View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110-Insertion-13 (Length: 525)
Name: NF5110-Insertion-13
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110-Insertion-13 |
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Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 8 - 517
Target Start/End: Complemental strand, 43843387 - 43842878
Alignment:
| Q |
8 |
acaacatcaatgatttttggttcttgtgaatagattaatgcaggtgctgtaatgctgacagattgtgcattttggttcataattgttccttttctaacca |
107 |
Q |
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| T |
43843387 |
acaacatcaatgatttttggttcttgtgaatagattaatgcaggtgctgtaatgctgacagattgtgcattttggttcataattgttccttttctaacca |
43843288 |
T |
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| Q |
108 |
tcaaagattacaacataaatttagtaagtactactatcatttacttattgtctaatggatattttatgtctttttcttaataactttgacttagataagt |
207 |
Q |
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| T |
43843287 |
tcaaagattacaacataaatttagtaagtactgctatcatttacttattgtctcatggatattttatgtctttttcttaataactttgacttagataagt |
43843188 |
T |
|
| Q |
208 |
tatattctatgcttgttttaataatcagtgttatgtggcagctgaccataagtatgcatacaatcaatgctgttttcctgctaggagatacagctttaaa |
307 |
Q |
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| T |
43843187 |
tatattctatgcttgttttaataatcagtgttatgtggcagctgaccataagtatgcatacaatcaatgctgttttcctgctaggagatacagctttaaa |
43843088 |
T |
|
| Q |
308 |
ttgcctggtgagtttatatatgtgattattattacattgaattgtatacttccatgcatatgtgaattcttacccttgtttannnnnnnncctctttaga |
407 |
Q |
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| T |
43843087 |
ttgcctggtgagtttatatatgtgattattattacattgaattgtatacttccatgcatatgtgaattcttacccttgtttattttttttcctctttaga |
43842988 |
T |
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| Q |
408 |
ggttcccttggtttcgaataggatacttttgcctgtggacagttacatatgtcattttccaatggattgttcatgctatggttaaaatctggtaatgata |
507 |
Q |
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| T |
43842987 |
ggttcccttggtttcgaataggatacttttgcctgtggacagttacatatgtcattttccaatggattgttcatgctatggttaaaatctggtaatgata |
43842888 |
T |
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| Q |
508 |
ttaataactc |
517 |
Q |
| |
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| T |
43842887 |
ttaataactc |
43842878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 34893355 - 34893248
Alignment:
| Q |
30 |
cttgtgaatagattaatgcaggtgctgtaatgctgacagattgtgcattttggttcataattgttccttttctaaccatcaaagattacaacataaattt |
129 |
Q |
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||||||||||||| ||||||||||||| | |||| || ||||||| ||||||||| || ||||||| ||||||||||||||||||||||| |||| || |
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| T |
34893355 |
cttgtgaatagataaatgcaggtgctgcattgctcactgattgtgtattttggtttgtatttgttccatttctaaccatcaaagattacaatctaaactt |
34893256 |
T |
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| Q |
130 |
agtaagta |
137 |
Q |
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| T |
34893255 |
tgtaagta |
34893248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 410 - 484
Target Start/End: Complemental strand, 34892978 - 34892904
Alignment:
| Q |
410 |
ttcccttggtttcgaataggatacttttgcctgtggacagttacatatgtcattttccaatggattgttcatgct |
484 |
Q |
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| T |
34892978 |
ttcccttggtttcgaatgggatacttttgcttatggacagtcgcatatgtgattttccaatggattgttcatgct |
34892904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 34893119 - 34893066
Alignment:
| Q |
268 |
caatcaatgctgttttcctgctaggagatacagctttaaattgcctggtgagtt |
321 |
Q |
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| T |
34893119 |
caatcaatgctattttcctcataggtgatacagctttaaattgcctggtgagtt |
34893066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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