View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110-Insertion-19 (Length: 408)
Name: NF5110-Insertion-19
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110-Insertion-19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 8 - 408
Target Start/End: Complemental strand, 34745262 - 34744851
Alignment:
| Q |
8 |
cgtttctatccaaatgctataccaatgtttcgacaccgccttttcaatagcaaacatatatagcagcacacaattcagcagtgacacagaagaggcactc |
107 |
Q |
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| T |
34745262 |
cgtttctatccaaatgctataccaatgtttcgacaccgccttttcaatagcaaacatatatagcagcacacaattcagcagtgacacagaagaggcattc |
34745163 |
T |
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| Q |
108 |
ccaatatttccaattgcagaaccatcaacattaatttttatatatagtcacctccctggggggaatccaacgaacttcagaggtggtaatcggcctaggg |
207 |
Q |
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| T |
34745162 |
ccaatatttccaattgcagaaccatcaacattaatttttatatatagtcacctccctggggggaatccaacgaacttcagacgtgataatcggcctaggg |
34745063 |
T |
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| Q |
208 |
actct---------------cagatgtgaaacctgatagtcagtgacggaggaatgactagcactagtggagaaagaatagctacatttcacttcaacaa |
292 |
Q |
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| T |
34745062 |
actctcataggtaaaaggaacagatgtgaaacctgatagtcagtgacggaggaatgactagcactagtggagaaagaatagctacatttcacttcagcaa |
34744963 |
T |
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| Q |
293 |
taggaagaattttgtcttgaaaacaccgattgttcctctcaatccaaatacaccaaacaatatgaatgactgcagatagcataatctcccgagtcatagg |
392 |
Q |
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| T |
34744962 |
t----agcatgttgtcttgaaaacaccgattgttcctctcaatccaaatacaccaaacaatatgaatgactgcagatagcataatctcccgagtcatatg |
34744867 |
T |
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| Q |
393 |
actccacctaccggta |
408 |
Q |
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| T |
34744866 |
actccacctaccggta |
34744851 |
T |
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