View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110-Insertion-17 (Length: 441)
Name: NF5110-Insertion-17
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110-Insertion-17 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 441
Target Start/End: Original strand, 30987626 - 30988059
Alignment:
| Q |
8 |
ctaacctctcaaaaacccaacaaccttctcatcactttcgtactcacagaagagtggctcaccttcatcggcgccgatccaaagccagaatccatccgct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30987626 |
ctaacctctcaaaaacccaacaaccttctcatcactttcgtactcacagaagagtggctcaccttcatcggcgccgatccaaagccagaatccatccgct |
30987725 |
T |
|
| Q |
108 |
ttgccaccattcccaacgttatcctgccggagcgggagaaagccggcgattttcctgctttctatgaagctgtcatgacaaagatggaagcaccgtttga |
207 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30987726 |
ttgccaccattcccaacgttatcccgccggagcgggagaaagccggcgattttcctggtttctatgaagctgtcatgacaaagatggaagcaccgtttga |
30987825 |
T |
|
| Q |
208 |
gaagcttcttgatcagcttgagttgccggtggatgtgattgttggtgatgttgaactaagatggccagttgatgttggtaatcggagaaatgttccggtg |
307 |
Q |
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| T |
30987826 |
gaagcttcttgatcagcttgagttgccggtggatgtgattgttggtgatgttgaactaagatggccagttaatgttggtaatcggaggaatgttccggtg |
30987925 |
T |
|
| Q |
308 |
gcggcgttttggactatgtctgcgtcgttttactctatgttgcatcatcttgatgtgttttcacgaaaacatcacctaactgttgataaactgggtaatt |
407 |
Q |
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| T |
30987926 |
gcggcgttttggactatgtctgcgtcgttttactctatgttgcatcatcttgatgtgttttcacgaaaacatcacctaactgttgataaactgggtaatt |
30988025 |
T |
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| Q |
408 |
actcatttgcagaagtagaactatgcttaatata |
441 |
Q |
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| T |
30988026 |
actcatttgcagaagtagaactatgcttaatata |
30988059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 59 - 399
Target Start/End: Original strand, 30993677 - 30994017
Alignment:
| Q |
59 |
gagtggctcaccttcatcggcgccgatccaaagccagaatccatccgctttgccaccattcccaacgttatcctgccggagcgggagaaagccggcgatt |
158 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||| | | ||| |
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| T |
30993677 |
gagtggctcaccattatcggcgccgatccaaagccagaatccatccgcttcaccaccattcctaacgtgatcccaccggagcgggagaaagcagccaatt |
30993776 |
T |
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| Q |
159 |
ttcctgctttctatgaagctgtcatgacaaagatggaagcaccgtttgagaagcttcttgatcagcttgagttgccggtggatgtgattgttggtgatgt |
258 |
Q |
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| T |
30993777 |
ttcctggattatatgaagctgtcatgacgaagatggaagctccttttgagtagcttcttgatcagcttgagtttccggtgaatgtgatcgttggtgatgt |
30993876 |
T |
|
| Q |
259 |
tgaactaagatggccagttgatgttggtaatcggagaaatgttccggtggcggcgttttggactatgtctgcgtcgttttactctatgttgcatcatctt |
358 |
Q |
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||| || ||||||| |||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||| ||||||| || ||||||||||||||| |
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| T |
30993877 |
tgagctgtgatggcctgttgatgttggtcatcagaggaatgttccggtatcggcgttttggactatgtctgcaacgttttattcaatgttgcatcatctt |
30993976 |
T |
|
| Q |
359 |
gatgtgttttcacgaaaacatcacctaactgttgataaact |
399 |
Q |
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|||||||||||| |||| |||||| |||||||||||||||| |
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| T |
30993977 |
gatgtgttttcaagaaaccatcacttaactgttgataaact |
30994017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 405
Target Start/End: Original strand, 30990334 - 30990723
Alignment:
| Q |
19 |
aaaacccaacaaccttctcatcactttcgtactcacagaagagtggctcaccttcatcggcgccgatccaaagccagaatccatccgctttgccaccatt |
118 |
Q |
| |
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||||||||||||| |||| || || || ||| |||| ||||| |||||| ||| |||||| ||||||||||| ||||| |||||| |||||||||| |
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| T |
30990334 |
aaaacccaacaacattcttattacctttgtagtcactgaagaatggctcggctttatcggcagtgatccaaagccgaaatccgtccgctatgccaccatt |
30990433 |
T |
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| Q |
119 |
cccaacgttatcctgccggagcgggagaaagccggcgat---tttcctgctttctatgaagctgtcatgacaaagatggaagcaccgtttgagaagcttc |
215 |
Q |
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| T |
30990434 |
cctaacgtggttccaccggagcgtgagaaaacaattgatagttttcctcagttttatgaagctgccataacaaagatggaagcgccgtttgagcagcttc |
30990533 |
T |
|
| Q |
216 |
ttgatcagcttgagttgccggtggatgtgattgttggtgatgttgaactaagatggccagttgatgttggtaatcggagaaatgttccggtggcggcgtt |
315 |
Q |
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| T |
30990534 |
ttgatcagcttgagttgccggtgaatgtgatcgttggtgatgttgagctgcggtggcctgttgatgttggtaatcggaggaatatcccggtggcgtctct |
30990633 |
T |
|
| Q |
316 |
ttggactatgtctgcgtcgttttactctatgttgcatcatcttgatgtgttttcacgaaaacatcacctaactgttgataaactgggtaa |
405 |
Q |
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| T |
30990634 |
ttggaccatgtcggcgtcattttactccatgttgcatcatcttgaggtcttttcacgacaccagcacttaactcatgataagctgggtaa |
30990723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 19 - 405
Target Start/End: Original strand, 30995509 - 30995898
Alignment:
| Q |
19 |
aaaacccaacaaccttctcatcactttcgtactcacagaagagtggctcaccttcatcggcgccgatccaaagccagaatccatccgctttgccaccatt |
118 |
Q |
| |
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||||||||||||| |||| |||||||| ||| |||| ||||| ||||| ||| |||||| ||||||||||| |||||||||||||| |||||||| |
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| T |
30995509 |
aaaacccaacaacattcttatcacttttgtagtcactgaagaatggcttggctttatcggcaatgatccaaagccggaatccatccgcttcgccaccata |
30995608 |
T |
|
| Q |
119 |
cccaacgttatcctgccggagcgggagaaagccggcgat---tttcctgctttctatgaagctgtcatgacaaagatggaagcaccgtttgagaagcttc |
215 |
Q |
| |
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| T |
30995609 |
cccaacgtggctccaccggagcaggagaaaactatagataattttcatctgttttatgaagctgccatgacgaagatggaagcgccgtttgaacagcttc |
30995708 |
T |
|
| Q |
216 |
ttgatcagcttgagttgccggtggatgtgattgttggtgatgttgaactaagatggccagttgatgttggtaatcggagaaatgttccggtggcggcgtt |
315 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||||||||||||||||| | ||||| ||||| |||||||||||||| ||| |||||||||| | | |
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| T |
30995709 |
ttgatcaacttgagttgccggtgaatgtgattgttggtgatgttgaactgcggtggcctgttgacgttggtaatcggaggaatattccggtggcatctct |
30995808 |
T |
|
| Q |
316 |
ttggactatgtctgcgtcgttttactctatgttgcatcatcttgatgtgttttcacgaaaacatcacctaactgttgataaactgggtaa |
405 |
Q |
| |
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|||||||||||| || || |||||||| ||||||||||||||||| || |||||||| | || ||| ||||| |||||| |||||||| |
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| T |
30995809 |
ttggactatgtccgcatcattttactccatgttgcatcatcttgaggtcttttcacgtcatcaacacttaactcatgataagctgggtaa |
30995898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 170 - 373
Target Start/End: Original strand, 31001731 - 31001934
Alignment:
| Q |
170 |
tatgaagctgtcatgacaaagatggaagcaccgtttgagaagcttcttgatcagcttgagttgccggtggatgtgattgttggtgatgttgaactaagat |
269 |
Q |
| |
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| T |
31001731 |
tatgaagctgccatgacgaagatggaagcgccttttgagaggcttcttgatcagcttgagttgccggtgaatgtgatcattggtgacattgagctgcggt |
31001830 |
T |
|
| Q |
270 |
ggccagttgatgttggtaatcggagaaatgttccggtggcggcgttttggactatgtctgcgtcgttttactctatgttgcatcatcttgatgtgttttc |
369 |
Q |
| |
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|||| ||||||||||||| |||||| ||| ||||||||||| | ||||||| ||||| ||||| |||||||| ||||||||||||||||| || ||||| |
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| T |
31001831 |
ggcctgttgatgttggtagtcggaggaatattccggtggcgcctctttggaccatgtcagcgtcattttactccatgttgcatcatcttgaggtcttttc |
31001930 |
T |
|
| Q |
370 |
acga |
373 |
Q |
| |
|
|||| |
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| T |
31001931 |
acga |
31001934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 31001577 - 31001684
Alignment:
| Q |
19 |
aaaacccaacaaccttctcatcactttcgtactcacagaagagtggctcaccttcatcggcgccgatccaaagccagaatccatccgctttgccaccatt |
118 |
Q |
| |
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||||||||||||| |||| ||||| || ||| |||| ||||| |||||||| || || ||||||||| || |||||| ||||||| || | |||||| |
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| T |
31001577 |
aaaacccaacaacattcttatcacctttgtagtcactgaagaatggctcacttttattaacgccgatccgaaaccagaagccatccgtttcacaaccatt |
31001676 |
T |
|
| Q |
119 |
cccaacgt |
126 |
Q |
| |
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|||||||| |
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| T |
31001677 |
cccaacgt |
31001684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 32077073 - 32077027
Alignment:
| Q |
173 |
gaagctgtcatgacaaagatggaagcaccgtttgagaagcttcttga |
219 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||| |||| ||||| |
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| T |
32077073 |
gaagatgtcatgacaaagatggaagcaccctttgaggagctacttga |
32077027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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