View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5110-Insertion-16 (Length: 442)
Name: NF5110-Insertion-16
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110-Insertion-16 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 23251775 - 23251491
Alignment:
| Q |
8 |
gtttcgtgttgaagtcgaagaagaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgggtatcatgat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23251775 |
gtttcgtgttgaagtcgaagaagaggaagtgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgggtatcatgat |
23251676 |
T |
|
| Q |
108 |
cagtatgaagatattcatatacaagactttcaagatgatgaggtatcactatggaacttttaaatttaattgatttggttttacatttatttttggattg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23251675 |
cagtatgaagatattcatatacaagactttcaagatgatgaggtatcactatggaacttttaaatttaattgatttggttttacatttatttttggattg |
23251576 |
T |
|
| Q |
208 |
tagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaaggaattt |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23251575 |
tagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaaggaattt |
23251491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 8 - 293
Target Start/End: Complemental strand, 23257751 - 23257464
Alignment:
| Q |
8 |
gtttcgtgttgaagtcgaagaagag---gaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgggtatcat |
104 |
Q |
| |
|
|||| |||| ||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
23257751 |
gttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacacatagctttgagtatcat |
23257652 |
T |
|
| Q |
105 |
gatcagtatgaagatattcatatacaagactttcaagatgatgaggtatcactatggaacttttaaatttaattgatttggttttacatttatttttgga |
204 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||| |||||||||||| |
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|
| T |
23257651 |
gatcagtatgaagatattcatgtacaagactttcaagatgatgaggtatcactatggaacttctaaacttaatgtgtttgg-tttaattttatttttgga |
23257553 |
T |
|
| Q |
205 |
ttgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaaggaatttc |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
23257552 |
ttgtagaataggaaatgtctatactacaacctttttaattggtagcataaattctgcatatacataggttgaaattgaaaaggagtttc |
23257464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 24 - 255
Target Start/End: Complemental strand, 23266293 - 23266063
Alignment:
| Q |
24 |
gaagaagaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatattc |
123 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| |
|
|
| T |
23266293 |
gaagaagaggaaatgttgaatatgccggagttttggaggaatatggcactaatgtcccctacacatagctttgagtatcatgatcaatatgaagattttc |
23266194 |
T |
|
| Q |
124 |
atatacaagactttcaagatgatgaggtatcactatggaacttttaaatttaattgatttggttttacatttatttttggattgtagaataggaaatgtc |
223 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
23266193 |
attttcaagactttcaagatgatgaggtatcactatggaacttctaaattttctttgtttggtttaac-tttatttttggattgtagaataggaaatgtc |
23266095 |
T |
|
| Q |
224 |
tatactacaaccgtttgaattggtagcgtaaa |
255 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||| |
|
|
| T |
23266094 |
tatactacaacctttttaattggtagcataaa |
23266063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 30 - 293
Target Start/End: Complemental strand, 23247338 - 23247079
Alignment:
| Q |
30 |
gaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatattcatatac |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| ||||||||| |||||| ||||||||| ||| |
|
|
| T |
23247338 |
gaggaaatgttgaatatgccagagttgtggaggaatatggcgttgatgtcacctacacatagctttgagtatcatga---gtatgacgatattcatgtac |
23247242 |
T |
|
| Q |
130 |
aagactttcaagatgatgaggtatcactatggaacttttaaatttaattgatttggttttacatttatttttggattgtagaataggaaatgtctatact |
229 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||| || ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
23247241 |
aagattttcaagatgatgaggtatcactatggaacttttaaatttaatgtcttttgttt-acttttctttttggattgtaggataggaaatgtctatact |
23247143 |
T |
|
| Q |
230 |
acaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaaggaatttc |
293 |
Q |
| |
|
|||||| ||| |||||||||| |||| ||||||||||||||||| || || |||||||||||| |
|
|
| T |
23247142 |
acaacctttttaattggtagcataaatactgcatatacataggttaaaattaaaaaggaatttc |
23247079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 292 - 442
Target Start/End: Complemental strand, 23251453 - 23251303
Alignment:
| Q |
292 |
tcaagcgtaaagtgcatctcatcctttttattatatatgaaagaaaatataattttggaatttcagctattgatatagaaaatataatctattgccatct |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23251453 |
tcaagcgtaaagtgcatctcatcctttttattatatatgaaagaaaatataattttggaatttcagctattgatatagaaaatataatctattgccatct |
23251354 |
T |
|
| Q |
392 |
ttgcttagcctgtattaagttgaaggaggtaatacggtgtctcttgtctta |
442 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23251353 |
ttgcttagcctgtattaagttgaagaaggtaatacggtgtctcttgtctta |
23251303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 317 - 442
Target Start/End: Complemental strand, 23266001 - 23265873
Alignment:
| Q |
317 |
ttttattatatatgaaagaa-aatataattttggaatttcagctattgatatagaaaatataatctattgccatctttgcttagcctgtat--taagttg |
413 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| || || ||||||| |
|
|
| T |
23266001 |
ttttattatatatgaaagaagaatataactttggaatttcagcttttgatatagaaaatataatctattgccatccttgcttagcttgcattataagttg |
23265902 |
T |
|
| Q |
414 |
aaggaggtaatacggtgtctcttgtctta |
442 |
Q |
| |
|
|| ||||||||| | ||||||||||||| |
|
|
| T |
23265901 |
aaagaggtaatatagcgtctcttgtctta |
23265873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 23283362 - 23283160
Alignment:
| Q |
25 |
aagaagaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatattca |
124 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| | ||| | ||||| ||||||| || || | |
|
|
| T |
23283362 |
aagaagaggaagtgttgaatatgtcagagatgtggaggaatatggcgttaatgtcccctacacatag-tatgg--agcatga---gtatgaaaattttga |
23283269 |
T |
|
| Q |
125 |
tatacaagactttcaagatgatgaggtatcactatggaacttttaaatttaattgatttggttttacatttatttttggattgtagaataggaaatgtct |
224 |
Q |
| |
|
| ||||||||||||||||||| |||||||| ||||||||||| |||| || | ||||||||| ||| ||||||||||||||||| | |||||||| |
|
|
| T |
23283268 |
tttacaagactttcaagatgaagaggtatccctatggaacttctaaaattgaagagtttggttttgtttttttttttggattgtagaattgaaaatgtct |
23283169 |
T |
|
| Q |
225 |
atactacaa |
233 |
Q |
| |
|
||||||||| |
|
|
| T |
23283168 |
atactacaa |
23283160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 23289702 - 23289570
Alignment:
| Q |
25 |
aagaagaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatattca |
124 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| | |||| ||||||||||| || | |
|
|
| T |
23289702 |
aagaagaggaagtgttgaatatgcaagagttgtggaaaaatatggcactaatgtcccctacacatagttttg---agcatg---agtatgaagattttga |
23289609 |
T |
|
| Q |
125 |
tatacaagactttcaagatgatgaggtatcactatggaactt |
166 |
Q |
| |
|
| ||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
23289608 |
tgtacaa---tttcaagatgaagaggtatcgctatggaactt |
23289570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 23391174 - 23391074
Alignment:
| Q |
40 |
tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatattcatatacaagactttca |
139 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||| ||| | |||||| |||||||| | ||||||||||| |
|
|
| T |
23391174 |
tgaacatgccagagttgttgaggaatatggcactaatgtctcctacacatagctctgggtataatg---aatatgaaaatattcatgttcaagactttca |
23391078 |
T |
|
| Q |
140 |
agat |
143 |
Q |
| |
|
|||| |
|
|
| T |
23391077 |
agat |
23391074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 23593082 - 23593015
Alignment:
| Q |
25 |
aagaagaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagc |
92 |
Q |
| |
|
|||| |||||| ||||||| || ||||||| || |||||||||||| ||||||||||||||||||||| |
|
|
| T |
23593082 |
aagaggaggaagtgttgaacattccagagtcgttgaggaatatggctctaatgtcccctacacatagc |
23593015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 23582948 - 23582820
Alignment:
| Q |
40 |
tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatattcatatacaagactttca |
139 |
Q |
| |
|
|||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| |||||| ||| ||||| || ||||| || |||||||||| |
|
|
| T |
23582948 |
tgaacatgcaagagatgtggagtaatatggcgctaatgtctcctacacatagcttggggtattatg---agtatcaatatattaat---gaagactttca |
23582855 |
T |
|
| Q |
140 |
agatgatgaggtatcactatggaacttttaaattt |
174 |
Q |
| |
|
|||||| | ||||||||||||| |||||||||| |
|
|
| T |
23582854 |
agatgaaaaagtatcactatggagtttttaaattt |
23582820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 23586831 - 23586703
Alignment:
| Q |
40 |
tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatattcatatacaagactttca |
139 |
Q |
| |
|
|||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| |||||| ||| ||||| || ||||| || |||||||||| |
|
|
| T |
23586831 |
tgaacatgcaagagatgtggagtaatatggcgctaatgtctcctacacatagcttggggtattatg---agtatcaatatattaat---gaagactttca |
23586738 |
T |
|
| Q |
140 |
agatgatgaggtatcactatggaacttttaaattt |
174 |
Q |
| |
|
|||||| | ||||||||||||| |||||||||| |
|
|
| T |
23586737 |
agatgaaaaagtatcactatggagtttttaaattt |
23586703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 23633905 - 23633835
Alignment:
| Q |
24 |
gaagaagaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctt |
94 |
Q |
| |
|
|||||||||||| |||||| || || |||| | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23633905 |
gaagaagaggaagagttgaacattcctgagtcattgaggaatatggctctaatgtcccctacacatagctt |
23633835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 23506563 - 23506493
Alignment:
| Q |
24 |
gaagaagaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctt |
94 |
Q |
| |
|
|||||||||||| |||||| || || |||| | ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23506563 |
gaagaagaggaagagttgaacattcctgagtcattgaggaatatggttctaatgtcccctacacatagctt |
23506493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 23247032 - 23246979
Alignment:
| Q |
302 |
agtgcatctcatcctttttattatatatgaaagaa-aatataattttggaattt |
354 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
23247032 |
agtgcatctcatgacttttattatatatgaaaaaagaatataattttggaattt |
23246979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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