View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110-Insertion-15 (Length: 456)

Name: NF5110-Insertion-15
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110-Insertion-15
NF5110-Insertion-15
[»] chr5 (1 HSPs)
chr5 (26-456)||(27977335-27977763)


Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 26 - 456
Target Start/End: Complemental strand, 27977763 - 27977335
Alignment:
Q  26 catttgctttctgaatatatgaacacattaaacacmaatacatggattttaaagattcaagaattatagaagaaaatccaaccttgaaattagaaatacc 125  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27977763 catttgctttctgaatatatgaacacattaaacacaaatacatggattttaaagatgcaagaattatagaagaaaatccaaccttgaaattagaaatacc 27977664  T
Q  126 ataataacattcatgttctatatattgkcacacaatcmcmctacaatataaccttaacaatttttcaagtactcaaataaaggaaatcaaatttgctctc 225  Q
    ||||||||||||||||||||||||||| ||||||||| | |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27977663 ataataacattcatgttctatatattgtcacacaatcacactacaatat--ccttaacaattttccaagtactcaaataaaggaaatcaaatttgctctc 27977566  T
Q  226 tctctattggagctggtgtttgctcattgatactattttgtttagacagtgtaggattgacacatgaaaacagtgattgatactgcttttgtctctttaa 325  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27977565 tctctattggagctggtacttgctcattgatactattttgtttagacagtgtaggattgacacatgaaaacagtgattgatactgcttttgtctctttaa 27977466  T
Q  326 cttgacaccaaacaagatagacctcaaaggtattctattaccttttgtgttcttttttgtctctctatgaacactactaatcccaatagcttgatcaagt 425  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  27977465 cttgacaccaaacaagaaagacctcaaaggtattctattaccttttgtgttcttttttgtctctctatgagcactgctaatcccaatagcttgatcaagt 27977366  T
Q  426 tcatcaagtgkcttctcaacctcatttttca 456  Q
    |||||||||| ||||||||| ||||||||||    
T  27977365 tcatcaagtgtcttctcaacatcatttttca 27977335  T

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