||||    
T  42893384 tcacataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacaccaggacacgcctaatatgaggagtgtccatgcttcatag 42893479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 24906334 - 24906252
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtccaggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||||||| ||||||||||||||||||||| ||||||| |||||      ||||||||||| ||  ||||||||||||||||| ||||    
T  24906334 acataattcagtgtaattacaagtgtcggtatcggacatgacaa-----taggacacgcctaattcgaggagtgtccgtgcttcatag 24906252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 517 - 552
Target Start/End: Complemental strand, 25116095 - 25116060
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccc 552  Q
    ||||||||||||||||||||||||||||||||||||    
T  25116095 ccctatcttttgttaattgtgcgattttgcaccccc 25116060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 517 - 594
Target Start/End: Original strand, 26020470 - 26020547
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    |||||||||||| |||||||||||||||||||||| ||         ||||||||||||||| ||| |||||||||||    
T  26020470 ccctatcttttgctaattgtgcgattttgcaccccatctttttttttgagcgattttgcaccgcatctttttgccccc 26020547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 550
Target Start/End: Original strand, 41382912 - 41382945
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccc 550  Q
    ||||||||||||||||||||||||||||||||||    
T  41382912 ccctatcttttgttaattgtgcgattttgcaccc 41382945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 28588709 - 28588665
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| |||||||||| | |||||||||||||||||||||    
T  28588709 tcacataattcagtgtaattataggtgtcggtgtcggacacgaca 28588665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 564 - 594
Target Start/End: Complemental strand, 12441299 - 12441269
Alignment:
Q  564 gagcgattttgcaccccatatttttgccccc 594  Q
    |||||||||||||||||||||||||||||||    
T  12441299 gagcgattttgcaccccatatttttgccccc 12441269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 21351940 - 21351906
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtc 91  Q
    |||||||||| ||||||||||||||||||||||||    
T  21351940 tcacataattcagtgtaattacaagtgtcggtgtc 21351906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 551
Target Start/End: Original strand, 22428953 - 22428987
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcacccc 551  Q
    |||||||||||| ||||||||||||||||||||||    
T  22428953 ccctatcttttgctaattgtgcgattttgcacccc 22428987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 551
Target Start/End: Complemental strand, 22429230 - 22429196
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcacccc 551  Q
    |||||||||||| ||||||||||||||||||||||    
T  22429230 ccctatcttttgctaattgtgcgattttgcacccc 22429196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 520 - 550
Target Start/End: Complemental strand, 23011413 - 23011383
Alignment:
Q  520 tatcttttgttaattgtgcgattttgcaccc 550  Q
    |||||||||||||||||||||||||||||||    
T  23011413 tatcttttgttaattgtgcgattttgcaccc 23011383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 553
Target Start/End: Complemental strand, 5187861 - 5187828
Alignment:
Q  520 tatcttttgttaattgtgcgattttgcaccccct 553  Q
    ||||||||||||||||||| ||||||||||||||    
T  5187861 tatcttttgttaattgtgcaattttgcaccccct 5187828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 21542056 - 21542089
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||| |||||||||||||||||||||||||    
T  21542056 acataattcagtgtaattacaagtgtcggtgtcg 21542089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 33324872 - 33324835
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  33324872 ccctatcttttgtcaattgtgtgattttgcaccccctc 33324835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 6770567 - 6770656
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtccagg-acacgccttatctgaggagtgtccgtgctttatagg 147  Q
    |||||||||| |||||| |||   ||||| |||||||||||||||  ||||| || |||||||| ||| || |||||||||||||| |||||    
T  6770567 tcacataattcagtgtacttat--gtgtcagtgtcggacacgacacatgtcctggtacacgcctaatccgaagagtgtccgtgcttcatagg 6770656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 8420053 - 8420089
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggac 95  Q
    |||||||| | ||||||||||||||||||||||||||    
T  8420053 acataattcaatgtaattacaagtgtcggtgtcggac 8420089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 27932261 - 27932309
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtc 107  Q
    |||||||| ||||||||||||| | | |||||||||||||||| |||||    
T  27932261 acataattcagtgtaattacaaatcttggtgtcggacacgacacgtgtc 27932309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 30502423 - 30502379
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||| ||||| |||||||||| | |||||||||||||||||||||    
T  30502423 tcacttaattcagtgtaattatatgtgtcggtgtcggacacgaca 30502379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 30542766 - 30542722
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||| ||||| |||||||||| | |||||||||||||||||||||    
T  30542766 tcacttaattcagtgtaattatatgtgtcggtgtcggacacgaca 30542722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 549
Target Start/End: Original strand, 31569926 - 31569958
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcacc 549  Q
    ||||||||||||| |||||||||||||||||||    
T  31569926 ccctatcttttgtcaattgtgcgattttgcacc 31569958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 40000528 - 40000492
Alignment:
Q  111 gacacgccttatctgaggagtgtccgtgctttatagg 147  Q
    |||||| |||||||||||||||||||||||| |||||    
T  40000528 gacacgtcttatctgaggagtgtccgtgcttcatagg 40000492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 517 - 594
Target Start/End: Complemental strand, 6731 - 6654
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    |||||||||||| |||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||    
T  6731 ccctatcttttgctaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccc 6654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 6414 - 6451
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||| |||||||||||||||||||||||||    
T  6414 ccctatcttttgctaattgtgcgattttgcaccccctc 6451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 48)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 517 - 594
Target Start/End: Original strand, 43245891 - 43245968
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    |||||||||||| |||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||    
T  43245891 ccctatcttttgataattgtgcgattttgcaccccctcttttttattgagcgattttgcaccccatctttttgccccc 43245968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 25566814 - 25566900
Alignment:
Q  5 acagacaccggacatgactcggacagtgacacagttaataatttgnnnnnnntcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||||||||||||| | |||| |||||||| ||||||||||       |||||||||| |||||||||||||||||||||||||    
T  25566814 acagacaccggacatgacacagacactgacacagctaataatttgaaaaaa-tcacataattcagtgtaattacaagtgtcggtgtcg 25566900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 20873093 - 20873144
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||| |||||||||||||||||||||||||||||||| | ||||||    
T  20873093 tcacataatttagtgtaattacaagtgtcggtgtcggacacgatacgtgtcc 20873144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 40332215 - 40332266
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||| ||||||||||||||||||||||| |||||||||| ||||||    
T  40332215 tcacataattcagtgtaattacaagtgtcggtgtgggacacgacacgtgtcc 40332266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 594
Target Start/End: Original strand, 765754 - 765831
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    ||||||||||||  ||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||    
T  765754 ccctatcttttgccaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccc 765831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 4948676 - 4948718
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacga 99  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  4948676 tcacataattcagtgtaattacaagtgtcggtgtcggacacga 4948718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 594
Target Start/End: Complemental strand, 15156219 - 15156142
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    ||||||||||||| ||||||||||||||||||||||||          |||||||||||||||||| |||||||||||    
T  15156219 ccctatcttttgtcaattgtgcgattttgcaccccctcttttttttttagcgattttgcaccccatctttttgccccc 15156142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 587
Target Start/End: Complemental strand, 37752450 - 37752381
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttt 587  Q
    ||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||    
T  37752450 ccctatcttttgttaattgtgcgattttgcaccccctc-ttttttttgagcgattttgcaccccatatttt 37752381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 594
Target Start/End: Complemental strand, 41662437 - 41662360
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    ||||||||||||  ||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||    
T  41662437 ccctatcttttgccaattgtgcgattttgcaccccctcttttttattgagcgattttgcaccccatctttttgccccc 41662360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 9465908 - 9465871
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9465908 ccctatcttttgttaattgtgcgattttgcaccccctc 9465871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 15155903 - 15155940
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15155903 ccctatcttttgttaattgtgcgattttgcaccccctc 15155940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 18020122 - 18020085
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18020122 ccctatcttttgttaattgtgcgattttgcaccccctc 18020085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 18407743 - 18407839
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc------aggacacgccttatctgaggagtgtccgtgctttatagg 147  Q
    |||||||||| ||||||||||||||||||| || |||||||||||  |||||      ||||||||||| ||  ||||||||||||||||| |||||    
T  18407743 tcacataattcagtgtaattacaagtgtcgctgccggacacgacacatgtccgacactaggacacgcctaattggaggagtgtccgtgcttcatagg 18407839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 24613544 - 24613585
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  24613544 tcacataattaagtgtaattacaagtgtcggtgtcggacacg 24613585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 34313783 - 34313820
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34313783 ccctatcttttgttaattgtgcgattttgcaccccctc 34313820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 36450789 - 36450694
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt------ccaggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||  ||||      ||||||||||||| ||| |||||||||| |||||| ||||    
T  36450789 tcacagaattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 5813616 - 5813667
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    ||||||| || ||||||| |||||||||||||||||||||||||| ||||||    
T  5813616 tcacatattttagtgtaaatacaagtgtcggtgtcggacacgacacgtgtcc 5813667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 520 - 554
Target Start/End: Complemental strand, 12281457 - 12281423
Alignment:
Q  520 tatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||||||||||||||||||||||||||    
T  12281457 tatcttttgttaattgtgcgattttgcaccccctc 12281423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 520 - 554
Target Start/End: Original strand, 41662130 - 41662164
Alignment:
Q  520 tatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||||||||||||||||||||||||||    
T  41662130 tatcttttgttaattgtgcgattttgcaccccctc 41662164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 16928962 - 16928999
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||| |||||||||||||||||||||||||    
T  16928962 ccctatcttttgctaattgtgcgattttgcaccccctc 16928999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 16929276 - 16929239
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||| |||||||||||||||||||||||||    
T  16929276 ccctatcttttgctaattgtgcgattttgcaccccctc 16929239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 22596020 - 22596069
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||| ||||||||||||||||| |||||||||| ||||| ||||||    
T  22596020 acataattcagtgtaattacaagtgttggtgtcggacgcgacacgtgtcc 22596069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 519 - 594
Target Start/End: Complemental strand, 75016 - 74942
Alignment:
Q  519 ctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    |||||||||| |||||||||||||||||||||||||          |||||||||||||||||| |||||||||||    
T  75016 ctatcttttgctaattgtgcgattttgcaccccctcttttttttt-agcgattttgcaccccatctttttgccccc 74942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 13844631 - 13844591
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacac 97  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  13844631 tcacataattgagtgtaattatatgtgtcggtgtcggacac 13844591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 26902140 - 26902104
Alignment:
Q  110 ggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||||||||||||||||||||||||||||||| ||||    
T  26902140 ggacacgccttatctgaggagtgtccgtgcttcatag 26902104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 31557020 - 31557064
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||    
T  31557020 tcacataattcagtgtaattacaagtttcggtgtcagacacgaca 31557064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 2572091 - 2572056
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||||| |||||||||||||||||||||||||    
T  2572091 tcacataatttagtgtaattacaagtgtcggtgtcg 2572056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 8342996 - 8343031
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||||| |||||||||||||||||||||||||    
T  8342996 tcacataatttagtgtaattacaagtgtcggtgtcg 8343031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 15023288 - 15023241
Alignment:
Q  61 ataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||| ||||||||||||||||||| ||||||| |||||| ||||||    
T  15023288 ataattcagtgtaattacaagtgtcgatgtcggatacgacacgtgtcc 15023241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 33405418 - 33405375
Alignment:
Q  58 cacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    ||||||||| |||||||||| | |||||||||||||||||||||    
T  33405418 cacataatttagtgtaattatatgtgtcggtgtcggacacgaca 33405375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 3025575 - 3025625
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtc 107  Q
    |||||||||| |||||||||| | ||||| ||||||||||||||| |||||    
T  3025575 tcacataattcagtgtaattataggtgtcagtgtcggacacgacacgtgtc 3025625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 551
Target Start/End: Original strand, 3463660 - 3463694
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcacccc 551  Q
    |||||||||||||||||||||| ||||||||||||    
T  3463660 ccctatcttttgttaattgtgcaattttgcacccc 3463694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 22197704 - 22197670
Alignment:
Q  113 cacgccttatctgaggagtgtccgtgctttatagg 147  Q
    ||||||| |||||||||||||||||||||||||||    
T  22197704 cacgcctaatctgaggagtgtccgtgctttatagg 22197670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 551
Target Start/End: Original strand, 22851410 - 22851444
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcacccc 551  Q
    ||||||||||||| |||||||||||||||||||||    
T  22851410 ccctatcttttgtcaattgtgcgattttgcacccc 22851444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 520 - 554
Target Start/End: Complemental strand, 23123548 - 23123514
Alignment:
Q  520 tatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||| |||||||||||||||||||||||||    
T  23123548 tatcttttgctaattgtgcgattttgcaccccctc 23123514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 98
Target Start/End: Complemental strand, 30271279 - 30271249
Alignment:
Q  68 agtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||||||||||||||||||||||||||    
T  30271279 agtgtaattacaagtgtcggtgtcggacacg 30271249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 4786373 - 4786324
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt 106  Q
    |||||||||| |||||||||| | |||||||||||||| |||||| ||||    
T  4786373 tcacataattcagtgtaattatatgtgtcggtgtcggatacgacatgtgt 4786324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 8343340 - 8343381
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||||| |||||||||||||||||| |||||| |||||    
T  8343340 tcacataatttagtgtaattacaagtgtcagtgtcgtacacg 8343381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 553
Target Start/End: Complemental strand, 9930870 - 9930837
Alignment:
Q  520 tatcttttgttaattgtgcgattttgcaccccct 553  Q
    ||||||||||||||||||||||||||||| ||||    
T  9930870 tatcttttgttaattgtgcgattttgcactccct 9930837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 24669459 - 24669492
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||| |||||||||||||||||||||||||    
T  24669459 acataattcagtgtaattacaagtgtcggtgtcg 24669492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 30077422 - 30077385
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcgga 94  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  30077422 tcacataattcagtgtaattacaagtgtccgtgtcgga 30077385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 43162253 - 43162290
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  43162253 ccctatattttgttaattgtgcgattttgcacctcctc 43162290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 43162573 - 43162536
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  43162573 ccctatcttttgtcaatcgtgcgattttgcaccccctc 43162536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 43246210 - 43246173
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  43246210 ccctatcttttgctaattgtgtgattttgcaccccctc 43246173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 550
Target Start/End: Complemental strand, 43598789 - 43598756
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccc 550  Q
    |||||||||||| |||||||||||||||||||||    
T  43598789 ccctatcttttgctaattgtgcgattttgcaccc 43598756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 926812 - 926772
Alignment:
Q  68 agtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||| ||||||||||||||||| ||||| ||||||    
T  926812 agtgtaattataagtgtcggtgtcggacgcgacacgtgtcc 926772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 553
Target Start/End: Original strand, 7127672 - 7127708
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccct 553  Q
    |||||||||||| |||||||||||||||||| |||||    
T  7127672 ccctatcttttgctaattgtgcgattttgcatcccct 7127708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 31580162 - 31580118
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    ||||||||||||||||||||| | |||||| |||||||| |||||    
T  31580162 tcacataattgagtgtaattataggtgtcgatgtcggacgcgaca 31580118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 21880178 - 21880271
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgt------ccaggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||||||| ||||||||||||||||||||||||||||||||||  |||      ||||||||||||| ||| ||| ||||||||||||| ||||    
T  21880178 acataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcatag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 15680833 - 15680884
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| ||||||    
T  15680833 tcacataatttagtgtaattataagtgtcggtgtcggacacgacacgtgtcc 15680884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 594
Target Start/End: Complemental strand, 9412359 - 9412282
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    ||||||||||||  ||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||    
T  9412359 ccctatcttttgccaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccc 9412282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 3687374 - 3687411
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3687374 ccctatcttttgttaattgtgcgattttgcaccccctc 3687411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 21864836 - 21864883
Alignment:
Q  61 ataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||    
T  21864836 ataatttagtgtaattacaagtgtcgctgtcggacacgacacgtgtcc 21864883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 25481926 - 25481977
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||| ||||||||||||||||| |||||||||||||| | ||||||    
T  25481926 tcacataattcagtgtaattacaagtgttggtgtcggacacgatatgtgtcc 25481977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 517 - 551
Target Start/End: Complemental strand, 5349767 - 5349733
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcacccc 551  Q
    |||||||||||||||||||||||||||||||||||    
T  5349767 ccctatcttttgttaattgtgcgattttgcacccc 5349733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 520 - 554
Target Start/End: Original strand, 9412046 - 9412080
Alignment:
Q  520 tatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||||||||||||||||||||||||||    
T  9412046 tatcttttgttaattgtgcgattttgcaccccctc 9412080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 594
Target Start/End: Complemental strand, 3687690 - 3687614
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    ||||||||||||  ||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||    
T  3687690 ccctatcttttgccaattgtgcgattttgcaccccctc-ttttttttgagcgattttgcaccccatctttttgccccc 3687614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 8953923 - 8953886
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||||||||||||| |||||||||||||||    
T  8953923 ccctatcttttgttaattgtgcaattttgcaccccctc 8953886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 33994236 - 33994280
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||||| |||| ||||||||||||||||||| |||||||||    
T  33994236 tcacataattcagtgcaattacaagtgtcggtgtcagacacgaca 33994280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 2334274 - 2334309
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||||| |||||||||||||||||||||||||    
T  2334274 tcacataatttagtgtaattacaagtgtcggtgtcg 2334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 9408369 - 9408334
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||||| |||||||||||||||||||||||||    
T  9408369 tcacataatttagtgtaattacaagtgtcggtgtcg 9408334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 18039023 - 18039058
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||||| |||||||||||||||||||||||||    
T  18039023 tcacataattcagtgtaattacaagtgtcggtgtcg 18039058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 18213068 - 18213025
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgac 100  Q
    |||||||||| |||||||||| | ||||||||||||||||||||    
T  18213068 tcacataatttagtgtaattatatgtgtcggtgtcggacacgac 18213025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 19213827 - 19213870
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgac 100  Q
    |||||||||  ||||||| |||||||||||||||||||||||||    
T  19213827 tcacataatgcagtgtaaatacaagtgtcggtgtcggacacgac 19213870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 21560527 - 21560562
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||||| |||||||||||||||||||||||||    
T  21560527 tcacataattcagtgtaattacaagtgtcggtgtcg 21560562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 24339666 - 24339701
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||||| |||||||||||||||||||||||||    
T  24339666 tcacataattcagtgtaattacaagtgtcggtgtcg 24339701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 551
Target Start/End: Complemental strand, 35080254 - 35080223
Alignment:
Q  520 tatcttttgttaattgtgcgattttgcacccc 551  Q
    ||||||||||||||||||||||||||||||||    
T  35080254 tatcttttgttaattgtgcgattttgcacccc 35080223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 523 - 553
Target Start/End: Original strand, 5349489 - 5349519
Alignment:
Q  523 cttttgttaattgtgcgattttgcaccccct 553  Q
    |||||||||||||||||||||||||||||||    
T  5349489 cttttgttaattgtgcgattttgcaccccct 5349519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 8234172 - 8234214
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacgaca 101  Q
    |||||||| |||||| ||||||||| |||||||||||||||||    
T  8234172 acataattcagtgtagttacaagtgccggtgtcggacacgaca 8234214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 28155596 - 28155634
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacac 97  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  28155596 acataattcggtgtaattacaagtgtcggtgtcggacac 28155634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 550
Target Start/End: Original strand, 6908232 - 6908265
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccc 550  Q
    |||||||| |||||||||||||||||||||||||    
T  6908232 ccctatctattgttaattgtgcgattttgcaccc 6908265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 11061111 - 11061070
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacg 98  Q
    |||||||||| ||| |||||||||||||||||||| ||||||    
T  11061111 tcacataatttagtataattacaagtgtcggtgtcagacacg 11061070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 13772935 - 13772898
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  13772935 ccctatcatttgctaattgtgcgattttgcaccccctc 13772898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 27945067 - 27945100
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcg 92  Q
    |||||||| |||||||||||||||||||||||||    
T  27945067 acataattcagtgtaattacaagtgtcggtgtcg 27945100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 29291826 - 29291863
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  29291826 ccctatcttttgataattatgcgattttgcaccccctc 29291863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 552
Target Start/End: Complemental strand, 34236010 - 34235977
Alignment:
Q  519 ctatcttttgttaattgtgcgattttgcaccccc 552  Q
    |||||||||| |||||||||||||||||||||||    
T  34236010 ctatcttttgctaattgtgcgattttgcaccccc 34235977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 550
Target Start/End: Complemental strand, 38191599 - 38191566
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccc 550  Q
    |||||||||||||||||| |||||||||||||||    
T  38191599 ccctatcttttgttaattatgcgattttgcaccc 38191566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 25956471 - 25956511
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacga 99  Q
    |||||||| | |||||| |||||||||||||||||||||||    
T  25956471 acataattcaatgtaatcacaagtgtcggtgtcggacacga 25956511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 517 - 593
Target Start/End: Complemental strand, 25403 - 25327
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgcccc 593  Q
    |||||||||||| |||||||||||||||||||||||||         ||||||||||||||||||| ||||||||||    
T  25403 ccctatcttttgctaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgcccc 25327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 45563 - 45515
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtc 107  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||    
T  45563 acataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtc 45515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 594
Target Start/End: Complemental strand, 1454 - 1377
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    ||||||||||||  ||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||    
T  1454 ccctatcttttgccaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccc 1377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 1138 - 1175
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1138 ccctatcttttgttaattgtgcgattttgcaccccctc 1175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 594
Target Start/End: Complemental strand, 45841 - 45764
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccatatttttgccccc 594  Q
    ||||||||||||  ||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||    
T  45841 ccctatcttttgccaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccc 45764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 45556 - 45593
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||||||||||||||||||||||| |||||    
T  45556 ccctatcttttgttaattgtgcgattttgcactccctc 45593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 8833 - 8917
Alignment:
Q  68 agtgtaattacaagtgtcggtgtcggacacgacaagtgt------ccaggacacgccttatctgaggagtgtccgtgctttatag 146  Q
    |||||||||||||||||||||||||||||||||| ||||      ||  ||||||||| ||||||||||| ||||||||| ||||    
T  8833 agtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttcatag 8917  T

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Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 70304 - 70353
Alignment:
Q  59 acataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||    
T  70304 acataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtcc 70353  T

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Target: scaffold0652 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 497 - 454
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgac 100  Q
    ||||| |||| |||||||||||||||||||||||||||||||||    
T  497 tcacaaaattcagtgtaattacaagtgtcggtgtcggacacgac 454  T

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Target: scaffold0512 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 5058 - 5020
Alignment:
Q  70 tgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  5058 tgtaattacaagtgtcggtgtcggacacgacacgtgtcc 5020  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 517 - 582
Target Start/End: Original strand, 438950 - 439015
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctcnnnnnnnnngagcgattttgcaccccat 582  Q
    |||||||||||| |||||||||||||||||||||||||         |||||||||||||||||||    
T  438950 ccctatcttttgctaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccat 439015  T

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Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 23771 - 23829
Alignment:
Q  34 cacagttaataatttgnnnnnnntcacataattgagtgtaattacaagtgtcggtgtcg 92  Q
    ||||||||||||||||       |||||||||| |||||||||||||||||||||||||    
T  23771 cacagttaataatttgaaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 23829  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 205706 - 205743
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||| |||||||||||||||||||||||||    
T  205706 ccctatcttttgctaattgtgcgattttgcaccccctc 205743  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 411942 - 411979
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  411942 ccctatcttttgtcaattgtgcgattttgcaccccctc 411979  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 17784 - 17750
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtc 91  Q
    |||||||||| ||||||||||||||||||||||||    
T  17784 tcacataatttagtgtaattacaagtgtcggtgtc 17750  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 123652 - 123686
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtc 91  Q
    |||||||||| ||||||||||||||||||||||||    
T  123652 tcacataattcagtgtaattacaagtgtcggtgtc 123686  T

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Target: scaffold1221 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1221
Description:

Target: scaffold1221; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 1818 - 1781
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  1818 ccctatcttttgtttattgtgcgattttgcacctcctc 1781  T

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Target: scaffold0376 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 7634 - 7597
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  7634 ccctatcttttgctaattgtgcgattttgtaccccctc 7597  T

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Target: scaffold0361 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 14554 - 14602
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtgtcggacacgacaagtgtcc 108  Q
    |||||||||| |||||||||||||||   |||||||||||||||| ||||||    
T  14554 tcacataattcagtgtaattacaagt---ggtgtcggacacgacacgtgtcc 14602  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 16871 - 16908
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcaccccctc 554  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  16871 ccctatcttttgctaattgtgcgattatgcaccccctc 16908  T

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Target: scaffold0598 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 549
Target Start/End: Original strand, 6627 - 6659
Alignment:
Q  517 ccctatcttttgttaattgtgcgattttgcacc 549  Q
    ||||||||||||||||||||| |||||||||||    
T  6627 ccctatcttttgttaattgtgtgattttgcacc 6659  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 130506 - 130538
Alignment:
Q  57 tcacataattgagtgtaattacaagtgtcggtg 89  Q
    |||||||||| ||||||||||||||||||||||    
T  130506 tcacataattcagtgtaattacaagtgtcggtg 130538  T

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